Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G10400 Aethionema arabicum HOM05D003876 ORTHO05D004560 0.0e+00 4993.7 2552 100.0
AL7G25820 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 3693.7 2555 76.0
AT4G27010 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 3591.6 2593 73.6
Sp7g24970 Schrenkiella parvula HOM05D003876 ORTHO05D004560 0.0e+00 3474.1 2629 70.9
Thhalv10024185m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 3293.1 2403 72.8
C01p23130 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 3221.4 2589 68.0
BolC1t02247H Brassica oleracea HOM05D003876 ORTHO05D004560 0.0e+00 3209.5 2624 67.1
A01p18170 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 3203.3 2593 67.5
BraA01t01772Z Brassica rapa HOM05D003876 ORTHO05D004560 0.0e+00 3183.7 2628 66.7
AL1G51930 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 3135.9 2543 67.4
THA.LOC104817664 Tarenaya hassleriana HOM05D003876 ORTHO05D004560 0.0e+00 3048.8 2569 63.4
AL1G52050 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 3024.6 2539 65.6
AT1G72270 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 2929.8 2539 64.4
Carub.0007s1383 Capsella rubella HOM05D003876 ORTHO05D004560 0.0e+00 2929.4 2191 71.5
Thhalv10009735m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 2927.5 2582 65.0
Carub.0004s0902 Capsella rubella HOM05D003876 ORTHO05D004560 0.0e+00 2594.3 2190 65.8
BcaNung03576 Brassica carinata HOM05D003876 ORTHO05D004560 0.0e+00 2280.8 2465 55.0
Atru.chr2.3354 Acer truncatum HOM05D003876 ORTHO05D004560 0.0e+00 2276.5 2613 50.2
QL11p042372 Quercus lobata HOM05D003876 ORTHO05D004560 0.0e+00 2169.8 2616 47.7
Duzib213G0609 Durio zibethinus HOM05D003876 ORTHO05D004560 0.0e+00 2161.0 2606 47.5
Potri.001G423600 Populus trichocarpa HOM05D003876 ORTHO05D004560 0.0e+00 2108.6 2633 47.0
Gorai.009G353000 Gossypium raimondii HOM05D003876 ORTHO05D004560 0.0e+00 2085.5 2623 46.3
Prupe.4G211600 Prunus persica HOM05D003876 ORTHO05D004560 0.0e+00 2084.7 2609 46.6
Dinv31299 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 2074.7 2628 45.8
MD03G1202300 Malus domestica HOM05D003876 ORTHO05D004560 0.0e+00 2069.7 2612 45.7
Dinv12032 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 2067.7 2623 46.0
Manes.15G088800 Manihot esculenta HOM05D003876 ORTHO05D004560 0.0e+00 2058.5 2613 45.9
Gohir.D05G329600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 2031.1 2594 45.9
TWI38G0366 Tripterygium wilfordii HOM05D003876 ORTHO05D004560 0.0e+00 2031.1 2624 45.7
CiPaw.11G188300 Carya illinoinensis HOM05D003876 ORTHO05D004560 0.0e+00 2004.2 2623 44.8
CANSAT21G0957 Cannabis sativa HOM05D003876 ORTHO05D004560 0.0e+00 1982.6 2634 44.9
Haze_09664 Corylus avellana HOM05D003876 ORTHO05D004560 0.0e+00 1960.3 2678 44.5
Thecc.07G169600 Theobroma cacao HOM05D003876 ORTHO05D004560 0.0e+00 1952.6 2254 49.1
RcHm_v2.0_Chr5g0039261 Rosa chinensis HOM05D003876 ORTHO05D004560 0.0e+00 1952.2 2608 44.4
TAR626G1614 Trochodendron aralioides HOM05D003876 ORTHO05D004560 0.0e+00 1941.0 2641 43.9
GSVIVG01037632001 Vitis vinifera HOM05D003876 ORTHO05D004560 0.0e+00 1926.8 2693 43.5
PGR031G0089 Punica granatum HOM05D003876 ORTHO05D004560 0.0e+00 1923.7 2603 43.8
Cpa.g.sc25.33 Carica papaya HOM05D003876 ORTHO05D004560 0.0e+00 1907.9 2528 45.1
Hma1.2p1_1927F.1_g307790 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 1874.8 2616 43.7
FvH4_3g22520 Fragaria vesca HOM05D003876 ORTHO05D004560 0.0e+00 1869.0 2602 42.7
Hma1.2p1_1458F.1_g284750 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 1844.3 2690 42.7
Rhsim03G0118500 Rhododendron simsii HOM05D003876 ORTHO05D004560 0.0e+00 1830.5 2747 42.4
Eucgr.F03461 Eucalyptus grandis HOM05D003876 ORTHO05D004560 0.0e+00 1830.1 2617 42.4
Lalb_Chr15g0081151 Lupinus albus HOM05D003876 ORTHO05D004560 0.0e+00 1815.0 2591 41.6
Sc07g0002730 Simmondsia chinensis HOM05D003876 ORTHO05D004560 0.0e+00 1776.1 2600 42.0
Cc02_g11170 Coffea canephora HOM05D003876 ORTHO05D004560 0.0e+00 1760.7 2596 41.4
vmacro22462 Vaccinium macrocarpon HOM05D003876 ORTHO05D004560 0.0e+00 1760.7 2626 42.7
Glyma.08G316100 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 1749.6 2613 41.5
arahy.Tifrunner.gnm1.ann1.CB0JBU Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 1748.0 2639 40.3
Ca_01714_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 0.0e+00 1733.4 2613 40.6
FAN21G1021 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1718.0 2574 40.9
CAN.G93.17 Capsicum annuum HOM05D003876 ORTHO05D004560 0.0e+00 1715.3 2604 40.7
arahy.Tifrunner.gnm1.ann1.S1L982 Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 1706.8 2612 40.0
MSTRG.9162 Avicennia marina HOM05D003876 ORTHO05D004560 0.0e+00 1704.5 2625 40.8
Lj6g0024588 Lotus japonicus HOM05D003876 ORTHO05D004560 0.0e+00 1692.9 2577 40.3
TPR.G34799 Trifolium pratense HOM05D003876 ORTHO05D004560 0.0e+00 1688.7 2599 40.0
ClCG09G008390 Citrullus lanatus HOM05D003876 ORTHO05D004560 0.0e+00 1687.9 2602 41.5
Medtr3g051730 Medicago truncatula HOM05D003876 ORTHO05D004560 0.0e+00 1681.0 2607 39.6
Nn1g07120 Nelumbo nucifera HOM05D003876 ORTHO05D004560 0.0e+00 1680.6 2386 42.5
Sed0026666 Sechium edule HOM05D003876 ORTHO05D004560 0.0e+00 1680.6 2606 40.8
Peaxi162Scf01227g00036 Petunia axillaris HOM05D003876 ORTHO05D004560 0.0e+00 1672.1 2597 40.3
Psat7g030440 Pisum sativum HOM05D003876 ORTHO05D004560 0.0e+00 1671.4 2605 40.1
Sopen02g015700 Solanum pennellii HOM05D003876 ORTHO05D004560 0.0e+00 1663.7 2623 39.8
EL10Ac4g07826 Beta vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 1659.4 2602 39.8
MELO3C021122.2 Cucumis melo HOM05D003876 ORTHO05D004560 0.0e+00 1655.6 2599 40.6
Aqoxy1G03250 Aquilegia oxysepala HOM05D003876 ORTHO05D004560 0.0e+00 1652.9 2664 39.7
HanXRQChr14g0456751 Helianthus annuus HOM05D003876 ORTHO05D004560 0.0e+00 1637.5 2591 40.5
AUR62020460 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1635.2 2660 39.4
CsaV3_7G026680 Cucumis sativus L. HOM05D003876 ORTHO05D004560 0.0e+00 1632.1 2595 40.5
SalBow4G0850 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1624.8 2613 39.6
Hund02060 Selenicereus undatus HOM05D003876 ORTHO05D004560 0.0e+00 1607.4 2637 39.7
SGA_v2.0_scaffold13G06370 Striga asiatica HOM05D003876 ORTHO05D004560 0.0e+00 1605.1 2611 38.8
SalBow4G0132 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1599.7 2666 38.9
ECA238G2706 Erigeron canadensis HOM05D003876 ORTHO05D004560 0.0e+00 1591.2 2550 39.5
AUR62015755 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1588.2 2616 39.2
PSO675G8409 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1584.7 2660 38.1
PSO541G2928 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1577.4 2656 38.1
CARHR234630 Cardamine hirsuta HOM05D003876 ORTHO05D004560 0.0e+00 1574.7 1222 68.7
Lsat_1_v5_gn_2_112761 Lactuca sativa HOM05D003876 ORTHO05D004560 0.0e+00 1560.4 2546 39.3
FAN16G2970 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1552.3 2579 38.8
Ciclev10007236m.g Citrus clementina HOM05D003876 ORTHO05D004560 0.0e+00 1544.6 1798 48.8
Oeu042740.2 Olea europaea HOM05D003876 ORTHO05D004560 0.0e+00 1540.8 2791 37.5
FAN11G2639 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1521.5 2540 38.9
MBI16_g24182_MAGBIO Magnolia biondii HOM05D003876 ORTHO05D004560 0.0e+00 1521.1 2683 37.1
Glyma.18G096800 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 1437.2 2139 41.9
Ah.14g087580 Amaranthus hybridus HOM05D003876 ORTHO05D004560 0.0e+00 1423.7 2605 36.6
Migut.F01968 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1413.7 2591 36.4
Migut.D01652 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1396.3 2342 38.0
Zm00001eb070180 Zea mays HOM05D003876 ORTHO05D004560 0.0e+00 1297.3 2659 34.6
DCAR_015293 Daucus carota HOM05D003876 ORTHO05D004560 0.0e+00 1285.4 2059 39.8
Nitab4.5_0000071g0230 Nicotiana tabacum HOM05D003876 ORTHO05D004560 0.0e+00 1270.4 2311 37.0
ATR0752G176 Amborella trichopoda HOM05D003876 ORTHO05D004560 0.0e+00 1251.9 2369 35.9
Phvul.006G043300 Phaseolus vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 1243.4 2038 38.8
Gohir.A05G328600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 1189.9 1745 41.7
Solyc02g065500.4 Solanum lycopersicum HOM05D003876 ORTHO05D004560 0.0e+00 1180.2 2054 37.1
SHI26626 Sapria himalayana HOM05D003876 ORTHO05D004560 0.0e+00 1175.2 2118 37.5
CARHR233850 Cardamine hirsuta HOM05D003876 ORTHO05D004560 9.8e-297 1025.0 901 63.6
Lj4A311T24 Lonicera japonica HOM05D003876 ORTHO05D004560 6.8e-282 975.7 1806 36.9
Nitab4.5_0014432g0010 Nicotiana tabacum HOM05D003876 ORTHO05D004560 1.0e-261 908.7 1721 36.1
AL2G26020 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 1.1e-255 888.6 734 66.6
Lj4C311T3 Lonicera japonica HOM05D003876 ORTHO05D004560 7.4e-220 769.6 778 53.5
CSS0014906 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 1.1e-218 765.8 911 49.7
Mapoly0015s0081 Marchantia polymorpha HOM05D003876 ORTHO05D004560 2.9e-200 704.5 2782 26.2
COL.COLO4_07980 Corchorus olitorius HOM05D003876 ORTHO05D004560 9.1e-194 682.9 813 48.6
CARHR234640 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.7e-192 678.7 488 73.6
AL1048U10010 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 1.7e-187 662.1 1077 41.1
Pp3c2_30140 Physcomitrium patens HOM05D003876 ORTHO05D004560 5.2e-181 640.6 2692 25.8
COL.COLO4_07981 Corchorus olitorius HOM05D003876 ORTHO05D004560 7.8e-177 626.7 610 56.4
SMO146G0332 Selaginella moellendorffii HOM05D003876 ORTHO05D004560 1.6e-169 602.4 2533 25.9
CDE12G0710 Ceratophyllum demersum HOM05D003876 ORTHO05D004560 2.3e-168 598.6 2552 25.3
AagrBONN_evm.TU.Sc2ySwM_362.592 Anthoceros agrestis HOM05D003876 ORTHO05D004560 1.1e-165 589.7 2736 25.2
CSS0021387 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 1.7e-160 572.4 583 54.0
HPP92_009566 Vanilla planifolia HOM05D003876 ORTHO05D004560 9.6e-159 566.6 1164 34.5
CARHR229820 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.0e-152 546.6 470 65.3
VMungo0540G1458 Vigna mungo HOM05D003876 ORTHO05D004560 1.1e-143 516.5 602 49.2
SEGI_24019 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 6.9e-133 480.7 924 35.8
BcaNung03573 Brassica carinata HOM05D003876 ORTHO05D004560 1.8e-128 466.1 352 71.9
Ciclev10007711m.g Citrus clementina HOM05D003876 ORTHO05D004560 2.4e-125 455.7 552 48.0
HPP92_009565 Vanilla planifolia HOM05D003876 ORTHO05D004560 5.3e-125 454.5 755 38.7
VMungo0540G0476 Vigna mungo HOM05D003876 ORTHO05D004560 2.0e-111 409.5 521 44.3
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 2.4e-109 402.5 1142 30.8
CARHR229800 Cardamine hirsuta HOM05D003876 ORTHO05D004560 7.2e-106 391.0 329 63.8
Lj4C310T3 Lonicera japonica HOM05D003876 ORTHO05D004560 3.0e-104 385.6 1137 29.2
Lj4A310T24 Lonicera japonica HOM05D003876 ORTHO05D004560 2.6e-103 382.5 652 38.8
CSS0042398 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 6.1e-97 361.3 419 50.6
SEGI_05754 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 2.0e-95 356.3 706 35.3
CARHR229810 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.3e-94 353.6 356 56.5
Haze_08116 Corylus avellana HOM05D003876 ORTHO05D004560 1.6e-92 346.7 315 60.3
Ciclev10007833m.g Citrus clementina HOM05D003876 ORTHO05D004560 1.9e-74 286.6 472 37.9
CBR_g48672 Chara braunii HOM05D003876 ORTHO05D004560 2.5e-50 206.5 516 30.8
Ca_01853_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 8.1e-49 201.4 184 59.8
Gohir.A05G328616 Gossypium hirsutum HOM05D003876 ORTHO05D004560 1.4e-48 200.7 192 54.2
Glyma.02G172300 Glycine max HOM05D003876 ORTHO05D004560 4.0e-48 199.1 183 55.7
Psat3g160280 Pisum sativum HOM05D003876 ORTHO05D004560 5.8e-47 195.3 336 35.4
Os04g0625300 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 2.9e-38 166.4 356 33.7
Lj4A310G25 Lonicera japonica HOM05D003876 ORTHO05D004560 5.4e-37 162.2 213 43.2
Gohir.A05G328608 Gossypium hirsutum HOM05D003876 ORTHO05D004560 7.1e-37 161.8 151 54.3
SEGI_37008 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.1e-34 154.5 277 34.7
SHI26628 Sapria himalayana HOM05D003876 ORTHO05D004560 4.5e-31 142.5 351 33.0
Os04g0625350 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 8.4e-30 138.3 156 46.2
Zm00001eb004360 Zea mays HOM05D003876 ORTHO05D000530 1.0e-27 131.3 146 43.8
Nn004s41399 Nelumbo nucifera HOM05D003876 ORTHO05D004560 1.8e-27 130.6 251 37.1
SHI26627 Sapria himalayana HOM05D003876 ORTHO05D004560 2.6e-23 116.7 121 45.5
ATR0752G210 Amborella trichopoda HOM05D003876 ORTHO05D004560 4.5e-23 115.9 209 37.8
MCO01G437 Micromonas commoda HOM05D003876 ORTHO05D004560 7.1e-21 108.6 375 25.3
BraA10t45354Z Brassica rapa HOM05D003876 ORTHO05D043045 7.9e-20 105.1 118 58.5
RcHm_v2.0_Chr5g0039221 Rosa chinensis HOM05D003876 ORTHO05D004560 1.3e-17 97.8 206 34.0
Thecc.07G167900 Theobroma cacao HOM05D003876 ORTHO05D004560 4.8e-17 95.9 119 43.7
Psat7g202680 Pisum sativum HOM05D003876 ORTHO05D004560 2.4e-16 93.6 79 57.0
HPP92_009518 Vanilla planifolia HOM05D003876 ORTHO05D004560 4.0e-16 92.8 135 37.0
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 7.6e-15 88.6 433 23.8
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 7.6e-15 88.6 433 23.8
Nitab4.5_0014432g0020 Nicotiana tabacum HOM05D003876 ORTHO05D004560 3.8e-14 86.3 65 69.2
Psat7g035480 Pisum sativum HOM05D003876 ORTHO05D004560 8.4e-14 85.1 96 46.9
QL08p011039 Quercus lobata HOM05D003876 ORTHO05D004560 3.2e-13 83.2 131 38.9
FAN25G0312 Fragaria x ananassa HOM05D003876 ORTHO05D004560 7.1e-13 82.0 120 42.5
PSO478G0467 Papaver somniferum HOM05D003876 ORTHO05D004560 2.5e-10 73.6 113 34.5
RcHm_v2.0_Chr5g0039171 Rosa chinensis HOM05D003876 ORTHO05D004560 2.5e-10 73.6 147 36.7
Psat1g105760 Pisum sativum HOM05D003876 ORTHO05D004560 7.4e-10 72.0 91 40.7
MELO3C029177.2 Cucumis melo HOM05D003876 ORTHO05D004560 1.6e-09 70.9 102 38.2
C03p92150 Brassica napus HOM05D001133 ORTHO05D000941 2.1e-09 70.5 54 61.1
Cre02.g074300 Chlamydomonas reinhardtii HOM05D003876 ORTHO05D004560 2.8e-09 70.1 204 27.5
QL08p010686 Quercus lobata HOM05D003876 ORTHO05D004560 8.2e-09 68.6 53 60.4
QL08p010640 Quercus lobata HOM05D003876 ORTHO05D004560 4.1e-08 66.2 74 51.4
QL10p036392 Quercus lobata HOM05D003876 ORTHO05D004560 3.4e-07 63.2 74 50.0
SEGI_19037 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 5.9e-07 62.4 161 32.9


User provided reference genes

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