Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 0.0e+00 1195.6 684 100.0
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 2.8e-267 925.2 684 80.4
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.1e-266 923.3 686 79.2
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 2.0e-265 919.1 682 80.5
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 3.8e-264 914.8 686 79.0
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 1.4e-261 906.4 685 79.9
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 5.4e-258 894.4 686 75.8
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 1.6e-257 892.9 680 77.8
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 2.7e-257 892.1 683 77.7
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 5.9e-257 891.0 683 78.2
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 6.1e-254 880.9 684 77.8
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 1.0e-253 880.2 686 76.1
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 1.4e-253 879.8 683 77.5
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 2.3e-253 879.0 684 78.2
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 7.5e-252 874.0 684 75.7
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 8.3e-251 870.5 684 75.6
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 6.0e-225 784.6 691 67.0
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 2.1e-217 759.6 689 68.9
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 1.4e-213 746.9 690 69.9
BcaC09g50863 Brassica carinata HOM05D003682 ORTHO05D004224 1.3e-208 730.3 560 78.0
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 4.0e-197 692.2 709 60.8
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 5.1e-192 675.2 703 63.0
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.5e-188 663.7 709 57.5
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 9.7e-183 644.4 703 61.7
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 4.5e-180 635.6 703 61.0
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 1.0e-179 634.4 703 61.2
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.7e-179 633.6 702 61.0
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 1.1e-178 630.9 701 57.9
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.1e-178 630.9 702 60.7
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 1.2e-177 627.5 702 60.5
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 1.1e-175 620.9 702 52.6
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 6.9e-173 611.7 711 58.9
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 7.7e-172 608.2 703 59.5
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 1.8e-168 597.0 702 57.3
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 2.3e-168 596.7 701 57.2
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 9.7e-167 591.3 704 58.1
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 1.6e-164 583.9 705 50.5
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 2.6e-164 583.2 702 55.4
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 4.5e-164 582.4 703 56.9
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 5.5e-162 575.5 703 56.8
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 2.0e-159 567.0 697 54.4
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 3.3e-159 566.2 699 56.4
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 1.3e-158 564.3 708 56.5
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 1.8e-157 560.5 703 54.3
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 2.4e-157 560.1 714 53.6
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 2.9e-155 553.1 705 54.5
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 6.5e-155 552.0 710 54.1
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 3.2e-154 549.7 706 55.7
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 4.2e-154 549.3 708 54.5
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 7.2e-154 548.5 709 50.6
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 3.6e-153 546.2 712 54.1
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 8.0e-153 545.0 705 54.9
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 8.0e-153 545.0 705 54.6
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 1.4e-152 544.3 705 54.6
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 3.0e-152 543.1 703 52.9
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 5.2e-152 542.3 700 55.0
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 1.5e-151 540.8 699 54.2
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 1.5e-151 540.8 712 50.8
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 2.0e-151 540.4 701 51.8
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 1.3e-150 537.7 708 51.7
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 2.2e-150 537.0 708 53.4
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 2.8e-150 536.6 705 48.5
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 4.8e-150 535.8 728 51.6
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 5.4e-149 532.3 699 54.2
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 9.1e-149 531.6 707 54.5
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 1.2e-148 531.2 699 52.5
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 5.9e-148 528.9 756 47.0
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 7.7e-148 528.5 702 53.8
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 1.3e-147 527.7 710 48.6
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 2.2e-147 526.9 709 52.0
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 4.2e-146 522.7 670 55.2
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 7.2e-146 521.9 731 51.4
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 1.2e-145 521.2 701 51.5
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 1.6e-145 520.8 702 52.8
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 3.6e-145 519.6 714 51.3
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 4.7e-145 519.2 699 53.9
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 6.1e-145 518.8 706 51.1
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 5.7e-143 512.3 768 41.0
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 9.2e-141 505.0 729 51.3
Dinv44868 Davidia involucrata HOM05D003682 ORTHO05D004224 2.7e-140 503.4 633 58.1
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 2.7e-140 503.4 711 53.4
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 1.3e-139 501.1 705 53.0
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 2.9e-139 500.0 708 51.7
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 6.6e-139 498.8 749 48.2
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 1.5e-138 497.7 707 49.4
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 4.3e-138 496.1 696 51.9
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 6.1e-137 492.3 708 50.7
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 8.0e-137 491.9 707 49.8
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 1.0e-136 491.5 708 48.2
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 1.4e-136 491.1 709 53.0
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 3.0e-136 490.0 706 50.6
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 6.8e-136 488.8 697 50.4
Nn5g27243 Nelumbo nucifera HOM05D003682 ORTHO05D004224 8.9e-136 488.4 631 57.1
Sc26g0002240 Simmondsia chinensis HOM05D003682 ORTHO05D004224 1.2e-135 488.0 636 56.4
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 1.5e-135 487.6 705 51.1
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 2.4e-133 480.3 707 50.6
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 5.9e-132 475.7 711 50.8
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 1.6e-129 467.6 698 52.1
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 8.9e-128 461.8 693 52.2
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 8.3e-126 455.3 712 49.4
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 4.7e-121 439.5 702 41.2
Oeu025829.1 Olea europaea HOM05D003682 ORTHO05D004224 6.8e-120 435.6 639 54.9
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 3.2e-117 426.8 705 40.6
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 7.1e-117 425.6 702 42.3
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.6e-116 424.5 702 45.4
Atru.chr13.999 Acer truncatum HOM05D003682 ORTHO05D004224 8.6e-115 418.7 469 64.0
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 3.3e-114 416.8 687 41.5
Os06g0677500 Oryza sativa ssp. japonica HOM05D003682 ORTHO05D004224 6.2e-113 412.5 708 39.7
Zm00001eb273870 Zea mays HOM05D003682 ORTHO05D004224 1.2e-111 408.3 701 39.1
AUR62037113 Chenopodium quinoa HOM05D003682 ORTHO05D004224 6.0e-108 396.0 543 43.1
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 1.5e-103 381.3 690 39.4
MD15G1387100 Malus domestica HOM05D003682 ORTHO05D004224 4.9e-102 376.3 520 53.5
CDE01G0832 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 1.9e-101 374.4 626 50.3
CSS0003141 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 8.1e-97 359.0 525 45.3
CSS0030960 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.9e-94 349.7 517 52.2
SalBow4G2331 Salvia bowleyana HOM05D003682 ORTHO05D004224 5.1e-91 339.7 520 51.5
Mapoly0151s0003 Marchantia polymorpha HOM05D003682 ORTHO05D004224 3.1e-80 303.9 716 42.2
SEGI_15297 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 4.9e-78 296.6 528 36.7
SHI09562 Sapria himalayana HOM05D003682 ORTHO05D000023 1.1e-77 295.4 530 39.8
Prupe.1G572600 Prunus persica HOM05D003682 ORTHO05D004224 5.7e-74 283.1 465 43.0
HanXRQChr08g0233491 Helianthus annuus HOM05D003682 ORTHO05D004224 1.1e-69 268.9 423 51.8
Lalb_Chr04g0252801 Lupinus albus HOM05D003682 ORTHO05D004224 1.3e-65 255.4 273 65.2
GSVIVG01009190001 Vitis vinifera HOM05D003682 ORTHO05D004224 7.7e-63 246.1 254 74.0
Glyma.02G123302 Glycine max HOM05D003682 ORTHO05D004224 1.0e-59 235.7 341 44.3
GSVIVG01009191001 Vitis vinifera HOM05D003682 ORTHO05D004224 1.7e-57 228.4 284 51.4
SEGI_17476 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.8e-57 227.6 428 35.7
CSS0029858 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.1e-56 225.7 476 34.5
CSS0013415 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.5e-53 213.4 466 34.8
BcaNung04806 Brassica carinata HOM05D003682 ORTHO05D004224 2.1e-52 211.5 124 83.9
COL.COLO4_35257 Corchorus olitorius HOM05D003682 ORTHO05D004224 1.7e-49 201.8 122 82.0
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 1.7e-49 201.8 251 51.4
CBR_g19613 Chara braunii HOM05D003682 ORTHO05D004224 4.8e-49 200.3 706 31.2
Cpa.g.c39765 Carica papaya HOM05D003682 ORTHO05D004224 1.8e-48 198.4 189 57.7
unitig_0.g155 Utricularia gibba HOM05D003682 ORTHO05D004224 3.3e-42 177.6 340 41.2
BcaNung05639 Brassica carinata HOM05D006679 ORTHO05D008461 9.7e-42 176.0 131 66.4
AagrBONN_evm.TU.Sc2ySwM_117.1254 Anthoceros agrestis HOM05D003682 ORTHO05D004224 4.1e-40 170.6 555 27.7
Cpa.g.c34457.1 Carica papaya HOM05D003682 ORTHO05D004224 2.2e-38 164.9 134 66.4
BcaB06g27567 Brassica carinata HOM05D003682 ORTHO05D004224 7.5e-34 149.8 118 70.3
SHI09561 Sapria himalayana HOM05D000105 ORTHO05D000023 1.1e-32 146.0 121 62.8
Pp3c1_10430 Physcomitrium patens HOM05D003682 ORTHO05D004224 4.1e-32 144.1 508 29.7
SEGI_24080 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.9e-30 137.9 122 55.7
SalBow4G1793 Salvia bowleyana HOM05D003682 ORTHO05D004224 6.5e-30 136.7 187 48.7
HPP92_013470 Vanilla planifolia HOM05D003682 ORTHO05D004224 4.9e-25 120.6 202 46.5
SMO307G0051 Selaginella moellendorffii HOM05D003682 ORTHO05D004224 3.1e-24 117.9 122 48.4
unitig_0.g156 Utricularia gibba HOM05D003682 ORTHO05D004224 4.1e-24 117.5 109 55.0
Actinidia36899 Actinidia chinensis HOM05D003682 ORTHO05D004224 5.0e-22 110.5 147 49.0
CSS0023594 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.6e-21 107.1 98 60.2
HanXRQChr08g0233481 Helianthus annuus HOM05D003682 ORTHO05D004224 1.6e-20 105.5 140 53.6
Dinv42603 Davidia involucrata HOM05D003682 ORTHO05D004224 1.8e-19 102.1 110 50.9
CSS0005132 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.3e-19 101.7 94 60.6
EL10Ac3g05976 Beta vulgaris HOM05D003682 ORTHO05D004224 8.9e-19 99.8 70 68.6
Psat5g049320 Pisum sativum HOM05D003682 ORTHO05D004224 2.9e-17 94.7 151 39.1
MCO12G062 Micromonas commoda HOM05D003682 ORTHO05D004224 5.4e-16 90.5 286 29.7
PGR102G2117 Punica granatum HOM05D003682 ORTHO05D004224 9.2e-16 89.7 251 29.5
CSS0026243 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.5e-15 87.8 106 41.5
CSS0040590 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.5e-15 87.8 106 41.5
Aqoxy2G00859 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 1.3e-14 85.9 109 40.4
CSS0014234 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.9e-14 84.3 106 41.5
CSS0003380 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.0e-14 84.0 103 39.8
CSS0042448 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 7.3e-13 80.1 106 38.7
Lalb_Chr04g0252781 Lupinus albus HOM05D003682 ORTHO05D004224 6.2e-12 77.0 75 52.0
Cre07.g339350 Chlamydomonas reinhardtii HOM05D003682 ORTHO05D004224 2.3e-11 75.1 274 42.7
CSS0006921 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.1e-11 74.7 106 37.7
CSS0000677 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.0e-11 74.3 106 38.7
CSS0029231 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.5e-10 72.4 106 38.7
TAR628G0387 Trochodendron aralioides HOM05D003682 ORTHO05D004224 2.6e-10 71.6 51 58.8
arahy.Tifrunner.gnm1.ann1.R6K80C Arachis hypogaea HOM05D003682 ORTHO05D004224 1.3e-09 69.3 143 40.6
PRCOL_00003254 Prasinoderma coloniale HOM05D003682 ORTHO05D004224 2.9e-09 68.2 258 24.0
CSS0029499 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.1e-08 66.2 61 60.7
CSS0020196 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.9e-08 65.5 61 60.7
CSS0037747 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.9e-08 65.5 61 60.7
Lsat_1_v5_gn_3_58200 Lactuca sativa HOM05D003682 ORTHO05D004224 1.9e-08 65.5 72 47.2
arahy.Tifrunner.gnm1.ann1.H7L4UV Arachis hypogaea HOM05D003682 ORTHO05D004224 4.1e-08 64.3 102 41.2
CSS0029631 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.1e-08 64.3 61 59.0
CSS0037736 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.1e-08 64.3 61 59.0
CSS0045772 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 7.0e-08 63.5 62 56.5
Ah.04g150940 Amaranthus hybridus HOM05D007488 ORTHO05D009461 4.6e-07 60.8 29 89.7
Nn1g05594 Nelumbo nucifera HOM05D003682 ORTHO05D004224 4.6e-07 60.8 60 56.7
Prupe.1G572700 Prunus persica HOM05D003682 ORTHO05D004224 1.7e-06 58.9 44 52.3
HanXRQChr11g0332681 Helianthus annuus HOM05D003682 ORTHO05D004224 2.3e-06 58.5 60 48.3


User provided reference genes

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