Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G6720 Aethionema arabicum HOM05D005978 ORTHO05D007472 0.0e+00 2133.6 1172 100.0
AL2G36770 Arabidopsis lyrata HOM05D005978 ORTHO05D007472 0.0e+00 1849.7 1169 79.8
AT1G76630 Arabidopsis thaliana HOM05D005978 ORTHO05D007472 0.0e+00 1837.8 1169 79.2
CARHR070190 Cardamine hirsuta HOM05D005978 ORTHO05D007472 0.0e+00 1809.3 1168 78.3
BraA07t31758Z Brassica rapa HOM05D005978 ORTHO05D007472 0.0e+00 1787.7 1171 77.8
A07p42300 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 1782.3 1171 77.6
C06p50880 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 1758.8 1170 76.8
Thhalv10018029m.g Eutrema salsugineum HOM05D005978 ORTHO05D007472 0.0e+00 1756.5 1169 76.5
BcaC08g47175 Brassica carinata HOM05D005978 ORTHO05D007472 0.0e+00 1753.4 1170 76.1
BolC6t40113H Brassica oleracea HOM05D005978 ORTHO05D007472 0.0e+00 1753.0 1170 76.6
BcaC08g47227 Brassica carinata HOM05D005978 ORTHO05D007472 0.0e+00 1743.8 1169 76.3
Sp5g31790 Schrenkiella parvula HOM05D005978 ORTHO05D007472 0.0e+00 1743.4 1169 76.0
Carub.0002s2353 Capsella rubella HOM05D005978 ORTHO05D007472 0.0e+00 1724.1 1170 75.3
THA.LOC104812025 Tarenaya hassleriana HOM05D005978 ORTHO05D007472 0.0e+00 1549.6 1167 68.3
Cpa.g.sc36.98 Carica papaya HOM05D005978 ORTHO05D007472 0.0e+00 1323.5 1186 60.8
Thecc.08G097500 Theobroma cacao HOM05D005978 ORTHO05D007472 0.0e+00 1317.0 1165 57.0
Atru.chr13.20 Acer truncatum HOM05D005978 ORTHO05D007472 0.0e+00 1315.8 1169 58.1
Manes.18G000350 Manihot esculenta HOM05D005978 ORTHO05D007472 0.0e+00 1307.4 1171 55.6
TWI36G1144 Tripterygium wilfordii HOM05D005978 ORTHO05D007472 0.0e+00 1305.0 1168 56.8
Ciclev10003766m.g Citrus clementina HOM05D005978 ORTHO05D007472 0.0e+00 1293.1 1166 56.8
CiPaw.08G079000 Carya illinoinensis HOM05D005978 ORTHO05D007472 0.0e+00 1288.5 1172 56.4
QL02p016300 Quercus lobata HOM05D005978 ORTHO05D007472 0.0e+00 1285.4 1388 50.1
Potri.002G001700 Populus trichocarpa HOM05D005978 ORTHO05D007472 0.0e+00 1273.5 1167 55.1
Gorai.009G185700 Gossypium raimondii HOM05D005978 ORTHO05D007472 0.0e+00 1272.3 1176 55.5
Prupe.5G001100 Prunus persica HOM05D005978 ORTHO05D007472 0.0e+00 1268.8 1171 57.1
Dinv30321 Davidia involucrata HOM05D005978 ORTHO05D007472 0.0e+00 1263.1 1173 56.2
MD06G1000600 Malus domestica HOM05D005978 ORTHO05D007472 0.0e+00 1261.1 1171 55.8
TAR376G0648 Trochodendron aralioides HOM05D005978 ORTHO05D007472 0.0e+00 1245.7 1169 54.7
Sabra02G0001200 Salix brachista HOM05D005978 ORTHO05D007472 0.0e+00 1243.8 1207 53.3
Haze_22888 Corylus avellana HOM05D005978 ORTHO05D007472 0.0e+00 1225.7 1122 57.1
CANSAT64G0954 Cannabis sativa HOM05D005978 ORTHO05D007472 0.0e+00 1222.6 1188 54.0
GSVIVG01013460001 Vitis vinifera HOM05D005978 ORTHO05D007472 0.0e+00 1221.5 1170 53.8
Glyma.01G245200 Glycine max HOM05D005978 ORTHO05D007472 0.0e+00 1214.1 1168 52.7
RcHm_v2.0_Chr7g0217581 Rosa chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1211.1 1171 54.4
FAN18G0791 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1208.7 1171 53.9
FvH4_5g26690 Fragaria vesca HOM05D005978 ORTHO05D007472 0.0e+00 1208.4 1171 53.9
Duzib041G0071 Durio zibethinus HOM05D005978 ORTHO05D007472 0.0e+00 1206.4 1170 53.0
COL.COLO4_12265 Corchorus olitorius HOM05D005978 ORTHO05D007472 0.0e+00 1206.0 1170 53.7
Actinidia15540 Actinidia chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1203.7 1169 53.4
Medtr5g004660 Medicago truncatula HOM05D005978 ORTHO05D007472 0.0e+00 1198.0 1167 52.4
Lalb_Chr16g0376221 Lupinus albus HOM05D005978 ORTHO05D007472 0.0e+00 1194.5 1160 52.7
Nn6g31553 Nelumbo nucifera HOM05D005978 ORTHO05D007472 0.0e+00 1194.5 1176 53.2
Eucgr.F03624 Eucalyptus grandis HOM05D005978 ORTHO05D007472 0.0e+00 1191.0 1174 53.0
Phvul.002G054600 Phaseolus vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1184.5 1166 52.0
Lj1g0010496 Lotus japonicus HOM05D005978 ORTHO05D007472 0.0e+00 1184.1 1174 52.5
FAN13G0154 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1183.3 1171 52.9
ClCG11G019200 Citrullus lanatus HOM05D005978 ORTHO05D007472 0.0e+00 1181.8 1202 52.7
PGR031G1913 Punica granatum HOM05D005978 ORTHO05D007472 0.0e+00 1179.1 1172 52.8
TPR.G21607 Trifolium pratense HOM05D005978 ORTHO05D007472 0.0e+00 1174.8 1168 52.5
arahy.Tifrunner.gnm1.ann1.BP04P6 Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 1167.5 1171 50.6
MELO3C017073.2 Cucumis melo HOM05D005978 ORTHO05D007472 0.0e+00 1167.5 1165 55.5
CsaV3_4G037800 Cucumis sativus L. HOM05D005978 ORTHO05D007472 0.0e+00 1159.1 1165 55.3
FAN04G0649 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1150.6 1171 52.3
Migut.M00377 Erythranthe guttata HOM05D005978 ORTHO05D007472 0.0e+00 1142.1 1171 51.7
arahy.Tifrunner.gnm1.ann1.U7IYJM Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 1137.9 1171 49.5
Sed0020914 Sechium edule HOM05D005978 ORTHO05D007472 0.0e+00 1134.8 1165 51.8
SalBow7G3859 Salvia bowleyana HOM05D005978 ORTHO05D007472 0.0e+00 1124.0 1168 50.1
Rhsim06G0000600 Rhododendron simsii HOM05D005978 ORTHO05D007472 0.0e+00 1113.6 1381 45.3
Cc10_g00090 Coffea canephora HOM05D005978 ORTHO05D007472 0.0e+00 1100.1 1162 50.7
Gohir.A05G177300 Gossypium hirsutum HOM05D005978 ORTHO05D007472 0.0e+00 1099.7 1037 54.7
ECA232G2674 Erigeron canadensis HOM05D005978 ORTHO05D007472 0.0e+00 1099.0 1168 50.8
AUR62042533 Chenopodium quinoa HOM05D005978 ORTHO05D007472 0.0e+00 1094.0 1177 50.3
PSO675G6081 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 1094.0 1170 49.7
PSO541G4404 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 1092.0 1170 49.6
HanXRQChr16g0512201 Helianthus annuus HOM05D005978 ORTHO05D007472 0.0e+00 1087.4 1172 49.3
Sopen04g036610 Solanum pennellii HOM05D005978 ORTHO05D007472 8.0e-312 1074.7 1175 48.5
Hund05194 Selenicereus undatus HOM05D005978 ORTHO05D007472 1.6e-311 1072.8 1169 49.0
MSTRG.14837 Avicennia marina HOM05D005978 ORTHO05D007472 5.6e-311 1071.2 1168 49.1
Lsat_1_v5_gn_9_48081 Lactuca sativa HOM05D005978 ORTHO05D007472 3.9e-309 1065.1 1168 49.5
Psat4g213520 Pisum sativum HOM05D005978 ORTHO05D007472 1.1e-308 1063.5 1054 52.9
CAN.G1330.32 Capsicum annuum HOM05D005978 ORTHO05D007472 2.2e-307 1059.3 1180 47.5
MBI04_g23900_MAGBIO Magnolia biondii HOM05D005978 ORTHO05D007472 1.1e-306 1057.0 1206 47.5
Aqoxy1G03258 Aquilegia oxysepala HOM05D005978 ORTHO05D007472 9.1e-306 1053.9 1161 48.3
EL10Ac1g01856 Beta vulgaris HOM05D005978 ORTHO05D007472 1.5e-292 1010.0 1166 47.7
Ca_24335_v3 Cicer arietinum L. HOM05D005978 ORTHO05D007472 2.6e-292 1009.2 1047 51.1
SGA_v2.0_scaffold34G13893 Striga asiatica HOM05D005978 ORTHO05D007472 8.2e-291 1004.2 1135 48.8
HPP92_007456 Vanilla planifolia HOM05D005978 ORTHO05D007472 7.0e-290 1001.1 1175 46.1
FAN08G2840 Fragaria x ananassa HOM05D005978 ORTHO05D007472 3.6e-278 962.2 1103 48.5
Sc26g0004780 Simmondsia chinensis HOM05D005978 ORTHO05D007472 5.4e-274 948.3 1168 44.8
Peaxi162Scf00385g01220 Petunia axillaris HOM05D005978 ORTHO05D007472 5.5e-271 938.3 1212 44.1
Os10g0548200 Oryza sativa ssp. japonica HOM05D005978 ORTHO05D007472 8.9e-269 931.0 1184 42.7
Zm00001eb022830 Zea mays HOM05D005978 ORTHO05D007472 6.6e-264 914.8 1180 43.0
ATR0605G322 Amborella trichopoda HOM05D005978 ORTHO05D007472 1.2e-254 884.0 1111 44.1
AUR62035192 Chenopodium quinoa HOM05D005978 ORTHO05D007472 1.8e-253 880.2 1160 44.4
Solyc04g082980.2 Solanum lycopersicum HOM05D005978 ORTHO05D007472 2.6e-252 876.3 1115 44.3
SEGI_31935 Sequoiadendron giganteum HOM05D005978 ORTHO05D007472 2.0e-244 850.1 1177 41.3
Gohir.D05G180700 Gossypium hirsutum HOM05D005978 ORTHO05D007472 2.1e-241 840.1 715 59.3
DCAR_022963 Daucus carota HOM05D005978 ORTHO05D007472 3.5e-217 759.6 835 49.0
unitig_899.g15248 Utricularia gibba HOM05D005978 ORTHO05D007472 2.0e-204 717.2 1099 40.9
CSS0007221 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 2.7e-201 706.8 746 50.4
Nitab4.5_0003364g0020 Nicotiana tabacum HOM05D005978 ORTHO05D007472 8.7e-200 701.8 758 49.3
Ah.11g042550 Amaranthus hybridus HOM05D005978 ORTHO05D007472 3.6e-193 679.9 786 48.1
Oeu013500.1 Olea europaea HOM05D005978 ORTHO05D007472 5.0e-179 632.9 686 49.7
Mapoly0002s0268 Marchantia polymorpha HOM05D005978 ORTHO05D007472 3.0e-160 570.5 1192 33.0
Dinv04443 Davidia involucrata HOM05D005978 ORTHO05D007472 6.6e-139 499.6 465 54.0
Pp3c9_11110 Physcomitrium patens HOM05D005978 ORTHO05D007472 1.2e-135 488.8 1189 31.0
vmacro21736 Vaccinium macrocarpon HOM05D005978 ORTHO05D007472 1.5e-122 445.3 391 55.2
SMO236G0050 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 1.9e-106 391.7 1122 29.6
CDE04G2732 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 1.9e-101 375.2 614 38.1
Dinv04441 Davidia involucrata HOM05D005978 ORTHO05D007472 7.6e-95 353.2 425 46.8
AagrBONN_evm.TU.Sc2ySwM_228.3882 Anthoceros agrestis HOM05D005978 ORTHO05D007472 1.0e-94 352.8 845 31.0
Ah.11g042540 Amaranthus hybridus HOM05D005978 ORTHO05D007472 8.4e-94 349.7 423 44.2
SMO236G0024 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 2.9e-70 271.6 531 32.6
Nitab4.5_0003364g0080 Nicotiana tabacum HOM05D005978 ORTHO05D007472 4.4e-66 257.7 418 37.3
Nn6g31559 Nelumbo nucifera HOM05D005978 ORTHO05D007472 1.7e-62 245.7 168 67.3
Oeu013502.1 Olea europaea HOM05D005978 ORTHO05D007472 2.5e-61 241.9 168 66.1
SHI07937 Sapria himalayana HOM05D005978 ORTHO05D007472 4.0e-51 208.0 164 62.2
CDE04G3357 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 1.7e-49 202.6 252 43.7
Dinv04442 Davidia involucrata HOM05D005978 ORTHO05D007472 7.0e-48 197.2 180 57.8
arahy.Tifrunner.gnm1.ann1.G030KM Arachis hypogaea HOM05D005978 ORTHO05D007472 2.9e-46 191.8 235 45.1
CBR_g3864 Chara braunii HOM05D000019 ORTHO05D000048 2.8e-44 185.3 995 24.6
CSS0044033 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 2.6e-34 152.1 123 56.9
SMO124G0009 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 1.8e-27 129.4 192 36.5
Gohir.D05G180650 Gossypium hirsutum HOM05D005978 ORTHO05D007472 3.1e-27 128.6 114 53.5
SHI07938 Sapria himalayana HOM05D005978 ORTHO05D007472 2.2e-25 122.5 154 45.5
TAR628G1490 Trochodendron aralioides HOM05D005978 ORTHO05D007472 1.0e-14 87.0 60 56.7
Rhsim06G0014600 Rhododendron simsii HOM05D000267 ORTHO05D002764 6.6e-14 84.3 61 63.9
arahy.Tifrunner.gnm1.ann1.IN83YX Arachis hypogaea HOM05D005978 ORTHO05D007472 4.3e-13 81.6 64 57.8
C07p29320 Brassica napus HOM05D005978 ORTHO05D007472 7.3e-13 80.9 46 76.1
BolC7t43475H Brassica oleracea HOM05D005978 ORTHO05D007472 7.3e-13 80.9 46 76.1
arahy.Tifrunner.gnm1.ann1.HEP796 Arachis hypogaea HOM05D005978 ORTHO05D007472 2.3e-11 75.9 53 64.2
Solyc04g082990.3 Solanum lycopersicum HOM05D005978 ORTHO05D004271 1.7e-09 69.7 78 42.3
Prupe.4G218400 Prunus persica HOM05D005978 ORTHO05D007472 1.4e-08 66.6 51 64.7
SHI07939 Sapria himalayana HOM05D005978 ORTHO05D007472 2.4e-08 65.9 112 39.3


User provided reference genes

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