Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G18140 Aethionema arabicum HOM05D002943 ORTHO05D002685 1.1e-51 208.0 318 100.0
Thhalv10010551m.g Eutrema salsugineum HOM05D002943 ORTHO05D002685 2.9e-41 173.3 318 90.6
THA.LOC104798430 Tarenaya hassleriana HOM05D002943 ORTHO05D002685 3.2e-40 169.9 320 86.9
Carub.0005s1601 Capsella rubella HOM05D002943 ORTHO05D002685 9.4e-40 168.3 318 87.7
Sp5g12420 Schrenkiella parvula HOM05D002943 ORTHO05D002685 1.2e-37 161.4 318 90.9
AT3G49660 Arabidopsis thaliana HOM05D002943 ORTHO05D002685 1.5e-37 161.0 318 89.0
AL5G29510 Arabidopsis lyrata HOM05D002943 ORTHO05D002685 2.0e-37 160.6 318 89.3
CARHR158730 Cardamine hirsuta HOM05D002943 ORTHO05D002685 5.7e-37 159.1 319 86.5
BcaB01g00685 Brassica carinata HOM05D002943 ORTHO05D002685 1.1e-32 144.8 317 88.3
BcaC01g02426 Brassica carinata HOM05D002943 ORTHO05D002685 1.4e-30 137.9 315 87.0
C03p65420 Brassica napus HOM05D002943 ORTHO05D002685 1.4e-30 137.9 315 87.0
BolC3t18794H Brassica oleracea HOM05D002943 ORTHO05D002685 1.4e-30 137.9 315 87.0
Carub.0008s2659 Capsella rubella HOM05D002943 ORTHO05D002685 5.2e-30 136.0 319 88.1
BraA06t25785Z Brassica rapa HOM05D002943 ORTHO05D002685 2.0e-29 134.0 317 86.4
A06p28410 Brassica napus HOM05D002943 ORTHO05D002685 4.4e-29 132.9 316 86.4
ClCG01G018070 Citrullus lanatus HOM05D002943 ORTHO05D002685 1.9e-24 117.5 320 83.8
arahy.Tifrunner.gnm1.ann1.RFJS66 Arachis hypogaea HOM05D002943 ORTHO05D002685 2.5e-24 117.1 317 76.7
Lalb_Chr07g0177661 Lupinus albus HOM05D002943 ORTHO05D002685 3.3e-24 116.7 317 76.0
Phvul.003G104000 Phaseolus vulgaris HOM05D002943 ORTHO05D002685 3.3e-24 116.7 317 76.0
VMungo1215G0795 Vigna mungo HOM05D002943 ORTHO05D002685 3.3e-24 116.7 317 76.0
Ca_14440_v3 Cicer arietinum L. HOM05D002943 ORTHO05D002685 4.3e-24 116.3 317 76.0
Gohir.D11G212900 Gossypium hirsutum HOM05D002943 ORTHO05D002685 4.3e-24 116.3 316 84.8
Gorai.007G228800 Gossypium raimondii HOM05D002943 ORTHO05D002685 4.3e-24 116.3 316 84.8
Medtr4g119620 Medicago truncatula HOM05D002943 ORTHO05D002685 7.3e-24 115.5 327 74.6
arahy.Tifrunner.gnm1.ann1.DT5KC6 Arachis hypogaea HOM05D002943 ORTHO05D002685 9.5e-24 115.2 317 75.7
arahy.Tifrunner.gnm1.ann1.MJC5Q8 Arachis hypogaea HOM05D002943 ORTHO05D002685 9.5e-24 115.2 317 75.7
Gohir.A11G210200 Gossypium hirsutum HOM05D002943 ORTHO05D002685 9.5e-24 115.2 316 84.5
Haze_03949 Corylus avellana HOM05D002943 ORTHO05D002685 3.6e-23 113.2 311 83.0
Cfa006809 Carpinus fangiana HOM05D002943 ORTHO05D002685 4.7e-23 112.8 311 85.5
CiPaw.07G041100 Carya illinoinensis HOM05D002943 ORTHO05D002685 4.7e-23 112.8 323 82.7
Lj4g0007346 Lotus japonicus HOM05D002943 ORTHO05D002685 8.0e-23 112.1 320 83.4
Lalb_Chr13g0303681 Lupinus albus HOM05D002943 ORTHO05D002685 8.0e-23 112.1 317 73.8
Thecc.01G081600 Theobroma cacao HOM05D002943 ORTHO05D002685 1.0e-22 111.7 311 81.4
COL.COLO4_11661 Corchorus olitorius HOM05D002943 ORTHO05D002685 1.8e-22 110.9 310 84.8
CsaV3_6G044600 Cucumis sativus L. HOM05D002943 ORTHO05D002685 4.0e-22 109.8 317 83.6
TPR.G3207 Trifolium pratense HOM05D002943 ORTHO05D002685 4.0e-22 109.8 327 74.0
Manes.12G119800 Manihot esculenta HOM05D002943 ORTHO05D002685 8.9e-22 108.6 315 85.1
Duzib147G1423 Durio zibethinus HOM05D002943 ORTHO05D002685 2.6e-21 107.1 310 83.2
Glyma.07G248900 Glycine max HOM05D002943 ORTHO05D002685 2.6e-21 107.1 324 73.8
TWI74G1409 Tripterygium wilfordii HOM05D002943 ORTHO05D002685 4.4e-21 106.3 312 83.3
Psat0s2006g0120 Pisum sativum HOM05D002943 ORTHO05D002685 5.8e-21 105.9 317 72.2
CANSAT01G2837 Cannabis sativa HOM05D002943 ORTHO05D002685 1.7e-20 104.4 314 83.4
Cpa.g.sc129.34 Carica papaya HOM05D002943 ORTHO05D002685 2.9e-20 103.6 325 72.9
Glyma.17G025400 Glycine max HOM05D002943 ORTHO05D002685 3.7e-20 103.2 311 74.9
Duzib187G0476 Durio zibethinus HOM05D002943 ORTHO05D002685 6.4e-20 102.4 322 82.0
CARHR279680 Cardamine hirsuta HOM05D002943 ORTHO05D002685 8.3e-20 102.1 101 82.2
SalBow3G3920 Salvia bowleyana HOM05D002943 ORTHO05D002685 1.9e-19 100.9 320 78.8
SGA_v2.0_scaffold121G33104 Striga asiatica HOM05D002943 ORTHO05D002685 3.2e-19 100.1 320 76.9
Sc09g0001310 Simmondsia chinensis HOM05D002943 ORTHO05D002685 5.4e-19 99.4 322 79.2
AL8G43350 Arabidopsis lyrata HOM05D000117 ORTHO05D000070 7.0e-19 99.0 110 77.3
AL8G43360 Arabidopsis lyrata HOM05D001456 ORTHO05D013730 7.0e-19 99.0 110 77.3
Sabra07G0007300 Salix brachista HOM05D002943 ORTHO05D002685 1.2e-18 98.2 308 83.8
RcHm_v2.0_Chr2g0109631 Rosa chinensis HOM05D002943 ORTHO05D002685 2.7e-18 97.1 313 74.1
Sed0027180 Sechium edule HOM05D002943 ORTHO05D002685 2.7e-18 97.1 319 80.3
Potri.007G009500 Populus trichocarpa HOM05D002943 ORTHO05D002685 4.6e-18 96.3 311 83.3
TWI53G1603 Tripterygium wilfordii HOM05D002943 ORTHO05D002685 6.0e-18 95.9 310 81.6
GSVIVG01003702001 Vitis vinifera HOM05D002943 ORTHO05D002685 6.0e-18 95.9 313 83.4
AUR62000261 Chenopodium quinoa HOM05D002943 ORTHO05D002685 2.3e-17 94.0 316 66.5
Ah.06g195170 Amaranthus hybridus HOM05D002943 ORTHO05D002685 3.9e-17 93.2 312 76.9
Prupe.6G211800 Prunus persica HOM05D002943 ORTHO05D002685 5.0e-17 92.8 315 73.3
Aqoxy5G01866 Aquilegia oxysepala HOM05D002943 ORTHO05D002685 1.1e-16 91.7 308 82.8
SHI12121 Sapria himalayana HOM05D002943 ORTHO05D002685 1.5e-16 91.3 311 81.0
MD16G1282400 Malus domestica HOM05D002943 ORTHO05D002685 1.9e-16 90.9 314 82.2
Ciclev10026097m.g Citrus clementina HOM05D002943 ORTHO05D002685 3.3e-16 90.1 314 81.5
MD01G1047000 Malus domestica HOM05D002943 ORTHO05D002685 3.3e-16 90.1 314 82.2
Hund07388 Selenicereus undatus HOM05D002943 ORTHO05D002685 4.3e-16 89.7 310 79.4
EL10Ac4g10037 Beta vulgaris HOM05D002943 ORTHO05D002685 5.6e-16 89.4 314 78.0
FvH4_1g18760 Fragaria vesca HOM05D002943 ORTHO05D002685 9.5e-16 88.6 311 82.0
FAN19G1191 Fragaria x ananassa HOM05D002943 ORTHO05D002685 9.5e-16 88.6 311 82.0
Migut.H00305 Erythranthe guttata HOM05D002943 ORTHO05D002685 6.2e-15 85.9 320 80.6
Potri.005G148500 Populus trichocarpa HOM05D002943 ORTHO05D002685 6.2e-15 85.9 310 82.6
FAN23G1457 Fragaria x ananassa HOM05D002943 ORTHO05D002685 1.4e-14 84.7 311 82.0
FAN28G1172 Fragaria x ananassa HOM05D002943 ORTHO05D002685 1.4e-14 84.7 311 82.0
AUR62006609 Chenopodium quinoa HOM05D002943 ORTHO05D002685 1.2e-13 81.6 316 59.2
PGR031G0631 Punica granatum HOM05D002943 ORTHO05D002685 1.2e-13 81.6 312 80.1
QL06p037843 Quercus lobata HOM05D002943 ORTHO05D002685 1.2e-13 81.6 334 57.8
Oeu025000.1 Olea europaea HOM05D002943 ORTHO05D002685 9.8e-13 78.6 319 78.7
Rhsim10G0085400 Rhododendron simsii HOM05D002943 ORTHO05D002685 2.2e-12 77.4 308 76.9
Atru.chr3.1120 Acer truncatum HOM05D002943 ORTHO05D002685 2.4e-11 73.9 129 88.4
MBI16_g14668_MAGBIO Magnolia biondii HOM05D002943 ORTHO05D002685 3.2e-11 73.6 311 77.2
unitig_0.g486 Utricularia gibba HOM05D002943 ORTHO05D002685 5.4e-11 72.8 102 66.7
Actinidia11939 Actinidia chinensis HOM05D002943 ORTHO05D002685 9.2e-11 72.0 308 49.4
Psat0s2006g0160 Pisum sativum HOM05D002943 ORTHO05D002685 1.2e-10 71.6 102 64.7
HanXRQChr14g0447041 Helianthus annuus HOM05D002943 ORTHO05D002685 1.6e-10 71.2 126 88.9
Eucgr.H02400 Eucalyptus grandis HOM05D002943 ORTHO05D002685 2.1e-10 70.9 129 86.8
Nitab4.5_0000396g0220 Nicotiana tabacum HOM05D002943 ORTHO05D002685 4.6e-10 69.7 316 79.1
TAR376G1143 Trochodendron aralioides HOM05D002943 ORTHO05D002685 6.0e-10 69.3 129 87.6
TAR628G0306 Trochodendron aralioides HOM05D002943 ORTHO05D002685 6.0e-10 69.3 129 87.6
ECA238G4010 Erigeron canadensis HOM05D002943 ORTHO05D002685 7.8e-10 68.9 125 88.0
Dinv36997 Davidia involucrata HOM05D002943 ORTHO05D002685 1.0e-09 68.6 317 80.1
Lj4A173G12 Lonicera japonica HOM05D002943 ORTHO05D002685 1.3e-09 68.2 129 86.0
Oeu054736.1 Olea europaea HOM05D002943 ORTHO05D002685 1.3e-09 68.2 83 44.6
Nn1g05949 Nelumbo nucifera HOM05D002943 ORTHO05D002685 1.7e-09 67.8 129 86.8
Hma1.2p1_0996F.1_g245920 Hydrangea macrophylla HOM05D002943 ORTHO05D002685 2.3e-09 67.4 125 88.8
PSO541G4758 Papaver somniferum HOM05D002943 ORTHO05D002685 2.3e-09 67.4 129 86.0
PSO675G4958 Papaver somniferum HOM05D002943 ORTHO05D002685 2.3e-09 67.4 129 86.0
Zm00001eb055840 Zea mays HOM05D002943 ORTHO05D002685 2.3e-09 67.4 321 72.9
Nn1g05606 Nelumbo nucifera HOM05D002943 ORTHO05D002685 3.0e-09 67.0 86 44.2
Oeu012607.1 Olea europaea HOM05D002943 ORTHO05D002685 3.0e-09 67.0 125 86.4
Cc07_g07680 Coffea canephora HOM05D002943 ORTHO05D002685 3.9e-09 66.6 126 87.3
Nitab4.5_0000093g0160 Nicotiana tabacum HOM05D002943 ORTHO05D002685 3.9e-09 66.6 316 78.2
Lsat_1_v5_gn_2_81981 Lactuca sativa HOM05D002943 ORTHO05D002685 8.6e-09 65.5 315 79.0
ATR0332G110 Amborella trichopoda HOM05D002943 ORTHO05D002685 1.1e-08 65.1 129 86.0
CDE06G1770 Ceratophyllum demersum HOM05D002943 ORTHO05D002685 1.1e-08 65.1 129 85.3
Dinv26988 Davidia involucrata HOM05D002943 ORTHO05D002685 1.5e-08 64.7 317 78.2
vmacro05467 Vaccinium macrocarpon HOM05D002943 ORTHO05D002685 1.5e-08 64.7 86 41.9
CDE04G2187 Ceratophyllum demersum HOM05D002943 ORTHO05D002685 1.9e-08 64.3 129 86.0
Lj2C426T10 Lonicera japonica HOM05D002943 ORTHO05D002685 1.9e-08 64.3 84 42.9
Os03g0725400 Oryza sativa ssp. japonica HOM05D002943 ORTHO05D002685 1.9e-08 64.3 315 65.7
Pp3c10_4790 Physcomitrium patens HOM05D009278 ORTHO05D002685 4.3e-08 63.2 122 86.1
Actinidia36393 Actinidia chinensis HOM05D002943 ORTHO05D002685 5.6e-08 62.8 129 84.5
CSS0032407 Camellia sinensis var. sinensis HOM05D002943 ORTHO05D002685 5.6e-08 62.8 86 40.7
ATR0332G039 Amborella trichopoda HOM05D002943 ORTHO05D002685 7.3e-08 62.4 86 41.9
Pp3c14_5700 Physcomitrium patens HOM05D009278 ORTHO05D002685 7.3e-08 62.4 122 85.2
BcaB05g23663 Brassica carinata HOM05D002943 ORTHO05D002685 9.5e-08 62.0 81 42.0
Zm00001eb270960 Zea mays HOM05D005612 ORTHO05D002685 9.5e-08 62.0 85 37.6
Atru.chr5.1459 Acer truncatum HOM05D002943 ORTHO05D002685 1.6e-07 61.2 82 81.7
TWI59G0374 Tripterygium wilfordii HOM05D002943 ORTHO05D002685 2.1e-07 60.8 81 42.0
Ciclev10021263m.g Citrus clementina HOM05D002943 ORTHO05D002685 2.8e-07 60.5 307 73.6
Mapoly0035s0097 Marchantia polymorpha HOM05D002943 ORTHO05D002685 2.8e-07 60.5 124 87.1
Zm00001eb276600 Zea mays HOM05D002943 ORTHO05D002685 4.7e-07 59.7 85 36.5
CANSAT56G2303 Cannabis sativa HOM05D002943 ORTHO05D002685 8.1e-07 58.9 318 54.1
Thhalv10028762m.g Eutrema salsugineum HOM05D002943 ORTHO05D002685 8.1e-07 58.9 81 40.7
AL6G50240 Arabidopsis lyrata HOM05D002943 ORTHO05D002685 1.1e-06 58.5 81 40.7
AL6G50270 Arabidopsis lyrata HOM05D002943 ORTHO05D002685 1.1e-06 58.5 81 40.7
CARHR251070 Cardamine hirsuta HOM05D002943 ORTHO05D002685 1.1e-06 58.5 81 40.7
Pp3c2_20770 Physcomitrium patens HOM05D009278 ORTHO05D002685 1.1e-06 58.5 81 75.3
Cpa.g.sc52.53 Carica papaya HOM05D002943 ORTHO05D002685 1.4e-06 58.2 81 81.5
Aa31LG5G2370 Aethionema arabicum HOM05D000358 ORTHO05D009346 1.8e-06 57.8 81 82.7
BcaC03g16173 Brassica carinata HOM05D002943 ORTHO05D002685 1.8e-06 57.8 82 39.0
C02p39070 Brassica napus HOM05D002943 ORTHO05D002685 1.8e-06 57.8 82 39.0
BolC2t09917H Brassica oleracea HOM05D002943 ORTHO05D002685 1.8e-06 57.8 82 39.0
CSS0015908 Camellia sinensis var. sinensis HOM05D002943 ORTHO05D002685 1.8e-06 57.8 81 77.8
Sp6g02690 Schrenkiella parvula HOM05D002943 ORTHO05D002685 1.8e-06 57.8 81 39.5
SMO119G0268 Selaginella moellendorffii HOM05D002943 ORTHO05D002685 1.8e-06 57.8 125 84.8
AT4G02730 Arabidopsis thaliana HOM05D002943 ORTHO05D002685 2.3e-06 57.4 81 39.5
A02p24970 Brassica napus HOM05D002943 ORTHO05D002685 2.3e-06 57.4 82 39.0
BraA02t07487Z Brassica rapa HOM05D002943 ORTHO05D002685 2.3e-06 57.4 82 39.0
Manes.01G207000 Manihot esculenta HOM05D002943 ORTHO05D002685 2.3e-06 57.4 81 77.8
vmacro02583 Vaccinium macrocarpon HOM05D002943 ORTHO05D002685 2.3e-06 57.4 81 39.5
GSVIVG01001162001 Vitis vinifera HOM05D002943 ORTHO05D002685 2.3e-06 57.4 81 40.7
Zm00001eb325000 Zea mays HOM05D002943 ORTHO05D002685 2.3e-06 57.4 81 39.5
Zm00001eb325010 Zea mays HOM05D002943 ORTHO05D002685 2.3e-06 57.4 81 39.5
PSO210G2619 Papaver somniferum HOM05D002943 ORTHO05D002685 3.1e-06 57.0 82 80.5
PSO761G0421 Papaver somniferum HOM05D002943 ORTHO05D002685 3.1e-06 57.0 82 80.5
Aqoxy2G03372 Aquilegia oxysepala HOM05D002943 ORTHO05D002685 4.0e-06 56.6 81 39.5
DCAR_012486 Daucus carota HOM05D002943 ORTHO05D002685 4.0e-06 56.6 81 38.3
Lsat_1_v5_gn_9_3501 Lactuca sativa HOM05D002943 ORTHO05D002685 4.0e-06 56.6 81 38.3
PGR044G0058 Punica granatum HOM05D002943 ORTHO05D002685 4.0e-06 56.6 83 37.3
RcHm_v2.0_Chr6g0290821 Rosa chinensis HOM05D002943 ORTHO05D002685 4.0e-06 56.6 81 39.5
HPP92_020621 Vanilla planifolia HOM05D002943 ORTHO05D002685 4.0e-06 56.6 85 71.8
Carub.0006s3437 Capsella rubella HOM05D002943 ORTHO05D002685 5.2e-06 56.2 81 38.3
Ciclev10033651m.g Citrus clementina HOM05D002943 ORTHO05D002685 5.2e-06 56.2 104 38.5
Solyc02g091790.3 Solanum lycopersicum HOM05D002943 ORTHO05D002685 5.2e-06 56.2 316 77.5
Sopen02g036370 Solanum pennellii HOM05D002943 ORTHO05D002685 5.2e-06 56.2 316 77.5
CiPaw.07G090800 Carya illinoinensis HOM05D002943 ORTHO05D002685 6.8e-06 55.8 81 39.5
Eucgr.K03366 Eucalyptus grandis HOM05D002943 ORTHO05D002685 6.8e-06 55.8 81 38.3
MD03G1263200 Malus domestica HOM05D002943 ORTHO05D002685 6.8e-06 55.8 79 36.7
Sed0026548 Sechium edule HOM05D002943 ORTHO05D002685 6.8e-06 55.8 79 38.0
PGSC0003DMG401030621 Solanum tuberosum HOM05D002943 ORTHO05D002685 6.8e-06 55.8 62 50.0
AagrBONN_evm.TU.Sc2ySwM_362.2759 Anthoceros agrestis HOM05D002943 ORTHO05D002685 8.9e-06 55.5 81 76.5
VMungo0720G0375 Vigna mungo HOM05D002943 ORTHO05D002685 8.9e-06 55.5 309 41.1


User provided reference genes

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