Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G12090 Aethionema arabicum HOM05D003777 ORTHO05D004690 0.0e+00 1158.3 657 100.0
Sp5g22670 Schrenkiella parvula HOM05D003777 ORTHO05D004690 3.1e-279 964.9 663 80.8
BcaC08g46176 Brassica carinata HOM05D003777 ORTHO05D004690 1.0e-277 959.9 661 80.3
C06p42580 Brassica napus HOM05D003777 ORTHO05D004690 1.0e-277 959.9 661 80.3
BolC6t39181H Brassica oleracea HOM05D003777 ORTHO05D004690 1.0e-277 959.9 661 80.3
A07p32470 Brassica napus HOM05D003777 ORTHO05D004690 1.9e-276 955.7 658 81.0
Thhalv10018246m.g Eutrema salsugineum HOM05D003777 ORTHO05D004690 7.9e-275 950.3 664 80.3
BcaB03g15177 Brassica carinata HOM05D003777 ORTHO05D004690 8.7e-274 946.8 663 79.6
AT1G67680 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 1.3e-269 932.9 670 77.9
THA.LOC104825526 Tarenaya hassleriana HOM05D003777 ORTHO05D004690 8.5e-269 930.2 666 78.2
AL2G26380 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 1.4e-268 929.5 658 78.9
A07p34190 Brassica napus HOM05D003777 ORTHO05D004690 2.4e-263 912.1 661 77.3
CARHR060270 Cardamine hirsuta HOM05D003777 ORTHO05D004690 1.0e-261 906.7 619 80.5
Carub.0002s1406 Capsella rubella HOM05D003777 ORTHO05D004690 1.3e-261 906.4 662 76.4
AT1G67650 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 3.7e-248 861.7 668 72.8
QL03p055332 Quercus lobata HOM05D003777 ORTHO05D004690 4.1e-247 858.2 628 74.8
CiPaw.05G173500 Carya illinoinensis HOM05D003777 ORTHO05D004690 4.5e-246 854.7 627 74.5
Potri.006G216400 Populus trichocarpa HOM05D003777 ORTHO05D004690 4.8e-240 834.7 667 71.5
Thecc.02G272700 Theobroma cacao HOM05D003777 ORTHO05D004690 6.3e-240 834.3 671 68.9
TWI36G1566 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 1.1e-239 833.6 626 72.2
CANSAT01G1767 Cannabis sativa HOM05D003777 ORTHO05D004690 1.4e-239 833.2 624 72.6
Nitab4.5_0002026g0090 Nicotiana tabacum HOM05D003777 ORTHO05D004690 5.9e-238 827.8 665 69.3
Nitab4.5_0000492g0120 Nicotiana tabacum HOM05D003777 ORTHO05D004690 7.7e-238 827.4 665 69.2
CSS0004768 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 6.5e-237 824.3 667 72.0
Sed0005823 Sechium edule HOM05D003777 ORTHO05D004690 8.5e-237 823.9 626 71.2
TWI75G0300 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 1.1e-236 823.5 623 72.4
BraA07t31048Z Brassica rapa HOM05D003777 ORTHO05D004690 2.5e-236 822.4 560 79.8
Cpa.g.sc86.2 Carica papaya HOM05D003777 ORTHO05D004690 2.5e-236 822.4 674 71.1
Sabra06G0166800 Salix brachista HOM05D003777 ORTHO05D004690 5.5e-236 821.2 623 71.9
Solyc11g062270.2 Solanum lycopersicum HOM05D003777 ORTHO05D004690 9.5e-236 820.5 624 72.3
Phvul.002G176900 Phaseolus vulgaris HOM05D003777 ORTHO05D004690 1.2e-235 820.1 666 68.2
TAR374G1267 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.0e-234 817.0 626 71.4
TAR374G0928 Trochodendron aralioides HOM05D003777 ORTHO05D004690 8.8e-234 813.9 626 71.2
Manes.12G016400 Manihot esculenta HOM05D003777 ORTHO05D004690 5.7e-233 811.2 666 70.4
Dinv18168 Davidia involucrata HOM05D003777 ORTHO05D004690 7.5e-233 810.8 676 67.9
Glyma.05G144700 Glycine max HOM05D003777 ORTHO05D004690 7.5e-233 810.8 620 70.0
Psat7g080080 Pisum sativum HOM05D003777 ORTHO05D004690 9.8e-233 810.4 621 69.6
Sopen11g024250 Solanum pennellii HOM05D003777 ORTHO05D004690 2.2e-232 809.3 624 71.5
Gohir.D05G312600 Gossypium hirsutum HOM05D003777 ORTHO05D004690 7.0e-231 804.3 671 68.1
PSO170G4787 Papaver somniferum HOM05D003777 ORTHO05D004690 1.2e-230 803.5 671 68.9
Duzib248G0478 Durio zibethinus HOM05D003777 ORTHO05D004690 4.5e-230 801.6 672 67.6
Manes.13G014300 Manihot esculenta HOM05D003777 ORTHO05D004690 1.0e-229 800.4 625 70.9
GSVIVG01010320001 Vitis vinifera HOM05D003777 ORTHO05D004690 1.0e-229 800.4 608 72.0
Cfa009302 Carpinus fangiana HOM05D003777 ORTHO05D004690 1.7e-229 799.7 674 70.0
Gorai.009G334100 Gossypium raimondii HOM05D003777 ORTHO05D004690 2.3e-229 799.3 671 68.9
Gohir.A05G311500 Gossypium hirsutum HOM05D003777 ORTHO05D004690 3.3e-228 795.4 671 68.0
Hund25014 Selenicereus undatus HOM05D003777 ORTHO05D004690 4.3e-228 795.0 614 70.2
MSTRG.12471 Avicennia marina HOM05D003777 ORTHO05D004690 7.3e-228 794.3 625 69.6
MELO3C011898.2 Cucumis melo HOM05D003777 ORTHO05D004690 1.2e-227 793.5 623 70.0
Lj4g0007172 Lotus japonicus HOM05D003777 ORTHO05D004690 1.6e-227 793.1 622 69.3
Medtr8g079990 Medicago truncatula HOM05D003777 ORTHO05D004690 2.8e-227 792.3 624 68.1
CAN.G487.1 Capsicum annuum HOM05D003777 ORTHO05D004690 3.6e-227 792.0 663 67.4
Lsat_1_v5_gn_2_96961 Lactuca sativa HOM05D003777 ORTHO05D004690 2.3e-226 789.3 661 68.1
BcaB03g15368 Brassica carinata HOM05D003777 ORTHO05D004690 4.0e-226 788.5 657 70.0
CsaV3_5G030580 Cucumis sativus L. HOM05D003777 ORTHO05D004690 5.2e-226 788.1 671 66.6
Duzib268G0959 Durio zibethinus HOM05D003777 ORTHO05D004690 1.5e-225 786.6 671 65.6
Atru.chr11.2223 Acer truncatum HOM05D003777 ORTHO05D004690 2.6e-225 785.8 606 70.3
DCAR_021624 Daucus carota HOM05D003777 ORTHO05D004690 2.2e-224 782.7 624 68.1
Oeu015952.1 Olea europaea HOM05D003777 ORTHO05D004690 2.9e-224 782.3 661 67.8
Ca_18071_v3 Cicer arietinum L. HOM05D003777 ORTHO05D004690 1.1e-223 780.4 624 67.5
Peaxi162Scf00029g02527 Petunia axillaris HOM05D003777 ORTHO05D004690 1.4e-223 780.0 620 69.2
PSO063G1619 Papaver somniferum HOM05D003777 ORTHO05D004690 1.8e-223 779.6 626 68.5
Glyma.08G101100 Glycine max HOM05D003777 ORTHO05D004690 5.4e-223 778.1 620 68.4
arahy.Tifrunner.gnm1.ann1.9WV3XJ Arachis hypogaea HOM05D003777 ORTHO05D004690 7.0e-223 777.7 621 67.8
ECA233G1683 Erigeron canadensis HOM05D003777 ORTHO05D004690 1.2e-222 776.9 665 68.9
Actinidia08096 Actinidia chinensis HOM05D003777 ORTHO05D004690 3.5e-222 775.4 644 67.2
arahy.Tifrunner.gnm1.ann1.SED4J7 Arachis hypogaea HOM05D003777 ORTHO05D004690 3.5e-222 775.4 659 65.3
vmacro01091 Vaccinium macrocarpon HOM05D003777 ORTHO05D004690 3.0e-221 772.3 680 67.2
Aqoxy5G03557 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 8.6e-221 770.8 634 67.5
SGA_v2.0_scaffold247G44863 Striga asiatica HOM05D003777 ORTHO05D004690 1.5e-220 770.0 692 64.2
ClCG05G026250 Citrullus lanatus HOM05D003777 ORTHO05D004690 2.5e-220 769.2 673 65.2
PGR102G0273 Punica granatum HOM05D003777 ORTHO05D004690 5.6e-220 768.1 668 66.2
arahy.Tifrunner.gnm1.ann1.35MH8V Arachis hypogaea HOM05D003777 ORTHO05D004690 1.2e-219 766.9 638 66.1
VMungo0251G0828 Vigna mungo HOM05D003777 ORTHO05D004690 4.7e-219 765.0 708 62.7
arahy.Tifrunner.gnm1.ann1.238UV6 Arachis hypogaea HOM05D003777 ORTHO05D004690 8.9e-218 760.8 622 66.9
MD13G1110100 Malus domestica HOM05D003777 ORTHO05D004690 3.4e-217 758.8 671 64.5
TPR.G17105 Trifolium pratense HOM05D003777 ORTHO05D004690 3.4e-217 758.8 668 63.3
Ah.10g034950 Amaranthus hybridus HOM05D003777 ORTHO05D004690 1.7e-216 756.5 626 66.8
Dinv11003 Davidia involucrata HOM05D003777 ORTHO05D004690 4.9e-216 755.0 667 64.0
AUR62017151 Chenopodium quinoa HOM05D003777 ORTHO05D004690 8.3e-216 754.2 661 63.5
HanXRQChr04g0126141 Helianthus annuus HOM05D003777 ORTHO05D004690 1.9e-215 753.1 623 67.1
Hma1.2p1_0079F.1_g041650 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 5.4e-215 751.5 664 64.8
DCAR_021625 Daucus carota HOM05D003777 ORTHO05D004690 2.0e-214 749.6 625 66.6
MD16G1110000 Malus domestica HOM05D003777 ORTHO05D004690 1.7e-213 746.5 671 63.6
Eucgr.B03455 Eucalyptus grandis HOM05D003777 ORTHO05D004690 3.9e-213 745.3 672 62.9
Lalb_Chr07g0187251 Lupinus albus HOM05D003777 ORTHO05D004690 5.0e-213 745.0 665 64.1
Migut.D00587 Erythranthe guttata HOM05D003777 ORTHO05D004690 5.6e-212 741.5 602 68.4
RcHm_v2.0_Chr4g0431581 Rosa chinensis HOM05D003777 ORTHO05D004690 4.0e-210 735.3 666 64.7
AUR62035656 Chenopodium quinoa HOM05D003777 ORTHO05D004690 8.9e-210 734.2 657 62.3
FvH4_4g24580 Fragaria vesca HOM05D003777 ORTHO05D004690 1.2e-209 733.8 667 64.2
FAN12G3799 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.2e-209 733.8 667 64.2
FAN07G0030 Fragaria x ananassa HOM05D003777 ORTHO05D004690 2.0e-209 733.0 666 63.8
Rhsim12G0035800 Rhododendron simsii HOM05D003777 ORTHO05D004690 2.0e-209 733.0 750 58.9
RcHm_v2.0_Chr4g0431561 Rosa chinensis HOM05D003777 ORTHO05D004690 9.8e-209 730.7 666 64.4
EL10Ac9g22111 Beta vulgaris HOM05D003777 ORTHO05D004690 1.4e-207 726.9 660 63.0
Carub.0002s1402 Capsella rubella HOM05D003777 ORTHO05D004690 2.4e-207 726.1 538 76.2
FAN17G2971 Fragaria x ananassa HOM05D003777 ORTHO05D004690 2.1e-206 723.0 649 64.1
FAN22G1648 Fragaria x ananassa HOM05D003777 ORTHO05D004690 4.6e-206 721.8 667 63.3
AL2G26340 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 1.7e-205 719.9 626 66.9
COL.COLO4_23602 Corchorus olitorius HOM05D003777 ORTHO05D004690 1.1e-204 717.2 623 65.0
Nitab4.5_0002757g0020 Nicotiana tabacum HOM05D003777 ORTHO05D004690 2.1e-203 713.0 620 65.2
TPR.G27143 Trifolium pratense HOM05D003777 ORTHO05D004690 5.2e-202 708.4 550 67.1
Ciclev10030955m.g Citrus clementina HOM05D003777 ORTHO05D004690 2.0e-201 706.4 625 65.8
Prupe.1G234800 Prunus persica HOM05D003777 ORTHO05D004690 2.6e-201 706.1 573 68.9
unitig_744.g24046 Utricularia gibba HOM05D003777 ORTHO05D004690 7.6e-201 704.5 638 63.5
CSS0018349 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 8.6e-197 691.0 524 70.8
CDE07G0923 Ceratophyllum demersum HOM05D003777 ORTHO05D004690 9.0e-194 681.0 626 62.0
HPP92_012793 Vanilla planifolia HOM05D003777 ORTHO05D004690 1.1e-191 674.1 625 61.3
Actinidia30683 Actinidia chinensis HOM05D003777 ORTHO05D004690 6.6e-189 664.8 668 60.3
BolC2t08468H Brassica oleracea HOM05D003777 ORTHO05D004690 6.6e-189 664.8 610 64.8
Os01g0889000 Oryza sativa ssp. japonica HOM05D003777 ORTHO05D004690 8.7e-189 664.5 654 60.7
MBI11_g31858_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 3.6e-187 659.1 681 58.9
ATR0824G106 Amborella trichopoda HOM05D003777 ORTHO05D004690 8.1e-187 657.9 667 57.4
C06p38540 Brassica napus HOM05D003777 ORTHO05D004690 6.0e-182 641.7 449 78.0
Sed0021346 Sechium edule HOM05D003777 ORTHO05D004690 3.3e-180 636.0 552 65.6
PGSC0003DMG400032494 Solanum tuberosum HOM05D003777 ORTHO05D004690 9.9e-177 624.4 484 69.4
Nitab4.5_0001925g0190 Nicotiana tabacum HOM05D003777 ORTHO05D004690 4.6e-174 615.5 607 59.3
Sc04g0009890 Simmondsia chinensis HOM05D003777 ORTHO05D004690 2.5e-172 609.8 507 67.5
Lj2C633G4 Lonicera japonica HOM05D003777 ORTHO05D004690 6.7e-165 585.1 496 64.5
BolC6t38947H Brassica oleracea HOM05D003777 ORTHO05D004690 5.1e-157 558.9 407 75.7
SHI17928 Sapria himalayana HOM05D003777 ORTHO05D004690 2.2e-144 516.9 625 52.3
Lalb_Chr12g0206451 Lupinus albus HOM05D003777 ORTHO05D004690 1.2e-142 511.1 458 64.2
Mapoly0007s0138 Marchantia polymorpha HOM05D003777 ORTHO05D004690 6.7e-141 505.4 615 47.3
Lalb_Chr12g0206431 Lupinus albus HOM05D003777 ORTHO05D004690 1.3e-139 501.1 450 64.2
CSS0034811 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.0e-136 491.5 445 67.4
Zm00001eb145240 Zea mays HOM05D003777 ORTHO05D004690 6.5e-136 488.8 492 59.3
SEGI_14731 Sequoiadendron giganteum HOM05D003777 ORTHO05D004690 2.5e-135 486.9 555 51.5
C02p23330 Brassica napus HOM05D003777 ORTHO05D004690 9.4e-135 485.0 421 66.0
Pp3c19_7700 Physcomitrium patens HOM05D003777 ORTHO05D004690 1.4e-133 481.1 633 45.7
SMO356G0370 Selaginella moellendorffii HOM05D003777 ORTHO05D004690 1.4e-117 427.9 627 46.4
Lalb_Chr12g0206401 Lupinus albus HOM05D003777 ORTHO05D004690 1.7e-112 411.0 331 65.0
CBR_g26341 Chara braunii HOM05D003777 ORTHO05D004690 3.2e-106 390.2 635 42.2
TAR622G1358 Trochodendron aralioides HOM05D003777 ORTHO05D004690 9.8e-100 368.6 339 65.2
AUR62017138 Chenopodium quinoa HOM05D003777 ORTHO05D004690 6.2e-86 322.8 345 54.2
BraA07t30871Z Brassica rapa HOM05D003777 ORTHO05D004690 2.9e-83 313.9 207 78.3
MCO13G157 Micromonas commoda HOM05D003777 ORTHO05D004690 1.1e-69 268.9 642 34.7
Oeu007469.1 Olea europaea HOM05D003777 ORTHO05D004690 2.4e-69 267.7 325 54.2
CSS0039153 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 2.0e-68 264.6 212 67.5
ECA238G3243 Erigeron canadensis HOM05D003777 ORTHO05D004690 2.1e-62 244.6 224 59.8
PGSC0003DMG400024128 Solanum tuberosum HOM05D003777 ORTHO05D004690 3.4e-60 237.3 188 64.4
TAR622G0547 Trochodendron aralioides HOM05D003777 ORTHO05D004690 7.9e-57 226.1 168 68.5
Hma1.2p1_0075F.1_g039220 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 9.6e-55 219.2 240 53.8
PGSC0003DMG400017991 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.3e-54 218.8 222 57.7
Cre03.g182500 Chlamydomonas reinhardtii HOM05D003777 ORTHO05D004690 4.8e-54 216.9 708 30.1
Nn4g21997 Nelumbo nucifera HOM05D003777 ORTHO05D004690 5.3e-53 213.4 163 75.5
Solyc10g044443.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 2.0e-52 211.5 176 65.3
Sopen01g018830 Solanum pennellii HOM05D003777 ORTHO05D004690 8.4e-51 206.1 176 63.1
Psat3g102200 Pisum sativum HOM05D003777 ORTHO05D004690 3.5e-49 200.7 155 67.1
Psat5g044680 Pisum sativum HOM05D003777 ORTHO05D004690 2.3e-48 198.0 155 67.1
PGSC0003DMG400024126 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.9e-47 194.9 158 70.9
PRCOL_00006597 Prasinoderma coloniale HOM05D003777 ORTHO05D004690 4.8e-46 190.3 644 31.1
Aqoxy6G02118 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 8.5e-43 179.5 126 73.8
Haze_17766 Corylus avellana HOM05D001576 ORTHO05D000401 1.1e-39 169.1 117 72.6
Sopen01g018820 Solanum pennellii HOM05D003777 ORTHO05D004690 7.4e-39 166.4 173 56.1
CAN.G1295.1 Capsicum annuum HOM05D003777 ORTHO05D004690 4.2e-34 150.6 148 58.1
Aqoxy6G02120 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 4.4e-31 140.6 136 62.5
Psat3g103880 Pisum sativum HOM05D003777 ORTHO05D004690 1.1e-29 136.0 189 43.9
Lalb_Chr12g0206421 Lupinus albus HOM05D003777 ORTHO05D004690 7.0e-29 133.3 109 63.3
Lalb_Chr12g0206411 Lupinus albus HOM05D003777 ORTHO05D004690 1.2e-28 132.5 92 72.8
Lalb_Chr12g0206441 Lupinus albus HOM05D003777 ORTHO05D004690 1.2e-28 132.5 92 72.8
Lalb_Chr12g0206461 Lupinus albus HOM05D003777 ORTHO05D004690 1.2e-28 132.5 92 72.8
CAN.G1310.4 Capsicum annuum HOM05D003777 ORTHO05D004690 2.2e-27 128.3 90 73.3
C06p38550 Brassica napus HOM05D003777 ORTHO05D004690 3.7e-22 110.9 119 64.7
Aqoxy6G02119 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 4.8e-22 110.5 94 63.8
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 2.4e-21 108.2 94 62.8
MBI11_g11081_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 3.8e-19 100.9 97 57.7
MBI11_g45427_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 2.5e-18 98.2 94 58.5
TAR622G0255 Trochodendron aralioides HOM05D003777 ORTHO05D004690 7.2e-18 96.7 90 60.0
BcaC03g14865 Brassica carinata HOM05D003777 ORTHO05D004690 4.7e-17 94.0 74 67.6
PGSC0003DMG400024133 Solanum tuberosum HOM05D003777 ORTHO05D004690 3.3e-15 87.8 58 77.6
Solyc01g047580.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 2.8e-14 84.7 116 47.4
SHI17930 Sapria himalayana HOM05D003777 ORTHO05D012379 4.8e-14 84.0 93 54.8
BcaC03g14858 Brassica carinata HOM05D003777 ORTHO05D004690 1.1e-13 82.8 55 72.7
Psat4g130680 Pisum sativum HOM05D003777 ORTHO05D037365 7.0e-13 80.1 86 46.5
Nitab4.5_0004629g0100 Nicotiana tabacum HOM05D003777 ORTHO05D004690 3.5e-12 77.8 49 77.6
SEGI_18986 Sequoiadendron giganteum HOM05D003777 ORTHO05D000001 1.1e-10 72.8 82 46.3
CAN.G151.20 Capsicum annuum HOM05D000329 ORTHO05D000833 1.4e-08 65.9 48 70.8
Nitab4.5_0004750g0060 Nicotiana tabacum HOM05D003777 ORTHO05D012379 3.4e-07 61.2 104 39.4


User provided reference genes

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