Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G3420 Aethionema arabicum HOM05D004585 ORTHO05D005640 5.8e-121 437.6 220 100.0
Thhalv10014607m.g Eutrema salsugineum HOM05D004585 ORTHO05D005640 3.8e-96 355.1 222 78.4
CARHR208690 Cardamine hirsuta HOM05D004585 ORTHO05D005640 3.2e-95 352.1 223 76.7
Sp6g38180 Schrenkiella parvula HOM05D004585 ORTHO05D005640 3.9e-93 345.1 223 74.9
BraA02t04819Z Brassica rapa HOM05D004585 ORTHO05D005640 6.6e-93 344.4 220 74.5
C09p72190 Brassica napus HOM05D004585 ORTHO05D005640 3.3e-92 342.0 224 75.0
BolC9t59963H Brassica oleracea HOM05D004585 ORTHO05D005640 3.3e-92 342.0 224 75.0
C02p02000 Brassica napus HOM05D004585 ORTHO05D005640 1.6e-91 339.7 224 74.1
Carub.0006s0352 Capsella rubella HOM05D004585 ORTHO05D005640 2.1e-91 339.3 221 75.6
THA.LOC104816458 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 2.1e-91 339.3 220 76.4
BcaC06g32168 Brassica carinata HOM05D004585 ORTHO05D005640 2.8e-91 339.0 224 74.6
BcaC03g12939 Brassica carinata HOM05D004585 ORTHO05D005640 3.6e-91 338.6 224 73.7
A10p31500 Brassica napus HOM05D004585 ORTHO05D005640 3.6e-91 338.6 224 74.6
BraA10t45196Z Brassica rapa HOM05D004585 ORTHO05D005640 3.6e-91 338.6 224 74.6
AL6G14230 Arabidopsis lyrata HOM05D004585 ORTHO05D005640 2.6e-89 332.4 222 74.3
THA.LOC104823192 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 1.7e-88 329.7 222 72.5
AT5G04600 Arabidopsis thaliana HOM05D004585 ORTHO05D005640 1.6e-86 323.2 221 72.4
ClCG08G008100 Citrullus lanatus HOM05D004585 ORTHO05D005640 1.9e-84 316.2 220 69.1
MELO3C019883.2 Cucumis melo HOM05D004585 ORTHO05D005640 7.4e-84 314.3 220 69.1
Thecc.10G109700 Theobroma cacao HOM05D004585 ORTHO05D005640 2.8e-83 312.4 220 70.0
Thecc.K0008500 Theobroma cacao HOM05D004585 ORTHO05D005640 2.8e-83 312.4 220 70.0
Sed0007729 Sechium edule HOM05D004585 ORTHO05D005640 3.1e-82 308.9 220 67.3
Actinidia18578 Actinidia chinensis HOM05D004585 ORTHO05D005640 6.9e-82 307.8 220 68.6
Sed0016970 Sechium edule HOM05D004585 ORTHO05D005640 6.9e-82 307.8 220 67.7
Phvul.005G089300 Phaseolus vulgaris HOM05D004585 ORTHO05D005640 9.0e-82 307.4 218 68.8
TPR.G4853 Trifolium pratense HOM05D004585 ORTHO05D005640 1.5e-81 306.6 218 67.9
Cfa011225 Carpinus fangiana HOM05D004585 ORTHO05D005640 2.0e-81 306.2 220 68.2
Gohir.D13G012100 Gossypium hirsutum HOM05D004585 ORTHO05D005640 2.0e-81 306.2 220 68.6
CsaV3_6G004080 Cucumis sativus L. HOM05D004585 ORTHO05D005640 3.4e-81 305.4 220 66.8
Dinv20840 Davidia involucrata HOM05D004585 ORTHO05D005640 3.4e-81 305.4 220 67.7
Gorai.013G013300 Gossypium raimondii HOM05D004585 ORTHO05D005640 3.4e-81 305.4 220 68.6
Gohir.A13G011400 Gossypium hirsutum HOM05D004585 ORTHO05D005640 4.5e-81 305.1 220 68.6
Hma1.2p1_0567F.1_g180100 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 1.3e-80 303.5 221 70.1
PGR142G4346 Punica granatum HOM05D004585 ORTHO05D005640 1.7e-80 303.1 218 67.4
arahy.Tifrunner.gnm1.ann1.48LUDE Arachis hypogaea HOM05D004585 ORTHO05D005640 2.2e-80 302.8 219 65.8
CSS0035600 Camellia sinensis var. sinensis HOM05D000239 ORTHO05D000484 2.2e-80 302.8 221 68.3
Haze_02611 Corylus avellana HOM05D004585 ORTHO05D005640 2.2e-80 302.8 220 67.7
TWI38G0710 Tripterygium wilfordii HOM05D004585 ORTHO05D005640 2.9e-80 302.4 221 66.5
arahy.Tifrunner.gnm1.ann1.CB8VHN Arachis hypogaea HOM05D004585 ORTHO05D005640 6.5e-80 301.2 219 65.8
Rhsim03G0106100 Rhododendron simsii HOM05D004585 ORTHO05D005640 1.4e-79 300.1 220 67.3
Eucgr.G02711 Eucalyptus grandis HOM05D004585 ORTHO05D005640 3.2e-79 298.9 221 64.7
Sabra10G0182000 Salix brachista HOM05D004585 ORTHO05D005640 3.2e-79 298.9 220 65.9
Atru.chr12.969 Acer truncatum HOM05D004585 ORTHO05D005640 4.2e-79 298.5 220 66.4
Potri.010G234800 Populus trichocarpa HOM05D004585 ORTHO05D005640 4.2e-79 298.5 220 66.4
Cfa013557 Carpinus fangiana HOM05D004585 ORTHO05D005640 5.5e-79 298.1 220 66.8
Duzib128G1105 Durio zibethinus HOM05D004585 ORTHO05D005640 7.1e-79 297.7 225 66.7
Manes.05G202500 Manihot esculenta HOM05D004585 ORTHO05D005640 2.1e-78 296.2 220 65.9
Psat6g221600 Pisum sativum HOM05D004585 ORTHO05D005640 2.1e-78 296.2 218 66.1
Lj6g0005217 Lotus japonicus HOM05D004585 ORTHO05D005640 3.5e-78 295.4 217 64.1
vmacro21510 Vaccinium macrocarpon HOM05D004585 ORTHO05D005640 3.5e-78 295.4 220 65.9
Ciclev10013752m.g Citrus clementina HOM05D004585 ORTHO05D005640 6.0e-78 294.7 219 66.7
VMungo1080G1669 Vigna mungo HOM05D004585 ORTHO05D005640 7.9e-78 294.3 218 65.6
Glyma.09G111400 Glycine max HOM05D004585 ORTHO05D005640 1.3e-77 293.5 222 64.9
TAR633G1318 Trochodendron aralioides HOM05D004585 ORTHO05D005640 1.3e-77 293.5 221 65.2
Oeu027977.1 Olea europaea HOM05D004585 ORTHO05D005640 1.8e-77 293.1 221 65.6
Actinidia06707 Actinidia chinensis HOM05D004585 ORTHO05D005640 3.0e-77 292.4 221 66.5
Glyma.02G173000 Glycine max HOM05D004585 ORTHO05D005640 3.9e-77 292.0 220 67.3
Medtr1g108290 Medicago truncatula HOM05D004585 ORTHO05D005640 1.1e-76 290.4 218 65.1
Ca_04982_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 1.5e-76 290.0 218 64.7
Ca_11096_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 1.5e-76 290.0 218 64.7
PSO675G5749 Papaver somniferum HOM05D004585 ORTHO05D005640 1.5e-76 290.0 226 64.2
Hma1.2p1_0026F.1_g016750 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 1.9e-76 289.7 221 68.3
Sopen11g026360 Solanum pennellii HOM05D004585 ORTHO05D005640 1.9e-76 289.7 218 64.7
CANSAT56G4487 Cannabis sativa HOM05D004585 ORTHO05D005640 2.5e-76 289.3 216 63.4
PSO717G0039 Papaver somniferum HOM05D004585 ORTHO05D005640 3.3e-76 288.9 228 64.5
TAR633G2635 Trochodendron aralioides HOM05D004585 ORTHO05D005640 4.3e-76 288.5 217 65.4
Sopen06g031130 Solanum pennellii HOM05D004585 ORTHO05D005640 5.7e-76 288.1 221 65.2
GSVIVG01021851001 Vitis vinifera HOM05D004585 ORTHO05D005640 5.7e-76 288.1 220 66.8
PGSC0003DMG400000462 Solanum tuberosum HOM05D004585 ORTHO05D005640 7.4e-76 287.7 218 64.2
Cc02_g10240 Coffea canephora HOM05D004585 ORTHO05D005640 1.3e-75 287.0 222 64.4
PSO173G0033 Papaver somniferum HOM05D004585 ORTHO05D005640 2.1e-75 286.2 228 63.6
Prupe.1G580700 Prunus persica HOM05D004585 ORTHO05D005640 8.2e-75 284.3 214 65.9
Nitab4.5_0000442g0080 Nicotiana tabacum HOM05D004585 ORTHO05D005640 1.1e-74 283.9 218 64.2
PGSC0003DMG400007128 Solanum tuberosum HOM05D004585 ORTHO05D005640 1.1e-74 283.9 221 64.7
Nn3g20167 Nelumbo nucifera HOM05D004585 ORTHO05D005640 1.8e-74 283.1 222 64.0
ECA238G4124 Erigeron canadensis HOM05D004585 ORTHO05D005640 2.4e-74 282.7 218 61.9
HanXRQChr10g0319081 Helianthus annuus HOM05D004585 ORTHO05D005640 2.4e-74 282.7 207 64.3
Lalb_Chr14g0365991 Lupinus albus HOM05D004585 ORTHO05D005640 2.4e-74 282.7 219 63.5
Peaxi162Scf00150g00411 Petunia axillaris HOM05D004585 ORTHO05D005640 2.4e-74 282.7 218 63.8
CiPaw.01G204400 Carya illinoinensis HOM05D004585 ORTHO05D005640 3.1e-74 282.3 220 64.1
Cpa.g.sc128.48 Carica papaya HOM05D004585 ORTHO05D005640 4.1e-74 282.0 203 67.0
Lalb_Chr22g0354511 Lupinus albus HOM05D004585 ORTHO05D005640 6.9e-74 281.2 219 63.9
Lsat_1_v5_gn_2_86220 Lactuca sativa HOM05D004585 ORTHO05D005640 9.0e-74 280.8 218 61.5
HanXRQChr14g0456901 Helianthus annuus HOM05D004585 ORTHO05D005640 1.2e-73 280.4 207 64.3
COL.COLO4_33895 Corchorus olitorius HOM05D004585 ORTHO05D005640 2.0e-73 279.6 178 74.2
Lj3A931T47 Lonicera japonica HOM05D004585 ORTHO05D005640 5.9e-73 278.1 203 68.0
Dinv30656 Davidia involucrata HOM05D004585 ORTHO05D005640 8.5e-72 274.2 220 63.6
RcHm_v2.0_Chr4g0433501 Rosa chinensis HOM05D004585 ORTHO05D005640 1.4e-71 273.5 213 62.4
QL04p041242 Quercus lobata HOM05D004585 ORTHO05D005640 1.9e-71 273.1 218 61.9
SGA_v2.0_scaffold113G31721 Striga asiatica HOM05D004585 ORTHO05D005640 2.5e-71 272.7 221 62.0
Ah.03g136890 Amaranthus hybridus HOM05D004585 ORTHO05D005640 3.2e-71 272.3 197 65.5
Atru.chr10.1244 Acer truncatum HOM05D004585 ORTHO05D005640 4.2e-71 271.9 197 68.0
SGA_v2.0_scaffold10G05319 Striga asiatica HOM05D004585 ORTHO05D005640 4.2e-71 271.9 215 64.7
Sc09g0005570 Simmondsia chinensis HOM05D004585 ORTHO05D005640 7.2e-71 271.2 207 62.3
Ah.16g102420 Amaranthus hybridus HOM05D004585 ORTHO05D005640 1.2e-70 270.4 197 65.5
Solyc06g074720.4 Solanum lycopersicum HOM05D004585 ORTHO05D005640 1.2e-70 270.4 205 65.9
MD08G1243300 Malus domestica HOM05D004585 ORTHO05D005640 2.1e-70 269.6 215 61.4
Hund06922 Selenicereus undatus HOM05D004585 ORTHO05D005640 4.6e-70 268.5 205 63.4
Nitab4.5_0003470g0110 Nicotiana tabacum HOM05D004585 ORTHO05D005640 6.1e-70 268.1 204 64.7
Hund13887 Selenicereus undatus HOM05D004585 ORTHO05D005640 7.9e-70 267.7 203 62.1
SGA_v2.0_scaffold154G37190 Striga asiatica HOM05D004585 ORTHO05D005640 1.0e-69 267.3 214 61.7
Migut.F01706 Erythranthe guttata HOM05D004585 ORTHO05D005640 1.8e-69 266.5 222 63.5
MSTRG.412 Avicennia marina HOM05D004585 ORTHO05D005640 3.9e-69 265.4 215 61.4
EL10Ac2g03709 Beta vulgaris HOM05D004585 ORTHO05D005640 3.3e-68 262.3 211 61.1
PSO210G0756 Papaver somniferum HOM05D004585 ORTHO05D005640 7.4e-68 261.2 205 62.4
SalBow6G2458 Salvia bowleyana HOM05D004585 ORTHO05D005640 9.7e-68 260.8 253 55.3
CDE04G0123 Ceratophyllum demersum HOM05D004585 ORTHO05D005640 8.2e-67 257.7 220 57.3
FvH4_5g27351 Fragaria vesca HOM05D004585 ORTHO05D005640 1.4e-66 256.9 221 57.5
FAN26G1691 Fragaria x ananassa HOM05D004585 ORTHO05D005640 1.4e-66 256.9 225 57.3
ATR0068G115 Amborella trichopoda HOM05D004585 ORTHO05D005640 9.0e-66 254.2 214 57.0
Haze_22178 Corylus avellana HOM05D004585 ORTHO05D005640 2.0e-65 253.1 223 60.5
CDE02G2408 Ceratophyllum demersum HOM05D000251 ORTHO05D002506 5.9e-65 251.5 220 56.8
AUR62003699 Chenopodium quinoa HOM05D004585 ORTHO05D005640 1.3e-64 250.4 188 62.2
Os08g0412200 Oryza sativa ssp. japonica HOM05D004585 ORTHO05D005640 1.7e-64 250.0 215 57.2
EL10Ac4g08678 Beta vulgaris HOM05D004585 ORTHO05D005640 2.7e-62 242.7 183 64.5
HPP92_008213 Vanilla planifolia HOM05D004585 ORTHO05D005640 4.6e-62 241.9 219 53.9
EL10Ac4g08675 Beta vulgaris HOM05D004585 ORTHO05D005640 1.4e-61 240.4 187 63.1
FAN13G1680 Fragaria x ananassa HOM05D005925 ORTHO05D007270 1.8e-61 240.0 254 50.0
FAN18G1621 Fragaria x ananassa HOM05D005925 ORTHO05D007270 1.8e-61 240.0 254 50.0
CSS0012030 Camellia sinensis var. sinensis HOM05D004585 ORTHO05D005640 2.3e-61 239.6 234 56.8
BolC2t06157H Brassica oleracea HOM05D004585 ORTHO05D005640 4.8e-59 231.9 158 69.0
Medtr4g127330 Medicago truncatula HOM05D004585 ORTHO05D005640 2.4e-58 229.6 186 62.9
Ciclev10033004m.g Citrus clementina HOM05D004585 ORTHO05D005640 7.7e-57 224.6 145 70.3
COL.COLO4_27310 Corchorus olitorius HOM05D004585 ORTHO05D005640 1.0e-56 224.2 146 70.5
Zm00001eb178930 Zea mays HOM05D004585 ORTHO05D005640 4.4e-52 208.8 189 56.6
DCAR_012470 Daucus carota HOM05D004585 ORTHO05D005640 2.8e-51 206.1 145 64.1
Pp3c3_32540 Physcomitrium patens HOM05D004585 ORTHO05D005640 7.2e-47 191.4 216 45.8
Pp3c8_3240 Physcomitrium patens HOM05D004585 ORTHO05D005640 5.7e-44 181.8 219 42.5
TPR.G31410 Trifolium pratense HOM05D004585 ORTHO05D005640 5.7e-44 181.8 143 66.4
Oeu046197.1 Olea europaea HOM05D004585 ORTHO05D005640 7.5e-44 181.4 142 57.0
Lj9A82T44 Lonicera japonica HOM05D004585 ORTHO05D005640 6.3e-43 178.3 154 60.4
DCAR_001331 Daucus carota HOM05D004585 ORTHO05D005640 9.1e-42 174.5 145 57.2
Mapoly0059s0023 Marchantia polymorpha HOM05D004585 ORTHO05D005640 1.5e-39 167.2 164 47.6
AUR62018007 Chenopodium quinoa HOM05D004585 ORTHO05D005640 3.6e-38 162.5 125 61.6
Lj6g0027575 Lotus japonicus HOM05D004585 ORTHO05D005640 4.7e-38 162.2 128 64.1
Aqoxy1G00240 Aquilegia oxysepala HOM05D004585 ORTHO05D005640 1.1e-34 151.0 106 66.0
AagrBONN_evm.TU.Sc2ySwM_228.827 Anthoceros agrestis HOM05D004585 ORTHO05D005640 1.4e-34 150.6 142 50.0
SMO117G0347 Selaginella moellendorffii HOM05D004585 ORTHO05D005640 4.1e-34 149.1 196 39.8
MCO05G308 Micromonas commoda HOM05D004585 ORTHO05D005640 1.0e-32 144.4 148 43.9
BcaC06g32170 Brassica carinata HOM05D004585 ORTHO05D005640 1.2e-30 137.5 77 81.8
CBR_g11154 Chara braunii HOM05D004585 ORTHO05D005640 2.1e-30 136.7 233 37.8
PRCOL_00003387 Prasinoderma coloniale HOM05D004585 ORTHO05D005640 2.1e-30 136.7 144 43.8
Cre08.g368500 Chlamydomonas reinhardtii HOM05D004585 ORTHO05D005640 8.0e-30 134.8 162 40.7
unitig_26.g9455 Utricularia gibba HOM05D004585 ORTHO05D005640 3.0e-29 132.9 222 41.0
Cfa021710 Carpinus fangiana HOM05D004585 ORTHO05D005640 1.3e-27 127.5 184 37.0
TPR.G32073 Trifolium pratense HOM05D004585 ORTHO05D005640 2.1e-22 110.2 75 65.3
Oeu060262.1 Olea europaea HOM05D004585 ORTHO05D005640 7.5e-20 101.7 95 58.9
Haze_26093 Corylus avellana HOM05D004585 ORTHO05D005640 2.9e-19 99.8 145 37.2
MD15G1436900 Malus domestica HOM05D004585 ORTHO05D005640 1.6e-17 94.0 71 60.6
BcaB01g05909 Brassica carinata HOM05D004585 ORTHO05D005640 1.7e-16 90.5 55 72.7
COL.COLO4_14104 Corchorus olitorius HOM05D004585 ORTHO05D005736 3.1e-13 79.7 65 58.5
Oeu053518.1 Olea europaea HOM05D004585 ORTHO05D005640 3.4e-12 76.3 49 67.3
COL.COLO4_17533 Corchorus olitorius HOM05D001240 ORTHO05D002450 5.8e-12 75.5 49 65.3
MD15G1437100 Malus domestica HOM05D004585 ORTHO05D005640 9.8e-12 74.7 73 56.2
SalBow3G2087 Salvia bowleyana HOM05D004585 ORTHO05D005640 4.9e-11 72.4 44 75.0
Glyma.09G232800 Glycine max HOM05D004585 ORTHO05D005640 6.4e-11 72.0 75 53.3
MD15G1437000 Malus domestica HOM05D004585 ORTHO05D005640 1.9e-10 70.5 49 61.2
EL10Ac7g17659 Beta vulgaris HOM05D004585 ORTHO05D005640 2.7e-09 66.6 69 44.9
Cre06.g288750 Chlamydomonas reinhardtii HOM05D006251 ORTHO05D007695 8.6e-08 61.6 129 30.2
MBI10_g26097_MAGBIO Magnolia biondii HOM05D000142 ORTHO05D001253 2.5e-07 60.1 90 32.2
DCAR_009360 Daucus carota HOM05D003145 ORTHO05D003586 3.3e-07 59.7 90 33.3
CANSAT21G2006 Cannabis sativa HOM05D000285 ORTHO05D000241 1.6e-06 57.4 58 43.1
CANSAT21G0794 Cannabis sativa HOM05D000285 ORTHO05D000241 2.8e-06 56.6 58 43.1
CANSAT21G1045 Cannabis sativa HOM05D000285 ORTHO05D000241 2.8e-06 56.6 58 43.1
Lalb_Chr21g0314911 Lupinus albus HOM05D000142 ORTHO05D001253 2.8e-06 56.6 77 33.8
EL10Ac4g07530 Beta vulgaris HOM05D000285 ORTHO05D000241 3.6e-06 56.2 63 41.3
Nitab4.5_0004242g0030 Nicotiana tabacum HOM05D003938 ORTHO05D004759 3.6e-06 56.2 81 39.5
FvH4_6g51431 Fragaria vesca HOM05D000285 ORTHO05D000241 4.7e-06 55.8 63 41.3
FAN14G4225 Fragaria x ananassa HOM05D004963 ORTHO05D006638 4.7e-06 55.8 63 41.3
RcHm_v2.0_Chr2g0173111 Rosa chinensis HOM05D000285 ORTHO05D000241 4.7e-06 55.8 63 41.3
CANSAT21G0705 Cannabis sativa HOM05D000285 ORTHO05D000241 6.2e-06 55.5 58 41.4
CBR_g28640 Chara braunii HOM05D006251 ORTHO05D007695 6.2e-06 55.5 86 31.4
CANSAT21G0598 Cannabis sativa HOM05D000285 ORTHO05D000241 8.1e-06 55.1 58 41.4
Migut.D02468 Erythranthe guttata HOM05D005326 ORTHO05D006734 8.1e-06 55.1 72 33.3
TWI53G1090 Tripterygium wilfordii HOM05D000142 ORTHO05D001253 8.1e-06 55.1 89 28.1


User provided reference genes

Program Settings