Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G2350 Aethionema arabicum HOM05D004187 ORTHO05D004890 1.4e-87 326.2 159 100.0
Carub.0003s2284 Capsella rubella HOM05D004187 ORTHO05D004890 8.8e-63 243.8 148 77.0
AT3G22680 Arabidopsis thaliana HOM05D004187 ORTHO05D004890 1.2e-62 243.4 148 78.4
AL3G36980 Arabidopsis lyrata HOM05D004187 ORTHO05D004890 2.6e-62 242.3 155 76.1
CARHR098560 Cardamine hirsuta HOM05D004187 ORTHO05D004890 2.8e-56 222.2 149 71.8
BcaC01g03429 Brassica carinata HOM05D004187 ORTHO05D004890 1.0e-55 220.3 160 68.8
BcaC01g03430 Brassica carinata HOM05D004187 ORTHO05D004890 1.0e-55 220.3 160 68.8
C03p52670 Brassica napus HOM05D004187 ORTHO05D004890 1.0e-55 220.3 160 68.8
BolC3t17535H Brassica oleracea HOM05D004187 ORTHO05D004890 1.0e-55 220.3 160 68.8
A03p42920 Brassica napus HOM05D004187 ORTHO05D004890 5.2e-55 218.0 160 68.8
BraA03t13436Z Brassica rapa HOM05D004187 ORTHO05D004890 5.2e-55 218.0 160 68.8
Sp3g20440 Schrenkiella parvula HOM05D004187 ORTHO05D004890 5.2e-55 218.0 154 70.1
Thhalv10021679m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 5.7e-54 214.5 148 69.6
THA.LOC104803042 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 1.2e-51 206.8 160 64.4
BcaB06g26379 Brassica carinata HOM05D004187 ORTHO05D004890 3.5e-51 205.3 153 66.0
BcaC05g28028 Brassica carinata HOM05D004187 ORTHO05D004890 5.6e-49 198.0 156 63.5
C05p40440 Brassica napus HOM05D004187 ORTHO05D004890 5.6e-49 198.0 156 63.5
BolC5t32785H Brassica oleracea HOM05D004187 ORTHO05D004890 5.6e-49 198.0 156 63.5
A05p26020 Brassica napus HOM05D004187 ORTHO05D004890 2.1e-48 196.1 157 63.7
BraA05t21487Z Brassica rapa HOM05D004187 ORTHO05D004890 4.7e-48 194.9 158 63.9
THA.LOC104808564 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 4.7e-48 194.9 130 70.8
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 4.0e-47 191.8 133 66.2
VMungo0251G0090 Vigna mungo HOM05D004187 ORTHO05D004890 2.2e-45 186.0 124 69.4
Medtr5g006610 Medicago truncatula HOM05D004187 ORTHO05D004890 3.7e-45 185.3 136 64.7
Cfa008463 Carpinus fangiana HOM05D004187 ORTHO05D004890 4.9e-45 184.9 136 65.4
Thhalv10017318m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 8.3e-45 184.1 166 58.4
Haze_11210 Corylus avellana HOM05D004187 ORTHO05D004890 1.1e-44 183.7 136 64.7
Phvul.002G043400 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 1.9e-44 183.0 124 68.5
QL06p001566 Quercus lobata HOM05D004187 ORTHO05D004890 1.9e-44 183.0 167 50.9
Potri.008G155800 Populus trichocarpa HOM05D004187 ORTHO05D004890 2.4e-44 182.6 164 54.3
Sabra08G0118600 Salix brachista HOM05D004187 ORTHO05D004890 3.2e-44 182.2 164 54.3
Gohir.A10G118400 Gossypium hirsutum HOM05D004187 ORTHO05D004890 4.1e-44 181.8 152 55.9
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 4.1e-44 181.8 131 63.4
CiPaw.02G122700 Carya illinoinensis HOM05D004187 ORTHO05D004890 9.2e-44 180.6 136 64.0
Eucgr.H03428 Eucalyptus grandis HOM05D004187 ORTHO05D004890 1.2e-43 180.3 164 53.7
Glyma.01G235900 Glycine max HOM05D004187 ORTHO05D004890 1.2e-43 180.3 129 63.6
Ca_24413_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.6e-43 179.9 124 67.7
Gorai.011G165600 Gossypium raimondii HOM05D004187 ORTHO05D004890 1.6e-43 179.9 131 61.8
Prupe.1G018500 Prunus persica HOM05D004187 ORTHO05D004890 2.7e-43 179.1 147 57.8
Lalb_Chr05g0211101 Lupinus albus HOM05D004187 ORTHO05D004890 3.5e-43 178.7 128 64.1
Gohir.D10G148300 Gossypium hirsutum HOM05D004187 ORTHO05D004890 6.0e-43 177.9 152 55.9
Atru.chr4.2417 Acer truncatum HOM05D004187 ORTHO05D004890 7.8e-43 177.6 163 54.6
Nn1g02390 Nelumbo nucifera HOM05D004187 ORTHO05D004890 1.0e-42 177.2 160 55.6
Nitab4.5_0000050g0260 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.0e-42 177.2 160 53.1
Rhsim02G0027200 Rhododendron simsii HOM05D004187 ORTHO05D004890 1.3e-42 176.8 152 54.6
Rhsim04G0199500 Rhododendron simsii HOM05D004187 ORTHO05D004890 1.3e-42 176.8 161 55.3
RcHm_v2.0_Chr4g0407591 Rosa chinensis HOM05D004187 ORTHO05D004890 1.3e-42 176.8 155 54.2
Dinv25939 Davidia involucrata HOM05D004187 ORTHO05D004890 1.7e-42 176.4 131 59.5
CANSAT78G1519 Cannabis sativa HOM05D004187 ORTHO05D004890 2.3e-42 176.0 156 53.2
MD16G1197500 Malus domestica HOM05D004187 ORTHO05D004890 2.3e-42 176.0 147 57.1
Sed0024336 Sechium edule HOM05D004187 ORTHO05D004890 2.3e-42 176.0 158 57.0
ClCG05G004990 Citrullus lanatus HOM05D004187 ORTHO05D004890 3.0e-42 175.6 131 63.4
Manes.15G031200 Manihot esculenta HOM05D004187 ORTHO05D004890 3.0e-42 175.6 164 54.3
TAR362G0393 Trochodendron aralioides HOM05D004187 ORTHO05D004890 3.0e-42 175.6 164 55.5
Ca_24412_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 5.0e-42 174.9 136 61.8
Ca_30960_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 5.0e-42 174.9 136 61.8
Thhalv10029384m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 5.0e-42 174.9 125 68.8
Aqoxy2G03437 Aquilegia oxysepala HOM05D004187 ORTHO05D004890 6.6e-42 174.5 131 63.4
FAN18G3642 Fragaria x ananassa HOM05D004187 ORTHO05D004890 6.6e-42 174.5 155 54.8
Medtr5g006600 Medicago truncatula HOM05D004187 ORTHO05D004890 6.6e-42 174.5 137 58.4
arahy.Tifrunner.gnm1.ann1.Q4QH0F Arachis hypogaea HOM05D004187 ORTHO05D004890 8.6e-42 174.1 136 61.0
Sed0012407 Sechium edule HOM05D004187 ORTHO05D004890 8.6e-42 174.1 131 63.4
LjContig00408g0013113 Lotus japonicus HOM05D004187 ORTHO05D004890 1.1e-41 173.7 155 57.4
TPR.G37866 Trifolium pratense HOM05D004187 ORTHO05D004890 1.1e-41 173.7 136 60.3
Actinidia40129 Actinidia chinensis HOM05D004187 ORTHO05D004890 1.5e-41 173.3 130 58.5
TWI73G1209 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 1.5e-41 173.3 158 57.6
MELO3C006513.2 Cucumis melo HOM05D004187 ORTHO05D004890 1.9e-41 172.9 131 62.6
CsaV3_3G013040 Cucumis sativus L. HOM05D004187 ORTHO05D004890 1.9e-41 172.9 131 62.6
FAN13G2545 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.9e-41 172.9 155 54.2
Glyma.11G007300 Glycine max HOM05D004187 ORTHO05D004890 1.9e-41 172.9 116 68.1
Atru.chr4.2392 Acer truncatum HOM05D004187 ORTHO05D004890 2.5e-41 172.6 163 53.4
Duzib212G0360 Durio zibethinus HOM05D004187 ORTHO05D004890 2.5e-41 172.6 131 60.3
FvH4_5g32450 Fragaria vesca HOM05D004187 ORTHO05D004890 2.5e-41 172.6 155 54.2
FvH4_4g00760 Fragaria vesca HOM05D004187 ORTHO05D004890 3.3e-41 172.2 155 52.9
FAN12G2319 Fragaria x ananassa HOM05D004187 ORTHO05D004890 3.3e-41 172.2 155 52.9
Psat2g190440 Pisum sativum HOM05D004187 ORTHO05D004890 4.3e-41 171.8 154 55.8
arahy.Tifrunner.gnm1.ann1.8FXP11 Arachis hypogaea HOM05D004187 ORTHO05D004890 5.6e-41 171.4 136 59.6
vmacro15360 Vaccinium macrocarpon HOM05D004187 ORTHO05D004890 5.6e-41 171.4 128 60.2
Ciclev10005993m.g Citrus clementina HOM05D004187 ORTHO05D004890 7.3e-41 171.0 126 61.1
arahy.Tifrunner.gnm1.ann1.LSRC2Y Arachis hypogaea HOM05D004187 ORTHO05D004890 9.5e-41 170.6 136 60.3
arahy.Tifrunner.gnm1.ann1.Q6C7EF Arachis hypogaea HOM05D004187 ORTHO05D004890 9.5e-41 170.6 134 60.4
CSS0034976 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 1.6e-40 169.9 150 54.0
Lj3A731T58 Lonicera japonica HOM05D004187 ORTHO05D004890 1.6e-40 169.9 149 56.4
FAN22G0369 Fragaria x ananassa HOM05D004187 ORTHO05D004890 2.8e-40 169.1 155 52.9
TPR.G37887 Trifolium pratense HOM05D004187 ORTHO05D004890 2.8e-40 169.1 129 60.5
Sc19g0004030 Simmondsia chinensis HOM05D004187 ORTHO05D004890 3.6e-40 168.7 126 61.1
Hma1.2p1_0207F.1_g088010 Hydrangea macrophylla HOM05D004187 ORTHO05D004890 6.2e-40 167.9 131 59.5
CSS0045006 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 8.1e-40 167.5 128 59.4
Nitab4.5_0001792g0010 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.1e-39 167.2 116 65.5
TAR633G0827 Trochodendron aralioides HOM05D004187 ORTHO05D004890 1.1e-39 167.2 129 62.8
MSTRG.4047 Avicennia marina HOM05D004187 ORTHO05D004890 1.4e-39 166.8 155 51.6
GSVIVG01018017001 Vitis vinifera HOM05D004187 ORTHO05D004890 1.4e-39 166.8 126 61.1
AUR62001090 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.8e-39 166.4 144 56.2
Migut.G00365 Erythranthe guttata HOM05D004187 ORTHO05D004890 1.8e-39 166.4 136 58.8
SalBow2G2347 Salvia bowleyana HOM05D004187 ORTHO05D004890 1.8e-39 166.4 151 56.3
COL.COLO4_21526 Corchorus olitorius HOM05D004187 ORTHO05D004890 2.3e-39 166.0 115 66.1
TWI53G1349 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 2.3e-39 166.0 167 52.1
PGSC0003DMG401028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 3.1e-39 165.6 125 63.2
Psat2g190480 Pisum sativum HOM05D004187 ORTHO05D004890 5.2e-39 164.9 137 55.5
ECA233G0410 Erigeron canadensis HOM05D004187 ORTHO05D004890 1.2e-38 163.7 134 57.5
ECA247G1582 Erigeron canadensis HOM05D004187 ORTHO05D004890 3.4e-38 162.2 129 58.1
SalBow2G0844 Salvia bowleyana HOM05D004187 ORTHO05D004890 3.4e-38 162.2 151 55.6
Sopen10g014270 Solanum pennellii HOM05D004187 ORTHO05D004890 3.4e-38 162.2 172 50.6
PGR129G0008 Punica granatum HOM05D004187 ORTHO05D004890 4.4e-38 161.8 130 56.9
PGR142G1722 Punica granatum HOM05D004187 ORTHO05D004890 4.4e-38 161.8 130 56.9
HanXRQChr08g0219391 Helianthus annuus HOM05D004187 ORTHO05D004890 5.8e-38 161.4 131 57.3
FAN08G0419 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.3e-37 160.2 121 60.3
ECA247G0434 Erigeron canadensis HOM05D000045 ORTHO05D004890 2.9e-37 159.1 130 57.7
Cc10_g08560 Coffea canephora HOM05D004187 ORTHO05D004890 4.9e-37 158.3 128 57.8
Dinv03045 Davidia involucrata HOM05D004187 ORTHO05D004890 4.9e-37 158.3 125 59.2
Manes.03G175300 Manihot esculenta HOM05D004187 ORTHO05D004890 4.9e-37 158.3 158 53.2
PSO210G5857 Papaver somniferum HOM05D004187 ORTHO05D004890 1.4e-36 156.8 131 52.7
AUR62008916 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.9e-36 156.4 142 54.2
HPP92_009615 Vanilla planifolia HOM05D004187 ORTHO05D004890 1.9e-36 156.4 124 58.1
PSO170G4884 Papaver somniferum HOM05D004187 ORTHO05D004890 2.4e-36 156.0 131 52.7
Lsat_1_v5_gn_8_21341 Lactuca sativa HOM05D004187 ORTHO05D004890 9.2e-36 154.1 131 53.4
PGSC0003DMG402028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.2e-35 153.7 116 63.8
Actinidia32414 Actinidia chinensis HOM05D004187 ORTHO05D004890 1.6e-35 153.3 130 56.2
CDE07G0031 Ceratophyllum demersum HOM05D004187 ORTHO05D004890 3.5e-35 152.1 130 58.5
Rhsim03G0003800 Rhododendron simsii HOM05D004187 ORTHO05D004890 3.5e-35 152.1 124 56.5
Solyc10g045190.3 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.0e-34 150.6 116 62.9
ATR0665G390 Amborella trichopoda HOM05D004187 ORTHO05D004890 1.7e-34 149.8 126 54.8
Nitab4.5_0001547g0030 Nicotiana tabacum HOM05D004187 ORTHO05D004890 6.6e-34 147.9 135 50.4
PGSC0003DMG400039476 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.9e-33 146.4 116 57.8
DCAR_031726 Daucus carota HOM05D004187 ORTHO05D004890 2.5e-33 146.0 155 46.5
Nitab4.5_0000085g0360 Nicotiana tabacum HOM05D004187 ORTHO05D004890 2.5e-33 146.0 129 51.2
SGA_v2.0_scaffold191G40487 Striga asiatica HOM05D004187 ORTHO05D004890 4.3e-33 145.2 135 51.1
CAN.G1402.3 Capsicum annuum HOM05D004187 ORTHO05D004890 1.2e-32 143.7 129 50.4
Peaxi162Scf00092g00016 Petunia axillaris HOM05D004187 ORTHO05D004890 6.2e-32 141.4 122 52.5
Peaxi162Scf00245g00106 Petunia axillaris HOM05D004187 ORTHO05D004890 8.1e-32 141.0 125 51.2
Solyc09g082480.2 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.1e-31 140.6 130 50.8
unitig_22.g6822 Utricularia gibba HOM05D004187 ORTHO05D004890 5.2e-31 138.3 134 49.3
Sopen09g031340 Solanum pennellii HOM05D004187 ORTHO05D004890 1.2e-30 137.1 130 50.8
QL08p059729 Quercus lobata HOM05D004187 ORTHO05D004890 2.2e-29 132.9 124 49.2
PGSC0003DMG400040737 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.9e-29 132.5 111 55.9
Cfa001472 Carpinus fangiana HOM05D004187 ORTHO05D004890 3.7e-29 132.1 127 53.5
Prupe.2G235500 Prunus persica HOM05D004187 ORTHO05D004890 3.7e-29 132.1 129 51.9
Haze_17068 Corylus avellana HOM05D004187 ORTHO05D004890 1.6e-27 126.7 129 51.2
RcHm_v2.0_Chr1g0367131 Rosa chinensis HOM05D004187 ORTHO05D004890 4.6e-27 125.2 133 51.9
Potri.008G076500 Populus trichocarpa HOM05D004187 ORTHO05D004890 6.0e-27 124.8 136 48.5
Sopen09g031300 Solanum pennellii HOM05D004187 ORTHO05D004890 6.0e-27 124.8 116 49.1
AUR62001087 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.7e-26 123.2 95 58.9
Atru.chr1.2916 Acer truncatum HOM05D004187 ORTHO05D004890 1.9e-25 119.8 118 50.8
PGSC0003DMG400039782 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.5e-25 119.4 105 53.3
Duzib114G0324 Durio zibethinus HOM05D004187 ORTHO05D004890 4.3e-25 118.6 112 51.8
Atru.chr7.913 Acer truncatum HOM05D004187 ORTHO05D004890 7.3e-25 117.9 113 51.3
Atru.chr1.2920 Acer truncatum HOM05D004187 ORTHO05D004890 4.7e-24 115.2 127 45.7
COL.COLO4_15044 Corchorus olitorius HOM05D004187 ORTHO05D004890 8.1e-24 114.4 123 43.9
Sopen09g031290 Solanum pennellii HOM05D004187 ORTHO05D004890 2.0e-22 109.8 105 49.5
Lalb_Chr10g0091621 Lupinus albus HOM05D004187 ORTHO05D004890 3.8e-21 105.5 122 44.3
Manes.12G002301 Manihot esculenta HOM05D004187 ORTHO05D004890 1.4e-20 103.6 111 48.6
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 1.9e-20 103.2 123 45.5
Lj1g0019332 Lotus japonicus HOM05D004187 ORTHO05D004890 9.3e-20 100.9 155 38.1
VMungo1383G1788 Vigna mungo HOM05D004187 ORTHO05D004890 9.3e-20 100.9 122 41.8
Nn6g35138 Nelumbo nucifera HOM05D004187 ORTHO05D004890 2.1e-19 99.8 112 48.2
Lj1g0009372 Lotus japonicus HOM05D004187 ORTHO05D004890 2.7e-19 99.4 155 38.1
PGSC0003DMG400032269 Solanum tuberosum HOM05D004187 ORTHO05D004890 6.0e-19 98.2 86 53.5
Solyc09g082420.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 7.8e-19 97.8 91 50.5
Ca_12246_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.7e-18 96.7 109 46.8
Solyc09g082430.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 3.0e-18 95.9 98 49.0
Lj1g0011366 Lotus japonicus HOM05D004187 ORTHO05D004890 6.6e-18 94.7 133 40.6
Phvul.008G010500 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 6.6e-18 94.7 122 39.3
PGSC0003DMG400013771 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.8e-16 89.4 79 51.9
Lalb_Chr16g0376451 Lupinus albus HOM05D004187 ORTHO05D004890 3.6e-16 89.0 65 63.1
Thecc.10G042200 Theobroma cacao HOM05D009017 ORTHO05D010462 2.4e-15 86.3 128 36.7
Solyc09g082440.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 3.8e-13 79.0 75 49.3
Gohir.A10G219300 Gossypium hirsutum HOM05D009017 ORTHO05D010462 6.4e-13 78.2 99 43.4
PGSC0003DMG400032265 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.6e-11 73.6 70 48.6
Sabra10G0059200 Salix brachista HOM05D004187 ORTHO05D004890 3.0e-10 69.3 123 37.4
BcaB03g14654 Brassica carinata HOM05D004187 ORTHO05D004890 3.3e-09 65.9 74 51.4
Zm00001eb275620 Zea mays HOM05D004187 ORTHO05D004890 9.6e-09 64.3 58 51.7


User provided reference genes

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