Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G1660 Aethionema arabicum HOM05D005815 ORTHO05D007023 1.2e-186 656.4 325 100.0
AL3G20230 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 7.2e-152 540.8 326 80.1
AT3G09150 Arabidopsis thaliana HOM05D005815 ORTHO05D007023 7.2e-152 540.8 326 80.1
Carub.0003s0829 Capsella rubella HOM05D005815 ORTHO05D007023 1.0e-150 537.0 326 79.1
CARHR083510 Cardamine hirsuta HOM05D005815 ORTHO05D007023 1.3e-150 536.6 326 78.8
BolC5t34532H Brassica oleracea HOM05D005815 ORTHO05D007023 1.1e-147 526.9 326 77.3
BcaB04g18547 Brassica carinata HOM05D005815 ORTHO05D007023 1.8e-147 526.2 325 77.8
Sp3g07570 Schrenkiella parvula HOM05D005815 ORTHO05D007023 2.4e-147 525.8 326 77.3
Thhalv10011657m.g Eutrema salsugineum HOM05D005815 ORTHO05D007023 3.1e-147 525.4 326 77.6
BcaC05g29644 Brassica carinata HOM05D005815 ORTHO05D007023 9.0e-147 523.9 326 77.3
A03p36140 Brassica napus HOM05D005815 ORTHO05D007023 1.3e-145 520.0 326 78.2
C05p58790 Brassica napus HOM05D005815 ORTHO05D007023 1.3e-145 520.0 326 76.7
C03p43800 Brassica napus HOM05D005815 ORTHO05D007023 1.9e-144 516.2 326 77.6
BcaC01g04214 Brassica carinata HOM05D005815 ORTHO05D007023 3.2e-144 515.4 326 77.3
BraA05t22757Z Brassica rapa HOM05D005815 ORTHO05D007023 7.2e-144 514.2 327 76.8
THA.LOC104799118 Tarenaya hassleriana HOM05D005815 ORTHO05D007023 4.8e-140 501.5 327 74.0
BraA03t12785Z Brassica rapa HOM05D005815 ORTHO05D007023 5.1e-134 481.5 305 78.4
BolC3t16647H Brassica oleracea HOM05D001932 ORTHO05D007023 1.4e-131 473.4 298 77.5
A05p39740 Brassica napus HOM05D005815 ORTHO05D007023 1.9e-128 463.0 327 70.9
Gohir.A13G217700 Gossypium hirsutum HOM05D005815 ORTHO05D007023 3.0e-118 429.1 300 66.0
Gorai.013G252400 Gossypium raimondii HOM05D005815 ORTHO05D007023 1.2e-117 427.2 300 66.0
Gohir.D13G221350 Gossypium hirsutum HOM05D005815 ORTHO05D007023 5.7e-117 424.9 300 65.3
Thecc.09G243800 Theobroma cacao HOM05D005815 ORTHO05D007023 1.7e-116 423.3 311 63.3
Manes.02G142200 Manihot esculenta HOM05D005815 ORTHO05D007023 5.0e-113 411.8 323 59.4
Ciclev10015899m.g Citrus clementina HOM05D005815 ORTHO05D007023 8.5e-113 411.0 323 61.0
Prupe.4G258500 Prunus persica HOM05D005815 ORTHO05D007023 1.5e-112 410.2 323 60.1
TWI79G0828 Tripterygium wilfordii HOM05D005815 ORTHO05D007023 1.2e-111 407.1 309 61.5
Dinv36194 Davidia involucrata HOM05D005815 ORTHO05D007023 1.6e-111 406.8 321 60.4
CiPaw.13G152800 Carya illinoinensis HOM05D005815 ORTHO05D007023 2.7e-111 406.0 326 58.0
RcHm_v2.0_Chr5g0050821 Rosa chinensis HOM05D005815 ORTHO05D007023 3.6e-111 405.6 296 64.2
Potri.009G048000 Populus trichocarpa HOM05D005815 ORTHO05D007023 4.0e-110 402.1 316 61.1
FvH4_3g28130 Fragaria vesca HOM05D005815 ORTHO05D007023 5.2e-110 401.7 303 62.7
Sabra16G0154400 Salix brachista HOM05D005815 ORTHO05D007023 8.8e-110 401.0 329 57.8
Atru.chr3.3156 Acer truncatum HOM05D005815 ORTHO05D007023 1.2e-109 400.6 322 59.6
FAN11G0714 Fragaria x ananassa HOM05D005815 ORTHO05D007023 2.0e-109 399.8 303 62.4
Sed0013061 Sechium edule HOM05D005815 ORTHO05D007023 2.6e-109 399.4 305 62.3
Potri.001G253700 Populus trichocarpa HOM05D005815 ORTHO05D007023 5.7e-109 398.3 291 62.5
Atru.chr3.2823 Acer truncatum HOM05D005815 ORTHO05D007023 9.8e-109 397.5 322 59.0
TAR369G0618 Trochodendron aralioides HOM05D005815 ORTHO05D007023 1.4e-107 393.7 321 61.1
GSVIVG01037233001 Vitis vinifera HOM05D005815 ORTHO05D007023 9.2e-107 391.0 288 62.8
CSS0034758 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 2.7e-106 389.4 328 57.0
CsaV3_1G043160 Cucumis sativus L. HOM05D005815 ORTHO05D007023 1.7e-105 386.7 305 59.7
CSS0042266 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 3.8e-105 385.6 328 56.4
Solyc01g008930.4 Solanum lycopersicum HOM05D005815 ORTHO05D007023 5.0e-105 385.2 284 62.3
CAN.G379.23 Capsicum annuum HOM05D005815 ORTHO05D007023 1.5e-104 383.6 284 62.3
Peaxi162Scf00050g01211 Petunia axillaris HOM05D005815 ORTHO05D007023 1.9e-104 383.3 284 62.3
PGSC0003DMG401022694 Solanum tuberosum HOM05D005815 ORTHO05D007023 1.6e-103 380.2 284 61.6
Actinidia16359 Actinidia chinensis HOM05D005815 ORTHO05D007023 2.1e-103 379.8 294 59.2
Nitab4.5_0000718g0060 Nicotiana tabacum HOM05D005815 ORTHO05D007023 3.6e-103 379.0 294 60.9
CANSAT54G2776 Cannabis sativa HOM05D005815 ORTHO05D007023 6.1e-103 378.3 321 55.8
LjContig00081g0007858 Lotus japonicus HOM05D005815 ORTHO05D007023 6.1e-103 378.3 321 57.6
Aqoxy2G00303 Aquilegia oxysepala HOM05D005815 ORTHO05D007023 1.0e-102 377.5 287 60.3
Migut.N02363 Erythranthe guttata HOM05D005815 ORTHO05D007023 1.0e-102 377.5 284 62.0
Glyma.02G304700 Glycine max HOM05D005815 ORTHO05D007023 1.4e-102 377.1 320 58.1
Cpa.g.sc84.16 Carica papaya HOM05D005815 ORTHO05D007023 4.0e-102 375.6 250 69.6
Cc01_g05830 Coffea canephora HOM05D005815 ORTHO05D007023 5.2e-102 375.2 311 56.9
Lalb_Chr04g0247351 Lupinus albus HOM05D005815 ORTHO05D007023 5.2e-102 375.2 335 57.0
Lalb_Chr04g0247551 Lupinus albus HOM05D005815 ORTHO05D007023 5.2e-102 375.2 335 57.0
PSO384G1390 Papaver somniferum HOM05D005815 ORTHO05D007023 6.8e-102 374.8 285 61.4
arahy.Tifrunner.gnm1.ann1.VEUG4Z Arachis hypogaea HOM05D005815 ORTHO05D007023 8.9e-102 374.4 316 58.5
arahy.Tifrunner.gnm1.ann1.CPT0CW Arachis hypogaea HOM05D005815 ORTHO05D007023 3.4e-101 372.5 315 58.4
Medtr5g097080 Medicago truncatula HOM05D005815 ORTHO05D007023 4.4e-101 372.1 283 63.3
PSO339G6039 Papaver somniferum HOM05D005815 ORTHO05D007023 5.7e-101 371.7 300 58.7
MSTRG.17626 Avicennia marina HOM05D005815 ORTHO05D007023 2.2e-100 369.8 317 56.2
HanXRQChr03g0090721 Helianthus annuus HOM05D005815 ORTHO05D007023 2.2e-100 369.8 310 57.7
COL.COLO4_07231 Corchorus olitorius HOM05D005815 ORTHO05D007023 3.7e-100 369.0 250 66.4
Hma1.2p1_2660F.1_g326385 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 3.7e-100 369.0 256 66.4
Lsat_1_v5_gn_3_113801 Lactuca sativa HOM05D005815 ORTHO05D007023 4.9e-100 368.6 319 56.7
TPR.G1255 Trifolium pratense HOM05D005815 ORTHO05D007023 1.4e-99 367.1 282 61.7
Rhsim13G0216400 Rhododendron simsii HOM05D005815 ORTHO05D007023 1.6e-98 363.6 351 52.4
Eucgr.J00724 Eucalyptus grandis HOM05D005815 ORTHO05D007023 2.0e-98 363.2 294 56.8
Nn2g14945 Nelumbo nucifera HOM05D005815 ORTHO05D007023 5.9e-98 361.7 313 57.8
Sc26g0004090 Simmondsia chinensis HOM05D005815 ORTHO05D007023 1.0e-97 360.9 307 54.7
PGR119G0840 Punica granatum HOM05D005815 ORTHO05D007023 1.7e-97 360.1 329 52.9
DCAR_023769 Daucus carota HOM05D005815 ORTHO05D007023 5.6e-96 355.1 256 63.7
MD03G1169100 Malus domestica HOM05D005815 ORTHO05D007023 1.6e-95 353.6 246 64.6
EL10Ac3g06915 Beta vulgaris HOM05D005815 ORTHO05D007023 2.1e-95 353.2 284 56.3
CDE04G3352 Ceratophyllum demersum HOM05D005815 ORTHO05D007023 6.2e-95 351.7 285 57.5
Phvul.008G284200 Phaseolus vulgaris HOM05D005815 ORTHO05D007023 1.8e-94 350.1 250 63.6
Sopen01g004420 Solanum pennellii HOM05D005815 ORTHO05D007023 6.8e-94 348.2 248 63.7
unitig_21.g20897 Utricularia gibba HOM05D005815 ORTHO05D007023 3.4e-93 345.9 282 55.7
Ca_06446_v3 Cicer arietinum L. HOM05D005815 ORTHO05D007023 5.8e-93 345.1 250 65.2
ATR0721G178 Amborella trichopoda HOM05D005815 ORTHO05D007023 5.4e-91 338.6 257 61.1
Zm00001eb363080 Zea mays HOM05D005815 ORTHO05D007023 7.0e-91 338.2 284 56.3
Lj1A304T23 Lonicera japonica HOM05D005815 ORTHO05D007023 1.7e-89 333.6 228 65.8
SGA_v2.0_scaffold271G46330 Striga asiatica HOM05D005815 ORTHO05D007023 2.3e-86 323.2 302 53.3
FAN16G3704 Fragaria x ananassa HOM05D005815 ORTHO05D007023 5.8e-85 318.5 303 53.8
FAN21G0849 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.7e-84 317.0 303 53.5
Duzib150G1254 Durio zibethinus HOM05D005815 ORTHO05D007023 9.2e-83 311.2 299 52.2
AUR62012030 Chenopodium quinoa HOM05D005815 ORTHO05D007023 2.3e-81 306.6 283 51.9
Glyma.14G009100 Glycine max HOM05D005815 ORTHO05D007023 5.1e-81 305.4 320 50.9
Duzib150G0890 Durio zibethinus HOM05D005815 ORTHO05D007023 1.1e-80 304.3 225 64.0
Psat2g004880 Pisum sativum HOM05D005815 ORTHO05D007023 1.3e-76 290.8 236 60.2
Hma1.2p1_2660F.1_g326395 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 4.6e-74 282.3 188 67.0
Pp3c13_10580 Physcomitrium patens HOM05D005815 ORTHO05D007023 1.1e-72 277.7 278 46.8
ECA240G4129 Erigeron canadensis HOM05D000005 ORTHO05D000012 7.3e-72 275.0 195 62.6
MELO3C029500.2 Cucumis melo HOM05D005815 ORTHO05D007023 1.6e-71 273.9 280 50.7
AUR62040930 Chenopodium quinoa HOM05D005815 ORTHO05D007023 2.1e-71 273.5 283 48.1
AagrBONN_evm.TU.Sc2ySwM_344.3747 Anthoceros agrestis HOM05D005815 ORTHO05D007023 3.6e-71 272.7 279 45.2
Mapoly0015s0102 Marchantia polymorpha HOM05D005815 ORTHO05D007023 1.8e-70 270.4 278 46.4
ClCG03G012900 Citrullus lanatus HOM05D005815 ORTHO05D007023 3.4e-69 266.2 558 31.9
SMO353G0322 Selaginella moellendorffii HOM05D005815 ORTHO05D007023 4.4e-69 265.8 315 43.2
AUR62015366 Chenopodium quinoa HOM05D005815 ORTHO05D007023 8.4e-68 261.5 189 60.8
FAN25G3713 Fragaria x ananassa HOM05D005815 ORTHO05D007023 8.7e-65 251.5 315 45.7
Dinv36196 Davidia involucrata HOM05D005815 ORTHO05D007023 6.2e-63 245.4 157 66.9
QL01p017754 Quercus lobata HOM05D005815 ORTHO05D007023 3.2e-59 233.0 154 64.3
Nitab4.5_0009172g0020 Nicotiana tabacum HOM05D005815 ORTHO05D007023 2.1e-58 230.3 153 66.0
VMungo0647G0340 Vigna mungo HOM05D005815 ORTHO05D007023 6.2e-55 218.8 302 43.4
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 4.5e-53 212.6 148 66.2
Hma1.2p1_1115F.1_g258840 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.4e-51 207.6 175 56.6
Nn2g15997 Nelumbo nucifera HOM05D005815 ORTHO05D007023 7.1e-51 205.3 240 47.5
Nn2g14749 Nelumbo nucifera HOM05D005815 ORTHO05D007023 2.1e-50 203.8 240 47.9
vmacro04007 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 1.7e-44 184.1 166 54.2
CBR_g29537 Chara braunii HOM05D005815 ORTHO05D007023 3.3e-40 169.9 217 37.3
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 3.1e-38 163.3 151 55.0
Hund08152 Selenicereus undatus HOM05D005815 ORTHO05D007023 1.0e-36 158.3 114 60.5
SEGI_10447 Sequoiadendron giganteum HOM05D005815 ORTHO05D007023 3.8e-36 156.4 124 53.2
Nitab4.5_0009172g0010 Nicotiana tabacum HOM05D005815 ORTHO05D007023 4.2e-35 152.9 132 56.8
Eucgr.G00240 Eucalyptus grandis HOM05D005815 ORTHO05D007023 1.6e-34 151.0 200 41.5
Eucgr.G00241 Eucalyptus grandis HOM05D005815 ORTHO05D007023 4.6e-34 149.4 232 38.8
QL01p017749 Quercus lobata HOM05D005815 ORTHO05D007023 1.5e-29 134.4 134 53.0
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 2.6e-29 133.7 102 62.7
arahy.Tifrunner.gnm1.ann1.24D4KD Arachis hypogaea HOM05D005815 ORTHO05D007023 5.0e-28 129.4 100 61.0
Os01g0949400 Oryza sativa ssp. japonica HOM05D005815 ORTHO05D007023 1.1e-27 128.3 128 50.8
HanXRQChr09g0261041 Helianthus annuus HOM05D005815 ORTHO05D007023 4.2e-27 126.3 127 46.5
AL3G20260 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 7.2e-27 125.6 76 75.0
vmacro04006 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 7.2e-27 125.6 74 74.3
Ah.04g152490 Amaranthus hybridus HOM05D005815 ORTHO05D007023 1.2e-26 124.8 287 30.0
Haze_13921 Corylus avellana HOM05D005815 ORTHO05D007023 4.4e-16 89.7 170 35.9
Hma1.2p1_2660F.1_g326390 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.7e-15 87.8 67 64.2
AL1G44350 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 2.2e-12 77.4 119 43.7
Eucgr.G00239 Eucalyptus grandis HOM05D005815 ORTHO05D007023 1.9e-11 74.3 81 46.9
Actinidia24333 Actinidia chinensis HOM05D005815 ORTHO05D007023 9.4e-11 72.0 78 48.7
Glyma.14G136300 Glycine max HOM05D005815 ORTHO05D007023 4.7e-10 69.7 79 50.6


User provided reference genes

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