Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G14030 Aethionema arabicum HOM05D005383 ORTHO05D006722 1.7e-131 473.4 387 100.0
Thhalv10028723m.g Eutrema salsugineum HOM05D005383 ORTHO05D006722 2.6e-100 369.8 390 77.9
Carub.0006s2631 Capsella rubella HOM05D005383 ORTHO05D006722 2.9e-99 366.3 390 77.9
AT4G06634 Arabidopsis thaliana HOM05D005383 ORTHO05D006722 1.5e-95 354.0 391 76.7
AL6G41240 Arabidopsis lyrata HOM05D005383 ORTHO05D006722 2.8e-94 349.7 391 76.0
Sp6g13330 Schrenkiella parvula HOM05D005383 ORTHO05D006722 8.1e-94 348.2 391 75.7
CARHR260070 Cardamine hirsuta HOM05D005383 ORTHO05D006722 3.1e-93 346.3 393 76.8
THA.LOC104801420 Tarenaya hassleriana HOM05D005383 ORTHO05D006722 1.1e-90 337.8 389 74.6
BraSC35t46002Z Brassica rapa HOM05D005383 ORTHO05D006722 9.3e-90 334.7 387 70.3
BcaC04g20728 Brassica carinata HOM05D005383 ORTHO05D006722 4.6e-89 332.4 387 70.0
BolC9t56882H Brassica oleracea HOM05D005383 ORTHO05D006722 4.6e-89 332.4 387 70.0
A10p07980 Brassica napus HOM05D005383 ORTHO05D006722 1.0e-88 331.3 387 69.8
C09p39820 Brassica napus HOM05D005383 ORTHO05D006722 2.0e-84 317.0 372 70.2
Cpa.g.sc161.1 Carica papaya HOM05D005383 ORTHO05D006722 7.6e-84 315.1 380 71.3
A03p16300 Brassica napus HOM05D005383 ORTHO05D006722 3.8e-83 312.8 383 70.2
C03p19190 Brassica napus HOM05D005383 ORTHO05D006722 8.4e-83 311.6 381 68.2
CANSAT54G1323 Cannabis sativa HOM05D005383 ORTHO05D006722 4.6e-81 305.8 390 67.9
COL.COLO4_17761 Corchorus olitorius HOM05D005383 ORTHO05D006722 7.9e-81 305.1 381 57.0
QL02p099934 Quercus lobata HOM05D005383 ORTHO05D006722 7.9e-81 305.1 379 71.0
Sed0026787 Sechium edule HOM05D005383 ORTHO05D006722 3.0e-80 303.1 388 67.8
Duzib248G0552 Durio zibethinus HOM05D005383 ORTHO05D006722 3.9e-80 302.8 380 57.1
Gohir.A01G182000 Gossypium hirsutum HOM05D005383 ORTHO05D006722 3.9e-80 302.8 381 71.1
BcaC01g06075 Brassica carinata HOM05D005383 ORTHO05D006722 8.7e-80 301.6 396 70.7
Gohir.D01G173100 Gossypium hirsutum HOM05D005383 ORTHO05D006722 1.5e-79 300.8 381 70.9
Gorai.002G214700 Gossypium raimondii HOM05D005383 ORTHO05D006722 3.3e-79 299.7 381 70.6
BraA03t10921Z Brassica rapa HOM05D005383 ORTHO05D006722 4.3e-79 299.3 394 58.1
CiPaw.05G051100 Carya illinoinensis HOM05D005383 ORTHO05D006722 4.3e-79 299.3 380 68.7
Thecc.02G025800 Theobroma cacao HOM05D005383 ORTHO05D006722 2.1e-78 297.0 380 70.8
BolC3t14307H Brassica oleracea HOM05D005383 ORTHO05D006722 2.8e-78 296.6 395 57.2
Atru.chr6.733 Acer truncatum HOM05D005383 ORTHO05D006722 3.7e-78 296.2 388 69.6
arahy.Tifrunner.gnm1.ann1.UJ0XJV Arachis hypogaea HOM05D005383 ORTHO05D006722 3.1e-77 293.1 380 70.8
Ca_00052_v3 Cicer arietinum L. HOM05D005383 ORTHO05D006722 6.9e-77 292.0 389 66.1
TPR.G2110 Trifolium pratense HOM05D005383 ORTHO05D006722 6.9e-77 292.0 392 69.6
GSVIVG01023286001 Vitis vinifera HOM05D005383 ORTHO05D006722 1.2e-76 291.2 384 67.2
BcaB08g35467 Brassica carinata HOM05D005383 ORTHO05D006722 2.0e-76 290.4 387 67.7
Ciclev10001534m.g Citrus clementina HOM05D005383 ORTHO05D006722 2.0e-76 290.4 389 67.6
Nn5g27588 Nelumbo nucifera HOM05D005383 ORTHO05D006722 4.5e-76 289.3 377 69.2
Eucgr.G00356 Eucalyptus grandis HOM05D005383 ORTHO05D006722 1.7e-75 287.3 390 69.0
Lj4g0022432 Lotus japonicus HOM05D005383 ORTHO05D006722 3.8e-75 286.2 389 68.1
Nitab4.5_0009812g0010 Nicotiana tabacum HOM05D005383 ORTHO05D006722 6.4e-75 285.4 375 67.2
FvH4_5g28700 Fragaria vesca HOM05D005383 ORTHO05D006722 8.4e-75 285.0 381 66.4
FAN08G2879 Fragaria x ananassa HOM05D005383 ORTHO05D006722 1.1e-74 284.6 381 66.1
MD08G1239600 Malus domestica HOM05D005383 ORTHO05D006722 1.4e-74 284.3 385 66.2
Sed0022153 Sechium edule HOM05D005383 ORTHO05D006722 1.9e-74 283.9 388 68.6
Prupe.1G576100 Prunus persica HOM05D005383 ORTHO05D006722 4.2e-74 282.7 384 58.3
Nitab4.5_0000548g0200 Nicotiana tabacum HOM05D005383 ORTHO05D006722 7.1e-74 282.0 375 66.9
FAN13G0305 Fragaria x ananassa HOM05D005383 ORTHO05D006722 3.5e-73 279.6 404 63.1
Glyma.08G126300 Glycine max HOM05D005383 ORTHO05D006722 3.5e-73 279.6 389 66.1
EL10Ac2g02705 Beta vulgaris HOM05D005383 ORTHO05D006722 4.6e-73 279.3 379 69.4
Ciclev10003783m.g Citrus clementina HOM05D005383 ORTHO05D006722 6.0e-73 278.9 389 66.8
Cc02_g22940 Coffea canephora HOM05D005383 ORTHO05D006722 7.9e-73 278.5 387 65.9
CsaV3_5G029920 Cucumis sativus L. HOM05D005383 ORTHO05D006722 7.9e-73 278.5 389 67.4
VMungo0251G3735 Vigna mungo HOM05D005383 ORTHO05D006722 1.0e-72 278.1 389 65.3
Lalb_Chr07g0185851 Lupinus albus HOM05D005383 ORTHO05D006722 1.3e-72 277.7 396 64.6
RcHm_v2.0_Chr7g0220861 Rosa chinensis HOM05D005383 ORTHO05D006722 1.8e-72 277.3 383 66.3
Glyma.05G167900 Glycine max HOM05D005383 ORTHO05D006722 6.7e-72 275.4 389 65.6
Solyc03g083310.4 Solanum lycopersicum HOM05D005383 ORTHO05D006722 8.7e-72 275.0 381 63.0
TWI23G0375 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 1.1e-71 274.6 389 66.3
CSS0013900 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 1.9e-71 273.9 382 64.4
CSS0016011 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 1.9e-71 273.9 382 64.4
MELO3C011837.2 Cucumis melo HOM05D005383 ORTHO05D006722 1.9e-71 273.9 389 66.8
Phvul.002G248200 Phaseolus vulgaris HOM05D005383 ORTHO05D006722 1.9e-71 273.9 388 64.7
Haze_01820 Corylus avellana HOM05D005383 ORTHO05D006722 5.6e-71 272.3 408 52.9
Psat1g221920 Pisum sativum HOM05D005383 ORTHO05D006722 7.4e-71 271.9 393 65.6
Potri.004G221700 Populus trichocarpa HOM05D005383 ORTHO05D006722 9.6e-71 271.6 387 63.8
Manes.10G120600 Manihot esculenta HOM05D005383 ORTHO05D006722 1.3e-70 271.2 380 66.3
Potri.003G010400 Populus trichocarpa HOM05D005383 ORTHO05D006722 2.1e-70 270.4 387 65.4
CiPaw.06G143700 Carya illinoinensis HOM05D005383 ORTHO05D006722 3.7e-70 269.6 380 55.3
Lalb_Chr13g0295611 Lupinus albus HOM05D005383 ORTHO05D006722 1.1e-69 268.1 396 66.9
Hund12945 Selenicereus undatus HOM05D005383 ORTHO05D006722 2.4e-69 266.9 367 58.6
TAR628G0519 Trochodendron aralioides HOM05D005383 ORTHO05D006722 3.1e-69 266.5 378 64.0
BcaC01g06099 Brassica carinata HOM05D005383 ORTHO05D006722 9.0e-69 265.0 380 64.2
PGR042G1418 Punica granatum HOM05D005383 ORTHO05D006722 7.6e-68 261.9 397 63.7
PGSC0003DMG400009082 Solanum tuberosum HOM05D005383 ORTHO05D006722 7.6e-68 261.9 381 62.2
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 1.7e-67 260.8 353 64.6
Rhsim11G0125900 Rhododendron simsii HOM05D005383 ORTHO05D006722 4.9e-67 259.2 373 63.3
TAR381G0956 Trochodendron aralioides HOM05D005383 ORTHO05D006722 6.5e-67 258.8 382 64.4
Dinv01847 Davidia involucrata HOM05D005383 ORTHO05D006722 5.5e-66 255.8 371 63.9
TWI59G0781 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 1.2e-65 254.6 389 67.1
vmacro01730 Vaccinium macrocarpon HOM05D005383 ORTHO05D006722 7.9e-65 251.9 384 65.9
MSTRG.5117 Avicennia marina HOM05D005383 ORTHO05D006722 2.3e-64 250.4 387 60.5
Sopen03g023060 Solanum pennellii HOM05D005383 ORTHO05D006722 6.7e-64 248.8 383 60.8
DCAR_025351 Daucus carota HOM05D005383 ORTHO05D006722 8.7e-64 248.4 348 63.2
CAN.G968.1 Capsicum annuum HOM05D005383 ORTHO05D006722 1.1e-63 248.1 371 61.7
arahy.Tifrunner.gnm1.ann1.E4SRBI Arachis hypogaea HOM05D005383 ORTHO05D006722 7.4e-63 245.4 358 68.7
arahy.Tifrunner.gnm1.ann1.I6AGPX Arachis hypogaea HOM05D005383 ORTHO05D006722 6.3e-62 242.3 358 68.7
Lsat_1_v5_gn_4_6600 Lactuca sativa HOM05D005383 ORTHO05D006722 6.3e-62 242.3 393 60.6
Hma1.2p1_1108F.1_g257860 Hydrangea macrophylla HOM05D005383 ORTHO05D006722 1.8e-61 240.7 380 61.1
Migut.B00804 Erythranthe guttata HOM05D005383 ORTHO05D006722 5.9e-60 235.7 349 66.5
PSO063G2254 Papaver somniferum HOM05D005383 ORTHO05D006722 7.7e-60 235.3 384 58.9
Aqoxy6G00141 Aquilegia oxysepala HOM05D005383 ORTHO05D006722 2.9e-59 233.4 342 64.9
SGA_v2.0_scaffold42G15921 Striga asiatica HOM05D005383 ORTHO05D006722 3.8e-59 233.0 394 59.4
Actinidia00189 Actinidia chinensis HOM05D005383 ORTHO05D006722 1.9e-58 230.7 255 78.0
HanXRQChr08g0209021 Helianthus annuus HOM05D005383 ORTHO05D006722 1.4e-56 224.6 347 61.4
PSO017G2626 Papaver somniferum HOM05D005383 ORTHO05D006722 3.0e-56 223.4 384 57.8
CDE02G2650 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 5.1e-56 222.6 388 59.5
CDE08G1140 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 5.1e-56 222.6 388 59.0
HanXRQChr04g0103661 Helianthus annuus HOM05D005383 ORTHO05D006722 5.1e-56 222.6 399 56.9
Lj9A301T38 Lonicera japonica HOM05D005383 ORTHO05D006722 7.4e-55 218.8 371 61.7
Lsat_1_v5_gn_8_160061 Lactuca sativa HOM05D005383 ORTHO05D006722 1.4e-53 214.5 269 68.8
Sabra03G0005300 Salix brachista HOM05D005383 ORTHO05D006722 3.1e-53 213.4 505 33.7
ECA233G1887 Erigeron canadensis HOM05D005383 ORTHO05D006722 5.3e-53 212.6 375 61.6
Ciclev10003892m.g Citrus clementina HOM05D005383 ORTHO05D006722 1.2e-52 211.5 340 55.9
unitig_699.g19853 Utricularia gibba HOM05D005383 ORTHO05D006722 2.6e-52 210.3 382 38.7
HPP92_009272 Vanilla planifolia HOM05D005383 ORTHO05D006722 6.5e-43 179.1 373 54.4
Oeu036675.1 Olea europaea HOM05D005383 ORTHO05D006722 7.2e-42 175.6 315 62.5
ATR0071G030 Amborella trichopoda HOM05D005383 ORTHO05D006722 6.1e-41 172.6 339 60.2
HPP92_013744 Vanilla planifolia HOM05D006763 ORTHO05D008659 8.0e-41 172.2 235 72.8
Os02g0551900 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 3.9e-40 169.9 355 54.1
ClCG11G013400 Citrullus lanatus HOM05D005383 ORTHO05D006722 2.0e-39 167.5 134 82.1
MSTRG.16504 Avicennia marina HOM05D005383 ORTHO05D006722 7.4e-39 165.6 316 62.7
Os05g0106000 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 1.4e-37 161.4 407 50.1
Sc07g0004970 Simmondsia chinensis HOM05D005383 ORTHO05D006722 3.1e-37 160.2 346 59.5
Zm00001eb181970 Zea mays HOM05D005383 ORTHO05D006722 1.2e-36 158.3 249 67.5
Zm00001eb243510 Zea mays HOM05D005383 ORTHO05D006722 2.0e-36 157.5 249 67.1
unitig_747.g21262 Utricularia gibba HOM05D005383 ORTHO05D006722 2.6e-36 157.1 377 52.0
FAN04G2588 Fragaria x ananassa HOM05D005383 ORTHO05D006722 1.3e-35 154.8 127 74.0
Actinidia39015 Actinidia chinensis HOM05D005383 ORTHO05D006722 2.2e-35 154.1 123 75.6
MD15G1431100 Malus domestica HOM05D005383 ORTHO05D006722 1.1e-34 151.8 256 63.7
Zm00001eb267130 Zea mays HOM05D005383 ORTHO05D006722 9.4e-34 148.7 378 49.2
Peaxi162Scf03254g00012 Petunia axillaris HOM05D005383 ORTHO05D006722 6.8e-32 142.5 178 46.1
AUR62041111 Chenopodium quinoa HOM05D005383 ORTHO05D006722 1.5e-31 141.4 193 48.7
Sabra01G0167800 Salix brachista HOM05D005383 ORTHO05D006722 2.4e-29 134.0 190 44.7
FAN18G2475 Fragaria x ananassa HOM05D005383 ORTHO05D006722 9.4e-26 122.1 127 63.0
AagrBONN_evm.TU.Sc2ySwM_228.1706 Anthoceros agrestis HOM05D005383 ORTHO05D006722 2.1e-25 120.9 240 62.9
CAN.G982.21 Capsicum annuum HOM05D005383 ORTHO05D006722 2.1e-25 120.9 186 42.5
CBR_g52462 Chara braunii HOM05D005383 ORTHO05D006722 8.8e-24 115.5 254 58.3
SEGI_13518 Sequoiadendron giganteum HOM05D005383 ORTHO05D006722 8.8e-24 115.5 115 63.5
Mapoly0095s0037 Marchantia polymorpha HOM05D005383 ORTHO05D006722 5.7e-23 112.8 357 49.0
Pp3c7_7980 Physcomitrium patens HOM05D005383 ORTHO05D006722 4.5e-20 103.2 281 55.2
Peaxi162Scf00003g03953 Petunia axillaris HOM05D000011 ORTHO05D011267 3.6e-17 93.6 167 37.7
SMO347G0081 Selaginella moellendorffii HOM05D005383 ORTHO05D006722 1.0e-16 92.0 227 55.1
ATR0071G005 Amborella trichopoda HOM05D005383 ORTHO05D006722 5.2e-16 89.7 71 60.6
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 2.0e-12 77.8 58 86.2
arahy.Tifrunner.gnm1.ann1.0L29ML Arachis hypogaea HOM05D005383 ORTHO05D006722 3.5e-12 77.0 56 89.3
arahy.Tifrunner.gnm1.ann1.XX0GIY Arachis hypogaea HOM05D005383 ORTHO05D006722 1.7e-11 74.7 56 87.5
arahy.Tifrunner.gnm1.ann1.VA1YNF Arachis hypogaea HOM05D005383 ORTHO05D006722 4.0e-08 63.5 84 63.1


User provided reference genes

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