Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G19830 Aethionema arabicum HOM05D003333 ORTHO05D003836 2.2e-34 148.3 69 100.0
Aa31LG2G19800 Aethionema arabicum HOM05D003333 ORTHO05D003836 2.1e-29 131.7 65 89.2
Aa31LG2G19790 Aethionema arabicum HOM05D003333 ORTHO05D003836 8.4e-26 119.8 65 83.1
Aa31LG2G19850 Aethionema arabicum HOM05D003333 ORTHO05D003836 1.1e-25 119.4 65 80.0
Aa31LG2G19860 Aethionema arabicum HOM05D003333 ORTHO05D003836 1.1e-25 119.4 65 81.5
Aa31LG2G19840 Aethionema arabicum HOM05D003333 ORTHO05D003836 3.6e-21 104.4 67 76.1
Aa31sc1432G10 Aethionema arabicum HOM05D003333 ORTHO05D003836 6.9e-20 100.1 65 70.8
BcaNung02970 Brassica carinata HOM05D003333 ORTHO05D003836 6.4e-18 93.6 62 64.5
C01p08250 Brassica napus HOM05D003333 ORTHO05D003836 8.4e-18 93.2 62 62.9
BolC1t00813H Brassica oleracea HOM05D003333 ORTHO05D003836 8.4e-18 93.2 62 62.9
Aa31LG2G19780 Aethionema arabicum HOM05D003333 ORTHO05D003836 2.4e-17 91.7 64 59.4
BraA01t00704Z Brassica rapa HOM05D003333 ORTHO05D003836 3.2e-17 91.3 62 61.3
BcaNung00576 Brassica carinata HOM05D003333 ORTHO05D003836 9.3e-17 89.7 64 62.5
BolC7t46270H Brassica oleracea HOM05D003333 ORTHO05D003836 9.3e-17 89.7 64 62.5
Sp7g28530 Schrenkiella parvula HOM05D003333 ORTHO05D003836 1.2e-16 89.4 64 57.8
A01p07610 Brassica napus HOM05D003333 ORTHO05D003836 1.6e-16 89.0 62 59.7
CARHR238520 Cardamine hirsuta HOM05D003333 ORTHO05D003836 2.1e-16 88.6 62 64.5
Sp7g28550 Schrenkiella parvula HOM05D003333 ORTHO05D003836 2.1e-16 88.6 62 64.5
Thecc.09G028300 Theobroma cacao HOM05D003333 ORTHO05D003836 2.1e-16 88.6 63 55.6
BcaC09g51858 Brassica carinata HOM05D003333 ORTHO05D003836 2.7e-16 88.2 60 61.7
Duzib168G0432 Durio zibethinus HOM05D003333 ORTHO05D003836 2.7e-16 88.2 63 55.6
Dinv10065 Davidia involucrata HOM05D003333 ORTHO05D003836 3.5e-16 87.8 61 59.0
Thhalv10014209m.g Eutrema salsugineum HOM05D003333 ORTHO05D003836 4.6e-16 87.4 62 62.9
Gohir.A05G052600 Gossypium hirsutum HOM05D003333 ORTHO05D003836 4.6e-16 87.4 61 55.7
Manes.14G145200 Manihot esculenta HOM05D003333 ORTHO05D003836 6.0e-16 87.0 61 60.7
Dinv43259 Davidia involucrata HOM05D003333 ORTHO05D003836 7.8e-16 86.7 61 59.0
THA.LOC104803544 Tarenaya hassleriana HOM05D003333 ORTHO05D003836 7.8e-16 86.7 61 59.0
AT4G30640 Arabidopsis thaliana HOM05D003333 ORTHO05D003836 1.3e-15 85.9 62 62.9
BcaNung02972 Brassica carinata HOM05D003333 ORTHO05D003836 1.7e-15 85.5 63 58.7
CANSAT11G2442 Cannabis sativa HOM05D003333 ORTHO05D003836 1.7e-15 85.5 62 56.5
Gohir.D05G054300 Gossypium hirsutum HOM05D003333 ORTHO05D003836 1.7e-15 85.5 61 55.7
Gorai.009G056000 Gossypium raimondii HOM05D003333 ORTHO05D003836 1.7e-15 85.5 61 55.7
Rhsim01G0028000 Rhododendron simsii HOM05D003333 ORTHO05D003836 2.3e-15 85.1 61 54.1
A03p60160 Brassica napus HOM05D003333 ORTHO05D003836 3.9e-15 84.3 63 55.6
C07p58110 Brassica napus HOM05D003333 ORTHO05D003836 3.9e-15 84.3 62 61.3
Sp7g28520 Schrenkiella parvula HOM05D003333 ORTHO05D003836 3.9e-15 84.3 65 56.9
BcaNung00573 Brassica carinata HOM05D003333 ORTHO05D003836 5.1e-15 84.0 63 55.6
BcaNung00575 Brassica carinata HOM05D003333 ORTHO05D003836 5.1e-15 84.0 61 59.0
A03p60200 Brassica napus HOM05D003333 ORTHO05D003836 5.1e-15 84.0 61 59.0
C07p58100 Brassica napus HOM05D003333 ORTHO05D003836 5.1e-15 84.0 61 59.0
BolC7t46269H Brassica oleracea HOM05D003333 ORTHO05D003836 5.1e-15 84.0 61 59.0
AL7G21500 Arabidopsis lyrata HOM05D003333 ORTHO05D003836 6.6e-15 83.6 62 61.3
BcaC09g51854 Brassica carinata HOM05D003333 ORTHO05D003836 8.7e-15 83.2 63 57.1
A03p60210 Brassica napus HOM05D003333 ORTHO05D003836 8.7e-15 83.2 64 59.4
C07p58070 Brassica napus HOM05D003333 ORTHO05D003836 8.7e-15 83.2 63 55.6
BolC1t00817H Brassica oleracea HOM05D003333 ORTHO05D003836 8.7e-15 83.2 63 57.1
BolC7t46266H Brassica oleracea HOM05D003333 ORTHO05D003836 8.7e-15 83.2 63 55.6
BcaNung04560 Brassica carinata HOM05D003333 ORTHO05D003836 1.1e-14 82.8 64 57.8
A08p19150 Brassica napus HOM05D003333 ORTHO05D003836 1.1e-14 82.8 62 59.7
C01p08260 Brassica napus HOM05D003333 ORTHO05D003836 1.1e-14 82.8 63 57.1
C03p88610 Brassica napus HOM05D003333 ORTHO05D003836 1.1e-14 82.8 62 59.7
BolC3t21167H Brassica oleracea HOM05D003333 ORTHO05D003836 1.1e-14 82.8 62 59.7
Carub.0007s0992 Capsella rubella HOM05D003333 ORTHO05D003836 1.1e-14 82.8 62 61.3
PSO541G3342 Papaver somniferum HOM05D003333 ORTHO05D003836 1.1e-14 82.8 60 58.3
BcaB03g12653 Brassica carinata HOM05D003333 ORTHO05D003836 1.5e-14 82.4 62 59.7
Cpa.g.sc46.170 Carica papaya HOM05D003333 ORTHO05D003836 1.9e-14 82.0 65 50.8
TAR636G2329 Trochodendron aralioides HOM05D003333 ORTHO05D003836 1.9e-14 82.0 62 56.5
BraA08t33876Z Brassica rapa HOM05D003333 ORTHO05D003836 2.5e-14 81.6 62 58.1
COL.COLO4_18825 Corchorus olitorius HOM05D003333 ORTHO05D003836 2.5e-14 81.6 61 52.5
Potri.018G104900 Populus trichocarpa HOM05D003333 ORTHO05D003836 2.5e-14 81.6 61 54.1
Nn8g39960 Nelumbo nucifera HOM05D003333 ORTHO05D003836 3.3e-14 81.3 63 55.6
BcaNung04559 Brassica carinata HOM05D003333 ORTHO05D003836 4.3e-14 80.9 61 55.7
Ciclev10008985m.g Citrus clementina HOM05D003333 ORTHO05D003836 5.6e-14 80.5 62 53.2
EL10Ac8g18939 Beta vulgaris HOM05D003333 ORTHO05D003836 7.3e-14 80.1 63 50.8
Nitab4.5_0002724g0090 Nicotiana tabacum HOM05D003333 ORTHO05D003836 7.3e-14 80.1 61 55.7
Actinidia38315 Actinidia chinensis HOM05D003333 ORTHO05D003836 9.6e-14 79.7 62 54.8
BcaNung04558 Brassica carinata HOM05D003333 ORTHO05D003836 9.6e-14 79.7 63 58.7
vmacro16794 Vaccinium macrocarpon HOM05D003333 ORTHO05D003836 9.6e-14 79.7 61 52.5
VMungo1215G1683 Vigna mungo HOM05D003333 ORTHO05D003836 9.6e-14 79.7 61 52.5
BraA03t15061Z Brassica rapa HOM05D003333 ORTHO05D003836 1.3e-13 79.3 67 56.7
HanXRQChr09g0244551 Helianthus annuus HOM05D003333 ORTHO05D003836 1.3e-13 79.3 62 51.6
Oeu021319.1 Olea europaea HOM05D003333 ORTHO05D003836 1.3e-13 79.3 64 50.0
Atru.chr6.2482 Acer truncatum HOM05D003333 ORTHO05D003836 1.6e-13 79.0 61 49.2
Nitab4.5_0002320g0010 Nicotiana tabacum HOM05D003333 ORTHO05D003836 1.6e-13 79.0 61 54.1
Prupe.7G264700 Prunus persica HOM05D003333 ORTHO05D003836 1.6e-13 79.0 62 54.8
Sabra18G0089700 Salix brachista HOM05D003333 ORTHO05D003836 1.6e-13 79.0 61 54.1
Hund08925 Selenicereus undatus HOM05D003333 ORTHO05D003836 1.6e-13 79.0 61 54.1
AL5G22560 Arabidopsis lyrata HOM05D003333 ORTHO05D003836 2.1e-13 78.6 63 50.8
PGR142G2767 Punica granatum HOM05D003333 ORTHO05D003836 2.1e-13 78.6 65 49.2
Eucgr.L01446 Eucalyptus grandis HOM05D003333 ORTHO05D003836 2.8e-13 78.2 61 54.1
CiPaw.15G166600 Carya illinoinensis HOM05D003333 ORTHO05D003836 3.6e-13 77.8 63 49.2
AUR62025341 Chenopodium quinoa HOM05D003333 ORTHO05D003836 4.8e-13 77.4 63 50.8
Eucgr.C02501 Eucalyptus grandis HOM05D003333 ORTHO05D003836 6.2e-13 77.0 61 52.5
Eucgr.L03182 Eucalyptus grandis HOM05D003333 ORTHO05D003836 6.2e-13 77.0 61 52.5
Ah.14g084600 Amaranthus hybridus HOM05D003333 ORTHO05D003836 8.1e-13 76.6 61 47.5
Carub.0005s1013 Capsella rubella HOM05D003333 ORTHO05D003836 8.1e-13 76.6 63 52.4
Ah.14g084580 Amaranthus hybridus HOM05D003333 ORTHO05D003836 1.1e-12 76.3 61 49.2
Cfa020808 Carpinus fangiana HOM05D003333 ORTHO05D003836 1.1e-12 76.3 63 50.8
Dinv41364 Davidia involucrata HOM05D003333 ORTHO05D003836 1.1e-12 76.3 61 52.5
Aa31LG3G13720 Aethionema arabicum HOM05D003333 ORTHO05D003836 1.4e-12 75.9 60 55.0
MD02G1006200 Malus domestica HOM05D003333 ORTHO05D003836 1.8e-12 75.5 65 53.8
Sp6g19570 Schrenkiella parvula HOM05D003333 ORTHO05D003836 1.8e-12 75.5 61 52.5
ATR0019G010 Amborella trichopoda HOM05D003333 ORTHO05D003836 2.4e-12 75.1 63 47.6
AUR62028344 Chenopodium quinoa HOM05D003333 ORTHO05D003836 2.4e-12 75.1 62 50.0
Glyma.02G205200 Glycine max HOM05D003333 ORTHO05D003836 2.4e-12 75.1 61 49.2
TWI34G1096 Tripterygium wilfordii HOM05D003333 ORTHO05D003836 2.4e-12 75.1 61 49.2
MELO3C004126.2 Cucumis melo HOM05D003333 ORTHO05D003836 3.1e-12 74.7 62 54.8
Phvul.003G155100 Phaseolus vulgaris HOM05D003333 ORTHO05D003836 4.0e-12 74.3 61 49.2
Carub.0005s1014 Capsella rubella HOM05D003333 ORTHO05D003836 5.3e-12 73.9 63 52.4
Lsat_1_v5_gn_7_50080 Lactuca sativa HOM05D003333 ORTHO05D003836 5.3e-12 73.9 68 48.5
BraA07t27986Z Brassica rapa HOM05D003333 ORTHO05D003836 6.9e-12 73.6 63 54.0
QL02p093681 Quercus lobata HOM05D003333 ORTHO05D003836 6.9e-12 73.6 62 51.6
QL02p093703 Quercus lobata HOM05D003333 ORTHO05D003836 6.9e-12 73.6 62 51.6
A07p01860 Brassica napus HOM05D003333 ORTHO05D003836 9.0e-12 73.2 63 54.0
Sopen07g001850 Solanum pennellii HOM05D003333 ORTHO05D003836 1.2e-11 72.8 61 47.5
MSTRG.6153 Avicennia marina HOM05D003333 ORTHO05D003836 2.0e-11 72.0 61 49.2
AUR62025340 Chenopodium quinoa HOM05D003333 ORTHO05D003836 2.0e-11 72.0 64 50.0
CsaV3_2G007600 Cucumis sativus L. HOM05D003333 ORTHO05D003836 2.0e-11 72.0 62 53.2
Thhalv10014217m.g Eutrema salsugineum HOM05D003333 ORTHO05D003836 2.0e-11 72.0 61 55.7
SalBow1G6609 Salvia bowleyana HOM05D003333 ORTHO05D003836 2.0e-11 72.0 61 50.8
ClCG02G014400 Citrullus lanatus HOM05D003333 ORTHO05D003836 2.6e-11 71.6 62 53.2
A10p15260 Brassica napus HOM05D003333 ORTHO05D003836 3.4e-11 71.2 61 50.8
BraA10t43607Z Brassica rapa HOM05D003333 ORTHO05D003836 3.4e-11 71.2 61 50.8
DCAR_019403 Daucus carota HOM05D003333 ORTHO05D003836 3.4e-11 71.2 61 49.2
Sed0000092 Sechium edule HOM05D003333 ORTHO05D003836 4.5e-11 70.9 62 53.2
AT5G57900 Arabidopsis thaliana HOM05D003333 ORTHO05D003836 5.8e-11 70.5 63 52.4
C07p58120 Brassica napus HOM05D003333 ORTHO05D003836 7.6e-11 70.1 54 57.4
Oeu018383.3 Olea europaea HOM05D003333 ORTHO05D003836 7.6e-11 70.1 62 48.4
QL02p093741 Quercus lobata HOM05D003333 ORTHO05D003836 7.6e-11 70.1 60 51.7
Carub.0008s1843 Capsella rubella HOM05D003333 ORTHO05D003836 9.9e-11 69.7 61 54.1
CARHR271670 Cardamine hirsuta HOM05D003333 ORTHO05D003836 1.3e-10 69.3 61 52.5
arahy.Tifrunner.gnm1.ann1.GH9EZK Arachis hypogaea HOM05D003333 ORTHO05D003836 1.7e-10 68.9 61 45.9
THA.LOC104811832 Tarenaya hassleriana HOM05D003333 ORTHO05D003836 1.7e-10 68.9 62 50.0
C09p49770 Brassica napus HOM05D003333 ORTHO05D003836 2.2e-10 68.6 61 49.2
BolC9t57828H Brassica oleracea HOM05D003333 ORTHO05D003836 2.2e-10 68.6 61 49.2
CSS0000248 Camellia sinensis var. sinensis HOM05D003333 ORTHO05D003836 2.2e-10 68.6 59 47.5
Oeu021312.1 Olea europaea HOM05D003333 ORTHO05D003836 2.2e-10 68.6 61 47.5
Solyc07g005750.3 Solanum lycopersicum HOM05D003333 ORTHO05D003836 2.9e-10 68.2 67 44.8
Peaxi162Scf00267g00510 Petunia axillaris HOM05D003333 ORTHO05D003836 3.8e-10 67.8 60 51.7
AL8G33960 Arabidopsis lyrata HOM05D003333 ORTHO05D003836 4.9e-10 67.4 61 50.8
CDE02G3474 Ceratophyllum demersum HOM05D003333 ORTHO05D003836 4.9e-10 67.4 63 44.4
PGSC0003DMG400011146 Solanum tuberosum HOM05D003333 ORTHO05D003836 4.9e-10 67.4 64 43.8
SGA_v2.0_scaffold265G46094 Striga asiatica HOM05D003333 ORTHO05D003836 4.9e-10 67.4 61 45.9
Lj9A718T41 Lonicera japonica HOM05D003333 ORTHO05D003836 8.4e-10 66.6 56 53.6
Hma1.2p1_0222F.1_g093690 Hydrangea macrophylla HOM05D003333 ORTHO05D003836 1.1e-09 66.2 59 47.5
FvH4_1g00760 Fragaria vesca HOM05D003333 ORTHO05D003836 1.4e-09 65.9 61 49.2
FAN26G2607 Fragaria x ananassa HOM05D003333 ORTHO05D003836 1.4e-09 65.9 61 49.2
FAN28G1118 Fragaria x ananassa HOM05D003333 ORTHO05D003836 1.4e-09 65.9 61 49.2
Lalb_Chr13g0300781 Lupinus albus HOM05D003333 ORTHO05D003836 1.4e-09 65.9 61 44.3
Sc08g0009270 Simmondsia chinensis HOM05D003333 ORTHO05D003836 1.4e-09 65.9 63 47.6
FAN23G0545 Fragaria x ananassa HOM05D003333 ORTHO05D003836 1.9e-09 65.5 61 47.5
Aqoxy7G03374 Aquilegia oxysepala HOM05D003333 ORTHO05D003836 2.4e-09 65.1 64 51.6
FAN18G2716 Fragaria x ananassa HOM05D003333 ORTHO05D003836 5.4e-09 63.9 61 47.5
Lj4g0011279 Lotus japonicus HOM05D003333 ORTHO05D003836 7.1e-09 63.5 57 43.9
FAN04G1412 Fragaria x ananassa HOM05D003333 ORTHO05D003836 9.3e-09 63.2 61 47.5
FAN13G1111 Fragaria x ananassa HOM05D003333 ORTHO05D003836 9.3e-09 63.2 61 47.5
RcHm_v2.0_Chr2g0085481 Rosa chinensis HOM05D003333 ORTHO05D003836 9.3e-09 63.2 61 45.9
FvH4_5g27040 Fragaria vesca HOM05D003333 ORTHO05D003836 2.1e-08 62.0 61 47.5
BolC7t46271H Brassica oleracea HOM05D003333 ORTHO05D003836 2.7e-08 61.6 51 54.9
BcaC06g36466 Brassica carinata HOM05D003333 ORTHO05D003836 4.6e-08 60.8 64 48.4
Migut.J01369 Erythranthe guttata HOM05D003333 ORTHO05D003836 4.6e-08 60.8 63 42.9
Psat0s3930g0160 Pisum sativum HOM05D003333 ORTHO05D003836 4.6e-08 60.8 54 46.3
CAN.G160.47 Capsicum annuum HOM05D003333 ORTHO05D003836 6.0e-08 60.5 57 45.6
C07p03970 Brassica napus HOM05D003333 ORTHO05D003836 1.8e-07 58.9 53 50.9
Ca_21138_v3 Cicer arietinum L. HOM05D003333 ORTHO05D003836 6.7e-07 57.0 50 46.0
Ca_21143_v3 Cicer arietinum L. HOM05D003333 ORTHO05D003836 6.7e-07 57.0 50 46.0
Medtr4g130620 Medicago truncatula HOM05D003333 ORTHO05D003836 8.7e-07 56.6 58 37.9
SMO118G0396 Selaginella moellendorffii HOM05D003333 ORTHO05D003836 3.3e-06 54.7 60 36.7
Peaxi162Scf00753g00012 Petunia axillaris HOM05D003333 ORTHO05D003836 4.3e-06 54.3 62 41.9
FAN08G3193 Fragaria x ananassa HOM05D003333 ORTHO05D003836 7.4e-06 53.5 61 41.0
FAN21G3730 Fragaria x ananassa HOM05D003333 ORTHO05D003836 7.4e-06 53.5 61 41.0
FAN26G3012 Fragaria x ananassa HOM05D003333 ORTHO05D003836 7.4e-06 53.5 61 41.0


User provided reference genes

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