Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG11G600 Aethionema arabicum HOM05D006586 ORTHO05D008254 3.2e-110 401.7 203 100.0
Carub.0008s2381 Capsella rubella HOM05D006586 ORTHO05D008254 1.2e-75 287.0 195 73.3
Sp2g26210 Schrenkiella parvula HOM05D006586 ORTHO05D008254 1.2e-75 287.0 206 69.9
AL8G40110 Arabidopsis lyrata HOM05D006586 ORTHO05D008254 2.9e-74 282.3 195 71.8
AT5G63080 Arabidopsis thaliana HOM05D006586 ORTHO05D008254 1.4e-73 280.0 195 70.8
Thhalv10004134m.g Eutrema salsugineum HOM05D006586 ORTHO05D008254 4.1e-73 278.5 208 68.8
CARHR276890 Cardamine hirsuta HOM05D006586 ORTHO05D008254 1.6e-72 276.6 196 71.4
BcaC04g23364 Brassica carinata HOM05D006586 ORTHO05D008254 4.3e-70 268.5 206 67.0
C09p09140 Brassica napus HOM05D006586 ORTHO05D008254 5.6e-70 268.1 203 68.0
BolC9t53826H Brassica oleracea HOM05D006586 ORTHO05D008254 9.5e-70 267.3 206 66.5
A09p08080 Brassica napus HOM05D006586 ORTHO05D008254 4.7e-69 265.0 206 66.0
BraA09t36459Z Brassica rapa HOM05D006586 ORTHO05D008254 4.7e-69 265.0 206 66.0
BcaB04g19943 Brassica carinata HOM05D006586 ORTHO05D008254 9.9e-67 257.3 206 64.6
THA.LOC104821484 Tarenaya hassleriana HOM05D006586 ORTHO05D008254 9.6e-62 240.7 194 60.3
COL.COLO4_30118 Corchorus olitorius HOM05D006586 ORTHO05D008254 4.4e-51 205.3 190 55.8
Duzib205G0761 Durio zibethinus HOM05D006586 ORTHO05D008254 6.4e-50 201.4 188 55.3
Thecc.03G024500 Theobroma cacao HOM05D006586 ORTHO05D008254 1.1e-49 200.7 190 52.6
Gohir.D12G273500 Gossypium hirsutum HOM05D006586 ORTHO05D008254 1.2e-48 197.2 200 52.0
Gorai.008G293900 Gossypium raimondii HOM05D006586 ORTHO05D008254 2.3e-47 193.0 192 53.1
Atru.chr9.2534_Atru.chr9.2535 Acer truncatum HOM05D006586 ORTHO05D008254 5.1e-47 191.8 189 52.9
Gohir.A12G272800 Gossypium hirsutum HOM05D006586 ORTHO05D008254 5.1e-47 191.8 192 52.6
arahy.Tifrunner.gnm1.ann1.Y9SFAP Arachis hypogaea HOM05D006586 ORTHO05D008254 4.3e-46 188.7 195 50.8
arahy.Tifrunner.gnm1.ann1.BDIM58 Arachis hypogaea HOM05D006586 ORTHO05D008254 9.6e-46 187.6 195 50.8
Lj9C445T6 Lonicera japonica HOM05D006586 ORTHO05D008254 1.8e-44 183.3 196 47.4
Ciclev10019926m.g Citrus clementina HOM05D006586 ORTHO05D008254 2.4e-44 183.0 189 50.8
TAR371G0860 Trochodendron aralioides HOM05D006586 ORTHO05D008254 2.4e-44 183.0 198 50.0
QL10p008791 Quercus lobata HOM05D006586 ORTHO05D008254 5.3e-44 181.8 193 48.7
Dinv20624 Davidia involucrata HOM05D006586 ORTHO05D008254 6.9e-44 181.4 198 47.0
Potri.015G080400 Populus trichocarpa HOM05D006586 ORTHO05D008254 6.9e-44 181.4 191 48.7
Prupe.5G169900 Prunus persica HOM05D006586 ORTHO05D008254 1.5e-43 180.3 194 46.9
Manes.14G062950 Manihot esculenta HOM05D006586 ORTHO05D008254 2.6e-43 179.5 189 48.1
FAN04G1931 Fragaria x ananassa HOM05D006586 ORTHO05D008254 7.6e-43 177.9 196 46.4
VMungo1309G1735 Vigna mungo HOM05D006586 ORTHO05D008254 9.9e-43 177.6 194 48.5
FAN18G2086 Fragaria x ananassa HOM05D006586 ORTHO05D008254 1.7e-42 176.8 196 46.9
Haze_07550 Corylus avellana HOM05D006586 ORTHO05D008254 4.9e-42 175.3 193 49.2
Actinidia19342 Actinidia chinensis HOM05D006586 ORTHO05D008254 6.4e-42 174.9 193 48.7
RcHm_v2.0_Chr7g0193061 Rosa chinensis HOM05D006586 ORTHO05D008254 8.4e-42 174.5 197 47.2
MD14G1175900 Malus domestica HOM05D006586 ORTHO05D008254 1.1e-41 174.1 195 45.1
Cfa019173 Carpinus fangiana HOM05D006586 ORTHO05D008254 1.9e-41 173.3 194 49.0
Phvul.009G175900 Phaseolus vulgaris HOM05D006586 ORTHO05D008254 1.9e-41 173.3 194 46.4
PGR083G0458 Punica granatum HOM05D006586 ORTHO05D008254 1.9e-41 173.3 199 45.7
CiPaw.11G023000 Carya illinoinensis HOM05D006586 ORTHO05D008254 4.2e-41 172.2 154 56.5
FAN08G2490 Fragaria x ananassa HOM05D006586 ORTHO05D008254 4.2e-41 172.2 199 44.2
Lsat_1_v5_gn_4_75921 Lactuca sativa HOM05D006586 ORTHO05D008254 4.2e-41 172.2 192 47.9
TPR.G28722 Trifolium pratense HOM05D006586 ORTHO05D008254 4.2e-41 172.2 194 46.4
GSVIVG01007692001 Vitis vinifera HOM05D006586 ORTHO05D008254 9.3e-41 171.0 194 49.0
Sed0000603 Sechium edule HOM05D006586 ORTHO05D008254 1.2e-40 170.6 200 47.5
HanXRQChr11g0348321 Helianthus annuus HOM05D006586 ORTHO05D008254 3.5e-40 169.1 197 46.7
Aqoxy1G03747 Aquilegia oxysepala HOM05D006586 ORTHO05D008254 4.6e-40 168.7 206 45.6
Rhsim08G0174900 Rhododendron simsii HOM05D006586 ORTHO05D008254 4.6e-40 168.7 193 45.6
ClCG06G017160 Citrullus lanatus HOM05D006586 ORTHO05D008254 6.0e-40 168.3 202 46.0
DCAR_016036 Daucus carota HOM05D006586 ORTHO05D008254 1.0e-39 167.5 192 46.9
Lj1g0001085 Lotus japonicus HOM05D006586 ORTHO05D008254 1.0e-39 167.5 195 47.2
FvH4_5g05750 Fragaria vesca HOM05D006586 ORTHO05D008254 1.8e-39 166.8 152 53.3
Aqoxy3G02831 Aquilegia oxysepala HOM05D006586 ORTHO05D008254 2.3e-39 166.4 206 45.1
Migut.O00130 Erythranthe guttata HOM05D006586 ORTHO05D008254 3.9e-39 165.6 188 44.7
Eucgr.B00243 Eucalyptus grandis HOM05D006586 ORTHO05D008254 5.1e-39 165.2 194 48.5
Cc04_g12530 Coffea canephora HOM05D006586 ORTHO05D008254 8.7e-39 164.5 195 46.2
Medtr3g077420 Medicago truncatula HOM05D006586 ORTHO05D008254 1.1e-38 164.1 199 43.2
Ca_16153_v3 Cicer arietinum L. HOM05D006586 ORTHO05D008254 1.5e-38 163.7 204 44.1
CsaV3_1G001320 Cucumis sativus L. HOM05D006586 ORTHO05D008254 1.9e-38 163.3 204 46.6
Oeu036011.1 Olea europaea HOM05D006586 ORTHO05D008254 9.6e-38 161.0 195 44.1
MELO3C026280.2 Cucumis melo HOM05D006586 ORTHO05D008254 2.1e-37 159.8 204 45.6
Nitab4.5_0006452g0010 Nicotiana tabacum HOM05D006586 ORTHO05D008254 2.8e-37 159.5 188 46.8
Nitab4.5_0001284g0040 Nicotiana tabacum HOM05D006586 ORTHO05D008254 3.7e-37 159.1 188 45.2
PSO832G2003 Papaver somniferum HOM05D006586 ORTHO05D008254 6.2e-37 158.3 196 45.4
MSTRG.23151 Avicennia marina HOM05D006586 ORTHO05D008254 8.1e-37 157.9 196 43.9
PSO063G4773 Papaver somniferum HOM05D006586 ORTHO05D008254 1.8e-36 156.8 196 45.4
Cpa.g.sc153.11 Carica papaya HOM05D006586 ORTHO05D008254 4.0e-36 155.6 189 45.0
FAN13G1600 Fragaria x ananassa HOM05D006586 ORTHO05D008254 5.3e-36 155.2 190 44.2
CAN.G1166.29 Capsicum annuum HOM05D006586 ORTHO05D008254 1.5e-35 153.7 188 44.7
Sopen03g031690 Solanum pennellii HOM05D006586 ORTHO05D008254 1.5e-35 153.7 191 45.5
SalBow5G1232 Salvia bowleyana HOM05D006586 ORTHO05D008254 7.6e-35 151.4 193 40.9
SalBow5G1744 Salvia bowleyana HOM05D006586 ORTHO05D008254 7.6e-35 151.4 193 40.9
Nn4g22672 Nelumbo nucifera HOM05D006586 ORTHO05D008254 1.3e-34 150.6 194 42.3
ECA232G2495 Erigeron canadensis HOM05D006586 ORTHO05D000001 1.7e-34 150.2 193 44.0
Sc10g0010150 Simmondsia chinensis HOM05D006586 ORTHO05D008254 1.7e-34 150.2 198 42.9
vmacro19416 Vaccinium macrocarpon HOM05D006586 ORTHO05D008254 3.8e-34 149.1 193 42.0
SGA_v2.0_scaffold25G10812 Striga asiatica HOM05D006586 ORTHO05D008254 6.5e-34 148.3 202 41.1
EL10Ac5g10701 Beta vulgaris HOM05D006586 ORTHO05D008254 8.4e-34 147.9 196 41.8
unitig_22.g6289 Utricularia gibba HOM05D006586 ORTHO05D008254 1.1e-33 147.5 194 42.3
Solyc03g112600.4 Solanum lycopersicum HOM05D006586 ORTHO05D008254 1.4e-33 147.1 187 44.4
Hund09455 Selenicereus undatus HOM05D006586 ORTHO05D008254 2.7e-32 142.9 153 47.1
Ah.02g110650 Amaranthus hybridus HOM05D006586 ORTHO05D008254 7.9e-32 141.4 199 41.7
AUR62028758 Chenopodium quinoa HOM05D006586 ORTHO05D008254 7.9e-32 141.4 152 46.1
Zm00001eb342240 Zea mays HOM05D006586 ORTHO05D008254 1.3e-31 140.6 216 39.4
Os01g0546900 Oryza sativa ssp. japonica HOM05D006586 ORTHO05D008254 1.8e-31 140.2 166 46.4
AUR62008177 Chenopodium quinoa HOM05D006586 ORTHO05D008254 5.1e-31 138.7 152 44.7
HPP92_023397 Vanilla planifolia HOM05D006586 ORTHO05D008254 1.1e-30 137.5 139 50.4
ATR1152G085 Amborella trichopoda HOM05D006586 ORTHO05D008254 1.3e-29 134.0 162 45.7
SEGI_41391 Sequoiadendron giganteum HOM05D006586 ORTHO05D008254 1.4e-28 130.6 240 34.2
SHI17138 Sapria himalayana HOM05D006586 ORTHO05D008254 1.0e-26 124.4 193 37.3
MBI16_g14603_MAGBIO Magnolia biondii HOM05D006586 ORTHO05D008254 3.8e-26 122.5 200 36.0
CDE04G2890 Ceratophyllum demersum HOM05D006586 ORTHO05D008254 8.4e-26 121.3 155 43.2
CSS0037952 Camellia sinensis var. sinensis HOM05D006586 ORTHO05D008254 2.5e-25 119.8 69 72.5
Lalb_Chr11g0070381 Lupinus albus HOM05D006586 ORTHO05D008254 3.1e-20 102.8 58 74.1
CBR_g49886 Chara braunii HOM05D006586 ORTHO05D008254 3.4e-19 99.4 89 55.1
Mapoly0108s0029 Marchantia polymorpha HOM05D006586 ORTHO05D008254 5.9e-19 98.6 121 45.5
PGSC0003DMG400018168 Solanum tuberosum HOM05D006586 ORTHO05D008254 1.4e-17 94.0 58 72.4
SMO141G0010 Selaginella moellendorffii HOM05D006586 ORTHO05D008254 1.4e-15 87.4 57 68.4
MBI16_g23863_MAGBIO Magnolia biondii HOM05D006586 ORTHO05D008254 3.0e-15 86.3 55 67.3
arahy.Tifrunner.gnm1.ann1.1D5X8L Arachis hypogaea HOM05D006586 ORTHO05D008254 9.1e-12 74.7 120 39.2
Peaxi162Scf00089g01633 Petunia axillaris HOM05D006586 ORTHO05D008254 5.5e-09 65.5 38 73.7
Cre03.g177007 Chlamydomonas reinhardtii HOM05D006586 ORTHO05D008254 1.8e-07 60.5 61 45.9


User provided reference genes

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