Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG11G3730 Aethionema arabicum HOM05D005740 ORTHO05D007085 1.3e-171 606.3 309 100.0
Thhalv10004495m.g Eutrema salsugineum HOM05D005740 ORTHO05D007085 5.2e-136 488.0 315 82.2
Sp2g22850 Schrenkiella parvula HOM05D005740 ORTHO05D007085 4.9e-134 481.5 317 81.1
Carub.0006s2231 Capsella rubella HOM05D005740 ORTHO05D007085 7.8e-132 474.2 313 80.2
AL6G36080 Arabidopsis lyrata HOM05D005740 ORTHO05D007085 6.6e-131 471.1 315 80.6
BcaNung01238 Brassica carinata HOM05D005740 ORTHO05D007085 1.1e-128 463.8 313 79.9
CARHR188930 Cardamine hirsuta HOM05D005740 ORTHO05D007085 1.1e-128 463.8 315 81.0
BraA09t36289Z Brassica rapa HOM05D005740 ORTHO05D007085 2.4e-128 462.6 312 79.5
AT5G24490 Arabidopsis thaliana HOM05D005740 ORTHO05D007085 1.2e-127 460.3 315 79.4
C09p07180 Brassica napus HOM05D005740 ORTHO05D007085 9.9e-127 457.2 314 78.0
A09p06460 Brassica napus HOM05D005740 ORTHO05D007085 1.7e-126 456.4 313 78.6
BcaC04g23547 Brassica carinata HOM05D005740 ORTHO05D007085 2.2e-126 456.1 314 77.7
THA.LOC104798985 Tarenaya hassleriana HOM05D005740 ORTHO05D007085 1.2e-119 433.7 316 74.4
BcaB04g19814 Brassica carinata HOM05D005740 ORTHO05D007085 2.0e-119 433.0 309 75.4
Duzib205G0029 Durio zibethinus HOM05D005740 ORTHO05D007085 4.5e-103 378.6 314 67.2
Thecc.03G208700 Theobroma cacao HOM05D005740 ORTHO05D007085 1.3e-102 377.1 324 65.7
Manes.05G197600 Manihot esculenta HOM05D005740 ORTHO05D007085 3.8e-102 375.6 313 66.8
arahy.Tifrunner.gnm1.ann1.2GB72X Arachis hypogaea HOM05D005740 ORTHO05D007085 3.5e-100 369.0 302 66.2
arahy.Tifrunner.gnm1.ann1.88XX4I Arachis hypogaea HOM05D005740 ORTHO05D007085 6.0e-100 368.2 302 65.9
Gohir.D08G116100 Gossypium hirsutum HOM05D005740 ORTHO05D007085 1.0e-99 367.5 324 64.5
TWI23G0506 Tripterygium wilfordii HOM05D005740 ORTHO05D007085 1.0e-99 367.5 315 64.1
Gorai.004G125000 Gossypium raimondii HOM05D005740 ORTHO05D007085 1.3e-99 367.1 316 64.9
Glyma.06G136500 Glycine max HOM05D005740 ORTHO05D007085 3.9e-99 365.5 303 66.7
COL.COLO4_14370 Corchorus olitorius HOM05D005740 ORTHO05D007085 1.1e-98 364.0 264 71.6
Phvul.009G045100 Phaseolus vulgaris HOM05D005740 ORTHO05D007085 6.2e-97 358.2 304 65.5
Glyma.04G228400 Glycine max HOM05D005740 ORTHO05D007085 8.2e-97 357.8 303 66.7
Cpa.g.sc3.153 Carica papaya HOM05D005740 ORTHO05D007085 1.1e-96 357.5 317 62.1
Ciclev10021260m.g Citrus clementina HOM05D005740 ORTHO05D007085 1.2e-95 354.0 233 77.3
ClCG02G000010 Citrullus lanatus HOM05D005740 ORTHO05D007085 1.5e-95 353.6 238 75.6
Cfa016160 Carpinus fangiana HOM05D005740 ORTHO05D007085 2.6e-95 352.8 287 64.8
Potri.012G005800 Populus trichocarpa HOM05D005740 ORTHO05D007085 2.6e-95 352.8 314 63.1
CiPaw.05G205100 Carya illinoinensis HOM05D005740 ORTHO05D007085 1.0e-94 350.9 311 60.8
Haze_00297 Corylus avellana HOM05D005740 ORTHO05D007085 1.3e-94 350.5 280 64.6
MD07G1298900 Malus domestica HOM05D005740 ORTHO05D007085 1.3e-94 350.5 244 72.5
BcaC09g52277 Brassica carinata HOM05D005740 ORTHO05D007085 1.7e-94 350.1 227 79.7
Lalb_Chr08g0239611 Lupinus albus HOM05D005740 ORTHO05D007085 3.8e-94 349.0 232 75.9
Eucgr.A01406 Eucalyptus grandis HOM05D005740 ORTHO05D007085 1.1e-93 347.4 286 66.1
QL09p007195 Quercus lobata HOM05D005740 ORTHO05D007085 1.1e-93 347.4 232 72.4
Sed0000166 Sechium edule HOM05D005740 ORTHO05D007085 1.1e-93 347.4 314 63.4
Potri.015G002200 Populus trichocarpa HOM05D005740 ORTHO05D007085 1.9e-93 346.7 294 62.6
VMungo1309G0132 Vigna mungo HOM05D005740 ORTHO05D007085 5.5e-93 345.1 305 64.3
Sabra15G0001400 Salix brachista HOM05D005740 ORTHO05D007085 6.1e-92 341.7 313 59.4
GSVIVG01038643001 Vitis vinifera HOM05D005740 ORTHO05D007085 7.9e-92 341.3 236 73.7
CsaV3_2G019690 Cucumis sativus L. HOM05D005740 ORTHO05D007085 1.3e-91 340.5 242 71.1
Nn3g18795 Nelumbo nucifera HOM05D005740 ORTHO05D007085 1.3e-91 340.5 298 62.8
BcaC09g49688 Brassica carinata HOM05D005740 ORTHO05D007085 2.3e-91 339.7 304 66.1
Lj1g0025829 Lotus japonicus HOM05D005740 ORTHO05D007085 3.0e-91 339.3 287 64.5
MSTRG.26978 Avicennia marina HOM05D005740 ORTHO05D007085 5.1e-91 338.6 304 62.2
Prupe.2G318800 Prunus persica HOM05D005740 ORTHO05D007085 5.1e-91 338.6 323 61.3
HanXRQChr04g0105951 Helianthus annuus HOM05D005740 ORTHO05D007085 8.7e-91 337.8 288 62.5
AUR62035622 Chenopodium quinoa HOM05D005740 ORTHO05D007085 1.9e-90 336.7 258 68.2
Medtr3g092720 Medicago truncatula HOM05D005740 ORTHO05D007085 1.9e-90 336.7 312 59.9
PGR042G0341 Punica granatum HOM05D005740 ORTHO05D007085 3.3e-90 335.9 305 60.0
MBI12_g14495_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 5.7e-90 335.1 234 71.8
Ah.07g204700 Amaranthus hybridus HOM05D005740 ORTHO05D007085 7.4e-90 334.7 241 69.3
CSS0042637 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 9.7e-90 334.3 311 60.5
Ca_16779_v3 Cicer arietinum L. HOM05D005740 ORTHO05D007085 9.7e-90 334.3 235 71.1
ECA232G2160 Erigeron canadensis HOM05D005740 ORTHO05D007085 1.3e-89 334.0 229 71.2
SalBow6G1442 Salvia bowleyana HOM05D005740 ORTHO05D007085 2.2e-89 333.2 310 61.0
Psat5g072000 Pisum sativum HOM05D005740 ORTHO05D007085 2.8e-89 332.8 226 71.2
FAN03G0834 Fragaria x ananassa HOM05D005740 ORTHO05D007085 3.7e-89 332.4 238 69.7
PGSC0003DMG400027021 Solanum tuberosum HOM05D005740 ORTHO05D007085 3.7e-89 332.4 310 58.7
Nitab4.5_0000115g0060 Nicotiana tabacum HOM05D005740 ORTHO05D007085 4.8e-89 332.0 248 69.4
FAN10G2230 Fragaria x ananassa HOM05D005740 ORTHO05D007085 1.1e-88 330.9 248 67.7
Gohir.A08G104500 Gossypium hirsutum HOM05D005740 ORTHO05D007085 1.1e-88 330.9 322 60.9
Sc13g0010280 Simmondsia chinensis HOM05D005740 ORTHO05D007085 1.1e-88 330.9 293 58.4
FAN01G0684 Fragaria x ananassa HOM05D005740 ORTHO05D007085 1.4e-88 330.5 248 67.7
Sopen06g029440 Solanum pennellii HOM05D005740 ORTHO05D007085 1.4e-88 330.5 308 59.4
CDE05G3242 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 1.8e-88 330.1 314 57.3
CSS0030523 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 2.4e-88 329.7 311 59.8
unitig_748.g7278 Utricularia gibba HOM05D005740 ORTHO05D007085 2.4e-88 329.7 297 58.6
Lsat_1_v5_gn_9_50040 Lactuca sativa HOM05D005740 ORTHO05D007085 3.1e-88 329.3 244 68.0
DCAR_020372 Daucus carota HOM05D005740 ORTHO05D007085 4.1e-88 328.9 313 58.8
EL10Ac3g05180 Beta vulgaris HOM05D005740 ORTHO05D007085 5.3e-88 328.6 261 65.5
CANSAT21G1962 Cannabis sativa HOM05D005740 ORTHO05D007085 5.3e-88 328.6 320 60.0
Solyc06g073090.3 Solanum lycopersicum HOM05D005740 ORTHO05D007085 5.3e-88 328.6 300 59.7
ATR1155G047 Amborella trichopoda HOM05D005740 ORTHO05D007085 3.4e-87 325.9 231 70.1
FvH4_7g32900 Fragaria vesca HOM05D005740 ORTHO05D007085 3.4e-87 325.9 248 67.7
CDE02G4511 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 1.7e-86 323.6 305 57.7
Nitab4.5_0002895g0020 Nicotiana tabacum HOM05D005740 ORTHO05D007085 1.7e-86 323.6 250 68.0
Migut.F00153 Erythranthe guttata HOM05D005740 ORTHO05D007085 2.9e-86 322.8 285 59.3
C01p22900 Brassica napus HOM05D005740 ORTHO05D007085 1.9e-85 320.1 227 74.0
C01p22870 Brassica napus HOM05D005740 ORTHO05D007085 3.2e-85 319.3 227 74.4
SGA_v2.0_scaffold18G08464 Striga asiatica HOM05D005740 ORTHO05D007085 3.2e-85 319.3 307 57.3
RcHm_v2.0_Chr1g0382861 Rosa chinensis HOM05D005740 ORTHO05D007085 5.5e-85 318.5 298 59.7
TAR375G0796 Trochodendron aralioides HOM05D005740 ORTHO05D007085 7.2e-85 318.2 314 58.3
BcaC09g52279 Brassica carinata HOM05D005740 ORTHO05D007085 6.1e-84 315.1 201 79.1
PSO063G0961 Papaver somniferum HOM05D005740 ORTHO05D007085 7.9e-84 314.7 236 68.2
PSO782G4352 Papaver somniferum HOM05D005740 ORTHO05D007085 7.9e-84 314.7 273 60.1
Migut.F00988 Erythranthe guttata HOM05D005740 ORTHO05D007085 2.3e-83 313.2 223 67.7
Actinidia34269 Actinidia chinensis HOM05D005740 ORTHO05D007085 5.1e-83 312.0 241 63.9
HPP92_015050 Vanilla planifolia HOM05D005740 ORTHO05D007085 8.8e-83 311.2 270 60.0
Actinidia28282 Actinidia chinensis HOM05D005740 ORTHO05D007085 1.3e-81 307.4 247 65.6
Peaxi162Scf00618g00020 Petunia axillaris HOM05D005740 ORTHO05D007085 3.7e-81 305.8 264 61.7
Aqoxy7G02158 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 1.8e-80 303.5 273 62.3
MELO3C023190.2 Cucumis melo HOM05D005740 ORTHO05D007085 1.2e-79 300.8 220 70.0
AUR62006005 Chenopodium quinoa HOM05D005740 ORTHO05D007085 2.0e-79 300.1 221 69.2
Rhsim03G0215400 Rhododendron simsii HOM05D005740 ORTHO05D007085 1.3e-78 297.4 309 53.7
A06p35310 Brassica napus HOM05D005740 ORTHO05D007085 6.5e-78 295.0 246 65.4
BraA06t26457Z Brassica rapa HOM05D005740 ORTHO05D007085 6.5e-78 295.0 209 73.7
Lj3A895G46 Lonicera japonica HOM05D005740 ORTHO05D007085 3.2e-77 292.7 252 61.1
vmacro22782 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 7.2e-77 291.6 307 52.8
TPR.G33623 Trifolium pratense HOM05D005740 ORTHO05D007085 1.2e-76 290.8 270 59.3
vmacro06441 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 1.6e-76 290.4 314 52.5
C01p22930 Brassica napus HOM05D005740 ORTHO05D007085 2.3e-75 286.6 203 73.4
Hund09713 Selenicereus undatus HOM05D005740 ORTHO05D007085 1.7e-73 280.4 234 59.0
Aqoxy7G02157 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 7.0e-72 275.0 220 64.1
Os03g0856500 Oryza sativa ssp. japonica HOM05D005740 ORTHO05D007085 2.0e-71 273.5 274 54.0
Zm00001eb064950 Zea mays HOM05D005740 ORTHO05D007085 6.5e-70 268.5 256 53.9
AagrBONN_evm.TU.Sc2ySwM_362.2025 Anthoceros agrestis HOM05D005740 ORTHO05D007085 2.0e-63 246.9 253 54.9
Atru.chr12.2428 Acer truncatum HOM05D005740 ORTHO05D007085 1.7e-62 243.8 233 60.5
CBR_g44535 Chara braunii HOM05D005740 ORTHO05D007085 3.8e-62 242.7 235 53.2
Pp3c18_22260 Physcomitrium patens HOM05D005740 ORTHO05D007085 6.5e-62 241.9 286 50.7
Pp3c21_1350 Physcomitrium patens HOM05D005740 ORTHO05D007085 1.9e-61 240.4 252 53.6
Mapoly0136s0019 Marchantia polymorpha HOM05D005740 ORTHO05D007085 4.2e-61 239.2 299 44.1
SMO145G0182 Selaginella moellendorffii HOM05D005740 ORTHO05D007085 6.8e-59 231.9 217 53.5
Dinv29211 Davidia involucrata HOM05D005740 ORTHO05D007085 3.1e-56 223.0 237 57.4
CAN.G65.152 Capsicum annuum HOM05D005740 ORTHO05D007085 2.0e-55 220.3 161 69.6
FAN10G1912 Fragaria x ananassa HOM05D005740 ORTHO05D007085 7.2e-53 211.8 169 63.9
Potri.012G026375 Populus trichocarpa HOM05D005740 ORTHO05D007085 2.1e-52 210.3 172 65.1
Actinidia08698 Actinidia chinensis HOM05D005740 ORTHO05D007085 4.7e-52 209.1 207 56.0
C01p22950 Brassica napus HOM05D005740 ORTHO05D007085 3.0e-43 179.9 146 65.8
Potri.012G009001 Populus trichocarpa HOM05D005740 ORTHO05D007085 3.7e-33 146.4 123 64.2
Cre05.g237450 Chlamydomonas reinhardtii HOM05D005740 ORTHO05D007085 6.4e-33 145.6 234 38.9
MCO12G039 Micromonas commoda HOM05D005740 ORTHO05D007085 1.4e-32 144.4 271 38.0
Potri.011G055100 Populus trichocarpa HOM05D005740 ORTHO05D007085 5.0e-30 136.0 191 46.1
BolC1t02230H Brassica oleracea HOM05D005740 ORTHO05D007085 4.4e-26 122.9 63 92.1
PRCOL_00006097 Prasinoderma coloniale HOM05D005740 ORTHO05D007085 9.8e-26 121.7 209 31.1
CAN.G65.153 Capsicum annuum HOM05D000273 ORTHO05D000198 2.1e-20 104.0 67 70.1
C01p22940 Brassica napus HOM05D005740 ORTHO05D007085 2.4e-16 90.5 47 91.5
Potri.011G054700 Populus trichocarpa HOM05D005740 ORTHO05D007085 9.2e-16 88.6 87 52.9
C01p22960 Brassica napus HOM05D017401 ORTHO05D020044 7.8e-15 85.5 123 53.7
Sabra12G0002000 Salix brachista HOM05D000053 ORTHO05D000035 1.7e-14 84.3 81 60.5
Sabra12G0002700 Salix brachista HOM05D005740 ORTHO05D000035 1.5e-13 81.3 77 59.7
MBI08_g17822_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 1.2e-12 78.2 46 80.4
Sabra12G0007800 Salix brachista HOM05D000053 ORTHO05D000035 8.9e-11 72.0 48 72.9
Sabra12G0002200 Salix brachista HOM05D005740 ORTHO05D007085 3.4e-10 70.1 70 58.6
Sabra12G0002900 Salix brachista HOM05D005740 ORTHO05D007085 4.4e-10 69.7 45 77.8
Pp3c3_26240 Physcomitrium patens HOM05D005740 ORTHO05D007085 3.0e-06 57.0 50 54.0


User provided reference genes

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