Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG10G16290 Aethionema arabicum HOM05D005254 ORTHO05D007557 0.0e+00 2374.4 1192 100.0
AL5G45120 Arabidopsis lyrata HOM05D005254 ORTHO05D007557 0.0e+00 2088.9 1197 87.0
Sp5g01040 Schrenkiella parvula HOM05D005254 ORTHO05D007557 0.0e+00 2078.5 1198 86.0
AT3G62360 Arabidopsis thaliana HOM05D005254 ORTHO05D007557 0.0e+00 2072.0 1199 86.2
CARHR172690 Cardamine hirsuta HOM05D005254 ORTHO05D007557 0.0e+00 2062.7 1198 85.8
Thhalv10005752m.g Eutrema salsugineum HOM05D005254 ORTHO05D007557 0.0e+00 2061.6 1188 86.1
Carub.0005s2908 Capsella rubella HOM05D005254 ORTHO05D007557 0.0e+00 2046.9 1200 85.2
A09p54350 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 2034.6 1198 84.3
C08p37230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 2030.4 1198 83.8
BraA09t40847Z Brassica rapa HOM05D005254 ORTHO05D007557 0.0e+00 2026.5 1208 83.8
BolC8t51301H Brassica oleracea HOM05D005254 ORTHO05D007557 0.0e+00 2021.1 1222 82.5
BcaC07g40720 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1953.3 1198 81.9
THA.LOC104802150 Tarenaya hassleriana HOM05D005254 ORTHO05D007557 0.0e+00 1886.3 1206 77.9
BcaC07g40722 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1669.8 1205 73.5
Atru.chr5.974 Acer truncatum HOM05D005254 ORTHO05D007557 0.0e+00 1661.4 1202 67.7
FvH4_1g27060 Fragaria vesca HOM05D005254 ORTHO05D007557 0.0e+00 1659.4 1198 67.7
RcHm_v2.0_Chr3g0487381 Rosa chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1659.4 1197 67.7
FAN19G0333 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1654.8 1198 67.6
Manes.05G014200 Manihot esculenta HOM05D005254 ORTHO05D007557 0.0e+00 1653.6 1202 67.9
Thecc.01G315800 Theobroma cacao HOM05D005254 ORTHO05D007557 0.0e+00 1652.9 1199 67.6
Duzib133G0392 Durio zibethinus HOM05D005254 ORTHO05D007557 0.0e+00 1651.3 1198 67.0
FAN26G2945 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1649.4 1198 67.4
CiPaw.07G119100 Carya illinoinensis HOM05D005254 ORTHO05D007557 0.0e+00 1647.5 1201 66.4
Potri.002G194000 Populus trichocarpa HOM05D005254 ORTHO05D007557 0.0e+00 1645.9 1195 67.6
GSVIVG01028140001 Vitis vinifera HOM05D005254 ORTHO05D007557 0.0e+00 1645.9 1206 67.3
MD17G1277500 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1642.1 1195 66.9
COL.COLO4_23211 Corchorus olitorius HOM05D005254 ORTHO05D007557 0.0e+00 1640.6 1238 65.8
MD09G1284300 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1640.6 1191 66.8
Ciclev10018561m.g Citrus clementina HOM05D005254 ORTHO05D007557 0.0e+00 1638.6 1198 67.0
Gorai.004G144800 Gossypium raimondii HOM05D005254 ORTHO05D007557 0.0e+00 1635.2 1197 66.8
Gohir.D08G140700 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1628.6 1197 66.5
Cfa005773 Carpinus fangiana HOM05D005254 ORTHO05D007557 0.0e+00 1624.0 1172 67.5
QL12p019422 Quercus lobata HOM05D005254 ORTHO05D007557 0.0e+00 1615.1 1194 65.9
CANSAT25G1517 Cannabis sativa HOM05D005254 ORTHO05D007557 0.0e+00 1614.0 1202 66.2
Gohir.A08G119800 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1612.0 1197 65.7
TWI36G0433 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 0.0e+00 1611.3 1205 65.6
C06p28230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1608.6 1208 70.6
Dinv10118 Davidia involucrata HOM05D005254 ORTHO05D007557 0.0e+00 1606.3 1197 65.7
TAR633G1480 Trochodendron aralioides HOM05D005254 ORTHO05D007557 0.0e+00 1596.6 1195 65.8
PGR083G2196 Punica granatum HOM05D005254 ORTHO05D007557 0.0e+00 1596.3 1197 65.2
Actinidia25861 Actinidia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1594.7 1193 65.5
Eucgr.H00999 Eucalyptus grandis HOM05D005254 ORTHO05D007557 0.0e+00 1583.9 1203 63.8
CSS0038291 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1575.1 1195 64.4
Rhsim01G0292000 Rhododendron simsii HOM05D005254 ORTHO05D007557 0.0e+00 1570.4 1199 64.3
Hma1.2p1_0486F.1_g163430 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1568.1 1194 64.4
Glyma.19G217500 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1563.9 1192 64.0
Lalb_Chr04g0260001 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1563.5 1203 64.3
Sabra02G0162400 Salix brachista HOM05D005254 ORTHO05D007557 0.0e+00 1563.1 1309 61.0
Psat0s425g0240 Pisum sativum HOM05D005254 ORTHO05D007557 0.0e+00 1559.3 1191 63.2
Sc17g0000380 Simmondsia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1557.0 1195 62.8
CsaV3_7G030070 Cucumis sativus L. HOM05D005254 ORTHO05D007557 0.0e+00 1555.8 1195 63.3
Ca_09219_v3 Cicer arietinum L. HOM05D005254 ORTHO05D007557 0.0e+00 1554.3 1219 62.8
arahy.Tifrunner.gnm1.ann1.AYF5PU Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1552.7 1214 62.6
Medtr7g109730 Medicago truncatula HOM05D005254 ORTHO05D007557 0.0e+00 1552.3 1193 63.5
Lalb_Chr15g0078051 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1551.6 1203 62.8
Glyma.03G220700 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1550.8 1192 63.3
Lj1g0000440 Lotus japonicus HOM05D005254 ORTHO05D007557 0.0e+00 1548.1 1191 62.6
Phvul.001G214200 Phaseolus vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1547.3 1193 63.3
VMungo1383G0540 Vigna mungo HOM05D005254 ORTHO05D007557 0.0e+00 1546.9 1193 63.3
TPR.G4086 Trifolium pratense HOM05D005254 ORTHO05D007557 0.0e+00 1545.8 1194 62.6
Hund09648 Selenicereus undatus HOM05D005254 ORTHO05D007557 0.0e+00 1540.0 1205 62.8
Nn3g21729 Nelumbo nucifera HOM05D005254 ORTHO05D007557 0.0e+00 1532.7 1179 63.1
Sed0001136 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1525.8 1198 62.3
ClCG09G004990 Citrullus lanatus HOM05D005254 ORTHO05D007557 0.0e+00 1521.9 1210 62.3
HanXRQChr01g0000761 Helianthus annuus HOM05D005254 ORTHO05D007557 0.0e+00 1520.4 1187 62.8
MBI18_g03638_MAGBIO Magnolia biondii HOM05D005254 ORTHO05D007557 0.0e+00 1520.4 1202 62.0
Migut.N00932 Erythranthe guttata HOM05D005254 ORTHO05D007557 0.0e+00 1515.4 1195 61.8
Sed0015859 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1512.3 1201 61.5
CAN.G1280.35 Capsicum annuum HOM05D005254 ORTHO05D007557 0.0e+00 1503.8 1199 60.6
Peaxi162Scf00058g02631 Petunia axillaris HOM05D005254 ORTHO05D007557 0.0e+00 1503.8 1208 60.3
MELO3C015914.2 Cucumis melo HOM05D005254 ORTHO05D007557 0.0e+00 1503.0 1143 63.9
arahy.Tifrunner.gnm1.ann1.72UXVZ Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1495.7 1194 61.5
Cc01_g21580 Coffea canephora HOM05D005254 ORTHO05D007557 0.0e+00 1492.6 1198 60.1
AUR62043231 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1492.2 1239 59.3
Solyc06g009530.3 Solanum lycopersicum HOM05D005254 ORTHO05D007557 0.0e+00 1485.7 1199 60.1
Ah.02g112410 Amaranthus hybridus HOM05D005254 ORTHO05D007557 0.0e+00 1484.5 1204 60.1
ECA248G2092 Erigeron canadensis HOM05D005254 ORTHO05D007557 0.0e+00 1482.6 1181 61.6
MSTRG.17387 Avicennia marina HOM05D005254 ORTHO05D007557 0.0e+00 1481.1 1178 61.1
Sopen06g004190 Solanum pennellii HOM05D005254 ORTHO05D007557 0.0e+00 1480.7 1199 60.0
Lsat_1_v5_gn_5_191360 Lactuca sativa HOM05D005254 ORTHO05D007557 0.0e+00 1478.8 1158 62.1
SalBow2G1139 Salvia bowleyana HOM05D005254 ORTHO05D007557 0.0e+00 1475.7 1200 60.2
Aqoxy5G02683 Aquilegia oxysepala HOM05D005254 ORTHO05D007557 0.0e+00 1458.0 1209 60.0
DCAR_018280 Daucus carota HOM05D005254 ORTHO05D007557 0.0e+00 1458.0 1202 59.7
PSO170G0810 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1454.1 1196 61.3
Nitab4.5_0000363g0240 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1447.2 1272 56.6
Prupe.3G010500 Prunus persica HOM05D005254 ORTHO05D007557 0.0e+00 1445.3 1014 69.3
EL10As5g23556 Beta vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1444.9 1248 57.5
Nitab4.5_0007407g0050 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1439.5 1155 60.3
PSO357G0205 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1439.1 1196 61.1
ATR0693G194 Amborella trichopoda HOM05D005254 ORTHO05D007557 0.0e+00 1438.7 1178 60.1
CDE01G0437 Ceratophyllum demersum HOM05D005254 ORTHO05D007557 0.0e+00 1427.2 1189 59.3
AUR62032507 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1392.1 1239 56.6
Zm00001eb340350 Zea mays HOM05D005254 ORTHO05D007557 0.0e+00 1360.9 1195 55.6
SGA_v2.0_scaffold6G03340 Striga asiatica HOM05D005254 ORTHO05D007557 0.0e+00 1359.4 1281 54.6
CSS0023845 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1320.8 1018 63.5
HPP92_011729 Vanilla planifolia HOM05D005254 ORTHO05D007557 0.0e+00 1320.8 1192 54.9
SEGI_30263 Sequoiadendron giganteum HOM05D005254 ORTHO05D007557 0.0e+00 1314.3 1204 55.2
BcaC07g42749 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1298.1 822 79.2
Hma1.2p1_0486F.1_g163440 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1243.8 970 63.1
Oeu049924.2 Olea europaea HOM05D005254 ORTHO05D007557 0.0e+00 1234.9 1188 53.8
Lj1C15G16 Lonicera japonica HOM05D005254 ORTHO05D007557 0.0e+00 1228.4 987 62.1
Mapoly0002s0320 Marchantia polymorpha HOM05D005254 ORTHO05D007557 0.0e+00 1161.0 1208 48.3
Pp3c14_26400 Physcomitrium patens HOM05D005254 ORTHO05D007557 0.0e+00 1156.0 1211 49.0
Haze_05067 Corylus avellana HOM05D005254 ORTHO05D007557 0.0e+00 1154.8 1200 52.0
unitig_22.g6696 Utricularia gibba HOM05D005254 ORTHO05D007557 0.0e+00 1139.8 1213 49.7
SMO145G0116 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 0.0e+00 1120.1 1167 48.2
FAN23G1174 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1119.0 834 65.5
FAN28G1559 Fragaria x ananassa HOM05D005254 ORTHO05D007557 2.4e-298 1029.2 856 62.0
BcaC08g45197 Brassica carinata HOM05D005254 ORTHO05D007557 5.4e-290 1001.5 590 84.1
Cpa.g.sc18.77 Carica papaya HOM05D005254 ORTHO05D007557 1.9e-266 923.3 712 65.3
AagrBONN_evm.TU.Sc2ySwM_344.3074 Anthoceros agrestis HOM05D005254 ORTHO05D007557 7.7e-252 874.8 1070 43.7
vmacro15104 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 9.7e-239 831.2 718 58.8
CBR_g12556 Chara braunii HOM05D005254 ORTHO05D007557 9.1e-237 824.7 1100 42.6
Actinidia20982 Actinidia chinensis HOM05D005254 ORTHO05D007557 1.2e-212 744.6 1168 39.7
Migut.O00532 Erythranthe guttata HOM05D005254 ORTHO05D007557 1.4e-197 694.5 485 67.4
BcaC08g45196 Brassica carinata HOM05D005254 ORTHO05D007557 3.2e-197 693.3 588 65.6
CSS0046339 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 1.6e-196 691.0 559 62.4
vmacro15105 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 2.0e-191 674.1 481 68.0
Oeu031896.1 Olea europaea HOM05D005254 ORTHO05D007557 1.8e-184 651.0 758 48.0
FAN23G1589 Fragaria x ananassa HOM05D005254 ORTHO05D007557 1.6e-140 505.0 400 63.8
BolC6t37993H Brassica oleracea HOM05D005254 ORTHO05D012489 1.5e-135 488.4 368 69.8
Os01g0300600 Oryza sativa ssp. japonica HOM05D005254 ORTHO05D007557 1.7e-134 485.0 412 58.5
SMO145G0011 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 2.1e-116 424.9 716 37.7
Cpa.g.sc18.72 Carica papaya HOM05D005254 ORTHO05D007557 1.5e-98 365.5 257 67.3
Cpa.g.sc18.74 Carica papaya HOM05D005254 ORTHO05D031611 2.3e-78 298.5 280 56.8
SalBow3G0325 Salvia bowleyana HOM05D005254 ORTHO05D007557 1.2e-55 223.0 282 42.9
Lj1A15G51 Lonicera japonica HOM05D005254 ORTHO05D007557 3.0e-54 218.4 176 61.4
LjContig00310g0001105 Lotus japonicus HOM05D005254 ORTHO05D007557 1.4e-51 209.5 190 55.8
SalBow2G0161 Salvia bowleyana HOM05D005254 ORTHO05D355854 7.6e-50 203.8 286 40.9
Psat0s2295g0200 Pisum sativum HOM05D005254 ORTHO05D031611 4.9e-49 201.1 234 47.0
TWI18G0218 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 2.3e-46 192.2 141 66.0
BolC6t37991H Brassica oleracea HOM05D005254 ORTHO05D007557 4.0e-43 181.4 162 62.3
arahy.Tifrunner.gnm1.ann1.4QV716 Arachis hypogaea HOM05D005254 ORTHO05D031611 1.6e-28 132.9 140 51.4
Psat4g159280 Pisum sativum HOM05D000515 ORTHO05D020117 3.8e-17 95.1 72 55.6
SMO145G0128 Selaginella moellendorffii HOM05D005254 ORTHO05D374975 3.9e-14 85.1 322 24.2
CAN.G277.2 Capsicum annuum HOM05D005254 ORTHO05D115212 5.1e-14 84.7 203 31.0
CBR_g12551 Chara braunii HOM05D005254 ORTHO05D131495 1.3e-12 80.1 94 45.7
EL10Ac4g10003 Beta vulgaris HOM05D005254 ORTHO05D007557 1.1e-11 77.0 60 66.7
CAN.G317.3 Capsicum annuum HOM05D005254 ORTHO05D115878 1.7e-09 69.7 94 41.5
Actinidia23681 Actinidia chinensis HOM05D005254 ORTHO05D055336 6.5e-09 67.8 107 39.3
CAN.G2.2 Capsicum annuum HOM05D000004 ORTHO05D000002 1.4e-08 66.6 53 58.5
Actinidia04350 Actinidia chinensis HOM05D002713 ORTHO05D007644 3.2e-08 65.5 59 57.6
Nn8g39934 Nelumbo nucifera HOM05D005254 ORTHO05D278817 2.1e-07 62.8 45 62.2
A09p25680 Brassica napus HOM05D005254 ORTHO05D100756 8.8e-06 57.4 24 95.8


User provided reference genes

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