Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62044023 Chenopodium quinoa HOM05D006162 ORTHO05D007627 5.4e-220 767.3 373 100.0
AUR62017952 Chenopodium quinoa HOM05D006162 ORTHO05D007627 2.6e-174 615.5 371 85.4
AUR62003642 Chenopodium quinoa HOM05D006162 ORTHO05D007627 1.9e-140 503.1 493 58.4
EL10Ac6g15232 Beta vulgaris HOM05D006162 ORTHO05D007627 2.8e-107 392.9 470 50.6
Ah.02g123760 Amaranthus hybridus HOM05D006162 ORTHO05D007627 4.3e-92 342.4 438 48.6
Hund19624 Selenicereus undatus HOM05D006162 ORTHO05D007627 1.2e-81 307.8 461 43.6
Thecc.07G145700 Theobroma cacao HOM05D006162 ORTHO05D007627 1.5e-49 201.1 486 31.9
Cfa002788 Carpinus fangiana HOM05D006162 ORTHO05D007627 5.0e-48 196.1 489 32.3
Sc16g0004090 Simmondsia chinensis HOM05D006162 ORTHO05D007627 3.2e-47 193.4 284 39.8
Nitab4.5_0007426g0010 Nicotiana tabacum HOM05D006162 ORTHO05D007627 4.2e-47 193.0 478 30.8
Aqoxy6G00404 Aquilegia oxysepala HOM05D006162 ORTHO05D007627 2.7e-46 190.3 493 29.8
Manes.12G145600 Manihot esculenta HOM05D006162 ORTHO05D007627 3.9e-45 186.4 472 32.2
QL06p031367 Quercus lobata HOM05D006162 ORTHO05D007627 8.8e-45 185.3 486 31.5
FAN28G1724 Fragaria x ananassa HOM05D006162 ORTHO05D007627 2.5e-44 183.7 459 30.7
ECA238G0813 Erigeron canadensis HOM05D006162 ORTHO05D007627 1.3e-43 181.4 468 30.1
MD01G1015800 Malus domestica HOM05D006162 ORTHO05D007627 1.3e-43 181.4 463 30.9
FAN23G1837 Fragaria x ananassa HOM05D006162 ORTHO05D007627 1.7e-43 181.0 457 30.4
Nitab4.5_0000184g0020 Nicotiana tabacum HOM05D006162 ORTHO05D007627 1.7e-43 181.0 486 30.2
THA.LOC104824832 Tarenaya hassleriana HOM05D006162 ORTHO05D007627 3.1e-42 176.8 466 29.0
TAR625G0476 Trochodendron aralioides HOM05D006162 ORTHO05D007627 3.1e-42 176.8 499 29.7
COL.COLO4_17421 Corchorus olitorius HOM05D000398 ORTHO05D007627 6.9e-42 175.6 483 29.4
Gohir.A13G151700 Gossypium hirsutum HOM05D006162 ORTHO05D007627 6.9e-42 175.6 308 36.7
Gorai.013G176700 Gossypium raimondii HOM05D006162 ORTHO05D007627 9.1e-42 175.3 308 36.7
Ciclev10025253m.g Citrus clementina HOM05D006162 ORTHO05D007627 1.2e-41 174.9 495 29.7
Dinv05774 Davidia involucrata HOM05D006162 ORTHO05D007627 1.2e-41 174.9 493 28.4
Gohir.D13G156100 Gossypium hirsutum HOM05D006162 ORTHO05D007627 1.5e-41 174.5 308 37.3
Lsat_1_v5_gn_2_67341 Lactuca sativa HOM05D006162 ORTHO05D007627 2.0e-41 174.1 472 29.7
CSS0015273 Camellia sinensis var. sinensis HOM05D006162 ORTHO05D007627 2.6e-41 173.7 423 31.7
Medtr8g092350 Medicago truncatula HOM05D006162 ORTHO05D007627 3.4e-41 173.3 485 28.9
TWI79G1464 Tripterygium wilfordii HOM05D006162 ORTHO05D007627 4.5e-41 172.9 492 29.5
Duzib187G0444 Durio zibethinus HOM05D006162 ORTHO05D007627 5.9e-41 172.6 303 35.6
HanXRQChr14g0446061 Helianthus annuus HOM05D006162 ORTHO05D007627 1.0e-40 171.8 464 30.2
VMungo0251G2144 Vigna mungo HOM05D006162 ORTHO05D007627 1.3e-40 171.4 490 30.0
Potri.007G077100 Populus trichocarpa HOM05D006162 ORTHO05D007627 1.7e-40 171.0 464 31.2
TPR.G2184 Trifolium pratense HOM05D006162 ORTHO05D007627 2.9e-40 170.2 486 29.2
Phvul.002G267600 Phaseolus vulgaris HOM05D006162 ORTHO05D007627 3.8e-40 169.9 490 30.2
SGA_v2.0_scaffold2G01268 Striga asiatica HOM05D006162 ORTHO05D007627 3.8e-40 169.9 457 29.8
Peaxi162Scf00025g03226 Petunia axillaris HOM05D006162 ORTHO05D007627 1.1e-39 168.3 321 36.8
Ca_17673_v3 Cicer arietinum L. HOM05D006162 ORTHO05D007627 1.4e-39 167.9 478 29.7
Haze_25085 Corylus avellana HOM05D006162 ORTHO05D007627 1.4e-39 167.9 561 27.5
RcHm_v2.0_Chr2g0118111 Rosa chinensis HOM05D006162 ORTHO05D007627 1.4e-39 167.9 496 29.6
Glyma.08G145100 Glycine max HOM05D006162 ORTHO05D007627 1.9e-39 167.5 490 28.8
Oeu001984.1 Olea europaea HOM05D006162 ORTHO05D007627 1.9e-39 167.5 290 35.5
MBI17_g27203_MAGBIO Magnolia biondii HOM05D006162 ORTHO05D007627 3.2e-39 166.8 492 27.0
GSVIVG01022265001 Vitis vinifera HOM05D006162 ORTHO05D007627 3.2e-39 166.8 492 28.9
arahy.Tifrunner.gnm1.ann1.QP02N2 Arachis hypogaea HOM05D006162 ORTHO05D007627 4.2e-39 166.4 471 29.5
Migut.H02454 Erythranthe guttata HOM05D006162 ORTHO05D007627 5.5e-39 166.0 471 28.7
Eucgr.H04890 Eucalyptus grandis HOM05D006162 ORTHO05D007627 5.5e-39 166.0 518 29.2
CAN.G452.13 Capsicum annuum HOM05D006162 ORTHO05D007627 1.2e-38 164.9 490 28.0
Glyma.05G186500 Glycine max HOM05D006162 ORTHO05D007627 1.2e-38 164.9 493 29.0
Cc07_g16680 Coffea canephora HOM05D006162 ORTHO05D007627 2.1e-38 164.1 497 29.0
ClCG02G000880 Citrullus lanatus HOM05D006162 ORTHO05D007627 2.7e-38 163.7 489 29.2
Rhsim08G0004700 Rhododendron simsii HOM05D006162 ORTHO05D007627 3.6e-38 163.3 305 34.4
Sed0011946 Sechium edule HOM05D006162 ORTHO05D007627 3.6e-38 163.3 494 30.0
arahy.Tifrunner.gnm1.ann1.2PK97N Arachis hypogaea HOM05D006162 ORTHO05D007627 1.8e-37 161.0 486 29.4
Sopen04g022820 Solanum pennellii HOM05D006162 ORTHO05D007627 2.3e-37 160.6 485 28.9
Prupe.6G165900 Prunus persica HOM05D006162 ORTHO05D007627 3.9e-37 159.8 479 30.1
Sp7g36490 Schrenkiella parvula HOM05D006162 ORTHO05D007627 8.8e-37 158.7 464 28.9
Lj4g0017392 Lotus japonicus HOM05D006162 ORTHO05D007627 1.5e-36 157.9 490 28.8
Nn5g27123 Nelumbo nucifera HOM05D006162 ORTHO05D007627 3.3e-36 156.8 474 30.4
CiPaw.03G131500 Carya illinoinensis HOM05D006162 ORTHO05D007627 7.4e-36 155.6 438 31.5
Psat7g049400 Pisum sativum HOM05D006162 ORTHO05D007627 2.8e-35 153.7 484 27.5
BcaC01g00286 Brassica carinata HOM05D006162 ORTHO05D007627 4.8e-35 152.9 276 36.2
C03p77810 Brassica napus HOM05D006162 ORTHO05D007627 4.8e-35 152.9 276 36.2
BolC3t20037H Brassica oleracea HOM05D006162 ORTHO05D007627 1.4e-34 151.4 284 35.6
CsaV3_2G017830 Cucumis sativus L. HOM05D006162 ORTHO05D007627 1.4e-34 151.4 522 27.0
Aa31LG6G15910 Aethionema arabicum HOM05D006162 ORTHO05D007627 4.1e-34 149.8 459 28.3
PGSC0003DMG400019694 Solanum tuberosum HOM05D006162 ORTHO05D007627 4.1e-34 149.8 305 33.8
BcaB03g12289 Brassica carinata HOM05D006162 ORTHO05D007627 5.3e-34 149.4 464 28.7
CDE08G0720 Ceratophyllum demersum HOM05D006162 ORTHO05D007627 7.0e-34 149.1 314 32.8
AT4G39370 Arabidopsis thaliana HOM05D006162 ORTHO05D007627 2.6e-33 147.1 462 28.1
A08p23610 Brassica napus HOM05D006162 ORTHO05D007627 2.6e-33 147.1 276 34.4
BraA08t34318Z Brassica rapa HOM05D006162 ORTHO05D007627 5.9e-33 146.0 276 34.4
Carub.0007s0129 Capsella rubella HOM05D006162 ORTHO05D007627 1.0e-32 145.2 464 27.6
Atru.chr4.715 Acer truncatum HOM05D006162 ORTHO05D007627 3.8e-32 143.3 224 39.3
FAN26G3317 Fragaria x ananassa HOM05D006162 ORTHO05D007627 3.8e-32 143.3 282 37.2
Thhalv10025021m.g Eutrema salsugineum HOM05D006162 ORTHO05D007627 5.0e-32 142.9 464 26.5
AL7G11390 Arabidopsis lyrata HOM05D006162 ORTHO05D007627 8.5e-32 142.1 465 28.4
unitig_899.g14618 Utricularia gibba HOM05D006162 ORTHO05D007627 1.1e-31 141.7 282 35.8
Solyc04g051410.4 Solanum lycopersicum HOM05D006162 ORTHO05D007627 3.2e-31 140.2 304 32.2
Zm00001eb082910 Zea mays HOM05D006162 ORTHO05D007627 9.4e-31 138.7 457 26.9
PGR102G2965 Punica granatum HOM05D006162 ORTHO05D007627 4.7e-30 136.3 481 26.4
vmacro18055 Vaccinium macrocarpon HOM05D006162 ORTHO05D007627 6.1e-30 136.0 233 38.6
FAN19G1907 Fragaria x ananassa HOM05D006162 ORTHO05D007627 8.0e-30 135.6 226 38.1
Lalb_Chr13g0296301 Lupinus albus HOM05D006162 ORTHO05D007627 8.8e-29 132.1 216 39.8
CANSAT01G0187 Cannabis sativa HOM05D006162 ORTHO05D007627 2.0e-28 131.0 275 34.2
MELO3C020973.2 Cucumis melo HOM05D006162 ORTHO05D007627 5.7e-28 129.4 229 36.2
Lj4A860G2 Lonicera japonica HOM05D006162 ORTHO05D007627 2.2e-27 127.5 426 28.2
ATR0584G096 Amborella trichopoda HOM05D006162 ORTHO05D007627 3.7e-27 126.7 488 25.2
Nitab4.5_0005242g0040 Nicotiana tabacum HOM05D006162 ORTHO05D007627 1.6e-25 121.3 322 29.2
HPP92_009257 Vanilla planifolia HOM05D006162 ORTHO05D007627 3.5e-25 120.2 303 28.4
Sabra07G0065000 Salix brachista HOM05D006162 ORTHO05D007627 4.5e-25 119.8 419 27.4
PSO541G4150 Papaver somniferum HOM05D006162 ORTHO05D007627 1.9e-23 114.4 654 22.2
PSO675G6781 Papaver somniferum HOM05D006162 ORTHO05D007627 3.2e-23 113.6 656 21.8
FvH4_1g23260 Fragaria vesca HOM05D006162 ORTHO05D007627 3.6e-22 110.2 315 27.9
Cpa.g.sc72.51 Carica papaya HOM05D006162 ORTHO05D000563 1.8e-21 107.8 200 40.5
Nn5g27122 Nelumbo nucifera HOM05D006162 ORTHO05D007627 7.0e-18 95.9 80 63.8
DCAR_011464 Daucus carota HOM05D006162 ORTHO05D007627 5.0e-16 89.7 72 61.1
Lj1g0027635 Lotus japonicus HOM05D006162 ORTHO05D007627 1.9e-15 87.8 132 33.3
SEGI_22619 Sequoiadendron giganteum HOM05D006162 ORTHO05D007627 5.5e-15 86.3 610 20.3
SMO340G0295 Selaginella moellendorffii HOM05D006162 ORTHO05D007627 2.7e-14 84.0 391 25.6
Hma1.2p1_0220F.1_g092950 Hydrangea macrophylla HOM05D006162 ORTHO05D007627 1.4e-13 81.6 75 53.3
Lj1g0016947 Lotus japonicus HOM05D006162 ORTHO05D007627 2.3e-13 80.9 136 31.6
Cpa.g.sc72.50 Carica papaya HOM05D006162 ORTHO05D007627 3.0e-13 80.5 230 30.0
Atru.chr4.714 Acer truncatum HOM05D006162 ORTHO05D007627 2.2e-11 74.3 233 27.9
Lalb_Chr13g0296311 Lupinus albus HOM05D006162 ORTHO05D007627 3.7e-11 73.6 230 28.3
arahy.Tifrunner.gnm1.ann1.VC0084 Arachis hypogaea HOM05D000326 ORTHO05D003748 7.0e-10 69.3 65 47.7
DCAR_011465 Daucus carota HOM05D006162 ORTHO05D007627 7.0e-10 69.3 290 26.9
PRCOL_00006193 Prasinoderma coloniale HOM05D000344 ORTHO05D000934 1.2e-09 68.6 241 25.3
arahy.Tifrunner.gnm1.ann1.XAZ91P Arachis hypogaea HOM05D006162 ORTHO05D007627 2.0e-09 67.8 65 46.2
CBR_g28670 Chara braunii HOM05D006162 ORTHO05D007627 3.5e-09 67.0 101 30.7
Oeu049032.1 Olea europaea HOM05D003912 ORTHO05D004409 2.3e-08 64.3 72 48.6
AL4G28230 Arabidopsis lyrata HOM05D003912 ORTHO05D004409 2.9e-08 63.9 75 48.0
Os09g0505100 Oryza sativa ssp. japonica HOM05D003912 ORTHO05D004409 3.8e-08 63.5 75 44.0
Zm00001eb102350 Zea mays HOM05D003912 ORTHO05D004409 5.0e-08 63.2 72 45.8
Duzib212G0883 Durio zibethinus HOM05D003912 ORTHO05D004409 6.6e-08 62.8 77 45.5
HPP92_013626 Vanilla planifolia HOM05D003912 ORTHO05D004409 8.6e-08 62.4 75 46.7
Zm00001eb159190 Zea mays HOM05D006162 ORTHO05D007627 8.6e-08 62.4 77 44.2
SEGI_05196 Sequoiadendron giganteum HOM05D003912 ORTHO05D004409 1.1e-07 62.0 97 46.4
TWI09G1517 Tripterygium wilfordii HOM05D003912 ORTHO05D004409 2.5e-07 60.8 73 43.8
AT2G32780 Arabidopsis thaliana HOM05D003912 ORTHO05D004409 3.3e-07 60.5 75 46.7
CiPaw.01G120700 Carya illinoinensis HOM05D003912 ORTHO05D004409 3.3e-07 60.5 74 45.9
Sabra17G0047100 Salix brachista HOM05D003912 ORTHO05D004409 3.3e-07 60.5 78 43.6
vmacro18056 Vaccinium macrocarpon HOM05D006162 ORTHO05D007627 3.3e-07 60.5 255 23.9
Aqoxy2G03850 Aquilegia oxysepala HOM05D003912 ORTHO05D004409 4.2e-07 60.1 193 27.5
Manes.15G054100 Manihot esculenta HOM05D003912 ORTHO05D004409 4.2e-07 60.1 76 46.1
THA.LOC104826119 Tarenaya hassleriana HOM05D003912 ORTHO05D004409 4.2e-07 60.1 75 49.3
EL10Ac1g01993 Beta vulgaris HOM05D003912 ORTHO05D004409 5.5e-07 59.7 74 37.8
Cc03_g07890 Coffea canephora HOM05D003912 ORTHO05D004409 5.5e-07 59.7 76 46.1
Hma1.2p1_1688F.1_g297590 Hydrangea macrophylla HOM05D006162 ORTHO05D007627 5.5e-07 59.7 40 55.0
Pp3c19_20640 Physcomitrium patens HOM05D003912 ORTHO05D004409 5.5e-07 59.7 72 41.7
EL10Ac2g03910 Beta vulgaris HOM05D003912 ORTHO05D004409 7.2e-07 59.3 75 37.3
Eucgr.H02776 Eucalyptus grandis HOM05D003912 ORTHO05D004409 7.2e-07 59.3 74 43.2
Gohir.D02G124000 Gossypium hirsutum HOM05D003912 ORTHO05D004409 7.2e-07 59.3 78 47.4
Gorai.005G130100 Gossypium raimondii HOM05D003912 ORTHO05D004409 7.2e-07 59.3 78 47.4
Oeu055784.1 Olea europaea HOM05D003912 ORTHO05D004409 7.2e-07 59.3 71 42.3
Psat5g101840 Pisum sativum HOM05D003912 ORTHO05D004409 7.2e-07 59.3 72 43.1
Lj6C552G3 Lonicera japonica HOM05D003912 ORTHO05D004409 9.5e-07 58.9 73 46.6
Thecc.04G203100 Theobroma cacao HOM05D003912 ORTHO05D004409 9.5e-07 58.9 78 46.2
TWI09G0574 Tripterygium wilfordii HOM05D003912 ORTHO05D004409 9.5e-07 58.9 73 42.5
Carub.0004s1415 Capsella rubella HOM05D003912 ORTHO05D004409 1.2e-06 58.5 74 41.9
Thhalv10002775m.g Eutrema salsugineum HOM05D000344 ORTHO05D003292 1.2e-06 58.5 210 27.1
MSTRG.4227 Avicennia marina HOM05D003912 ORTHO05D004409 1.6e-06 58.2 73 49.3
BolC4t23225H Brassica oleracea HOM05D003912 ORTHO05D004409 2.1e-06 57.8 74 43.2
Glyma.18G000500 Glycine max HOM05D003912 ORTHO05D004409 2.1e-06 57.8 74 44.6
Nn1g07894 Nelumbo nucifera HOM05D003912 ORTHO05D004409 2.1e-06 57.8 74 43.2
Os08g0528100 Oryza sativa ssp. japonica HOM05D003912 ORTHO05D004409 2.1e-06 57.8 76 40.8
Pp3c22_11200 Physcomitrium patens HOM05D003912 ORTHO05D004409 2.1e-06 57.8 73 41.1
SGA_v2.0_scaffold626G53246 Striga asiatica HOM05D003912 ORTHO05D004409 2.1e-06 57.8 75 41.3
THA.LOC104801027 Tarenaya hassleriana HOM05D003912 ORTHO05D004409 2.1e-06 57.8 77 46.8
ECA233G4597 Erigeron canadensis HOM05D003912 ORTHO05D004409 2.8e-06 57.4 74 47.3
CSS0014108 Camellia sinensis var. sinensis HOM05D003912 ORTHO05D004409 3.6e-06 57.0 73 41.1
ClCG05G003290 Citrullus lanatus HOM05D003912 ORTHO05D004409 3.6e-06 57.0 71 45.1
Sed0005652 Sechium edule HOM05D003912 ORTHO05D004409 3.6e-06 57.0 74 44.6
ClCG01G001440 Citrullus lanatus HOM05D001091 ORTHO05D001020 4.7e-06 56.6 124 27.4
MELO3C006310.2 Cucumis melo HOM05D003912 ORTHO05D004409 4.7e-06 56.6 71 45.1
Glyma.11G256600 Glycine max HOM05D003912 ORTHO05D004409 4.7e-06 56.6 74 43.2
Medtr3g083600 Medicago truncatula HOM05D003912 ORTHO05D004409 4.7e-06 56.6 72 44.4
Nitab4.5_0002260g0180 Nicotiana tabacum HOM05D003912 ORTHO05D004409 4.7e-06 56.6 72 44.4
Os08g0527900 Oryza sativa ssp. japonica HOM05D003912 ORTHO05D004409 4.7e-06 56.6 76 43.4
Rhsim02G0058800 Rhododendron simsii HOM05D003912 ORTHO05D004409 4.7e-06 56.6 73 43.8
GSVIVG01021053001 Vitis vinifera HOM05D003912 ORTHO05D004409 4.7e-06 56.6 73 42.5
Haze_11613 Corylus avellana HOM05D003912 ORTHO05D004409 6.1e-06 56.2 75 45.3
Os08g0527100 Oryza sativa ssp. japonica HOM05D003912 ORTHO05D004409 6.1e-06 56.2 76 42.1
Potri.017G055600 Populus trichocarpa HOM05D003912 ORTHO05D004409 6.1e-06 56.2 74 43.2
QL06p025007 Quercus lobata HOM05D003912 ORTHO05D004409 6.1e-06 56.2 73 42.5
Aa31LG5G4440 Aethionema arabicum HOM05D003912 ORTHO05D004409 8.0e-06 55.8 75 45.3
arahy.Tifrunner.gnm1.ann1.2BAE9R Arachis hypogaea HOM05D003912 ORTHO05D004409 8.0e-06 55.8 76 40.8
CsaV3_3G010910 Cucumis sativus L. HOM05D003912 ORTHO05D004409 8.0e-06 55.8 71 45.1
Sed0004228 Sechium edule HOM05D001091 ORTHO05D001020 8.0e-06 55.8 124 26.6


User provided reference genes

Program Settings