Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62043876 Chenopodium quinoa HOM05D005817 ORTHO05D007140 3.5e-172 608.2 312 100.0
EL10Ac6g13990 Beta vulgaris HOM05D005817 ORTHO05D007140 9.3e-133 477.2 286 87.1
AUR62032450 Chenopodium quinoa HOM05D005817 ORTHO05D007140 1.3e-131 473.4 291 87.6
Ah.03g136770 Amaranthus hybridus HOM05D005817 ORTHO05D007140 8.5e-126 454.1 313 78.0
Hund15375 Selenicereus undatus HOM05D005817 ORTHO05D007140 2.8e-113 412.5 286 76.2
Lj9C259G5 Lonicera japonica HOM05D001465 ORTHO05D001434 2.5e-109 399.4 289 74.7
TAR628G1209 Trochodendron aralioides HOM05D005817 ORTHO05D007140 4.7e-108 395.2 283 72.4
Hma1.2p1_0052F.1_g030020 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 2.6e-106 389.4 281 71.9
Rhsim05G0115500 Rhododendron simsii HOM05D005817 ORTHO05D007140 9.7e-106 387.5 280 71.4
Aqoxy6G00025 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 6.3e-105 384.8 282 70.6
Oeu028475.1 Olea europaea HOM05D005817 ORTHO05D007140 6.3e-105 384.8 286 72.0
Nn5g27184 Nelumbo nucifera HOM05D005817 ORTHO05D007140 8.2e-105 384.4 280 70.7
TAR376G0556 Trochodendron aralioides HOM05D005817 ORTHO05D007140 8.2e-105 384.4 282 72.0
CANSAT01G0715 Cannabis sativa HOM05D005817 ORTHO05D007140 1.1e-104 384.0 285 72.3
CSS0044256 Camellia sinensis var. sinensis HOM05D005817 ORTHO05D007140 1.4e-104 383.6 278 72.7
Lj4g0018327 Lotus japonicus HOM05D005817 ORTHO05D007140 2.4e-104 382.9 282 70.9
Oeu028476.1 Olea europaea HOM05D005817 ORTHO05D007140 2.4e-104 382.9 286 71.7
QL02p103359 Quercus lobata HOM05D005817 ORTHO05D007140 1.2e-103 380.6 280 71.1
Gohir.D06G122800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 4.5e-103 378.6 277 72.2
vmacro19830 Vaccinium macrocarpon HOM05D005817 ORTHO05D007140 4.5e-103 378.6 280 68.9
PSO017G5300 Papaver somniferum HOM05D005817 ORTHO05D007140 7.7e-103 377.9 279 71.0
CsaV3_5G027420 Cucumis sativus L. HOM05D005817 ORTHO05D007140 1.3e-102 377.1 281 70.1
Gorai.010G142900 Gossypium raimondii HOM05D005817 ORTHO05D007140 1.3e-102 377.1 277 71.8
Gohir.A06G115800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 1.7e-102 376.7 277 72.2
Prupe.1G585700 Prunus persica HOM05D005817 ORTHO05D007140 1.7e-102 376.7 283 70.0
PSO170G5162 Papaver somniferum HOM05D005817 ORTHO05D007140 2.2e-102 376.3 279 71.0
MD08G1248300 Malus domestica HOM05D005817 ORTHO05D007140 5.0e-102 375.2 282 70.2
Lalb_Chr07g0176811 Lupinus albus HOM05D005817 ORTHO05D007140 8.5e-102 374.4 282 69.9
MD15G1443200 Malus domestica HOM05D005817 ORTHO05D007140 1.1e-101 374.0 290 69.0
TWI14G0757 Tripterygium wilfordii HOM05D005817 ORTHO05D007140 3.2e-101 372.5 276 72.1
Actinidia01635 Actinidia chinensis HOM05D005817 ORTHO05D007140 5.5e-101 371.7 282 70.6
CiPaw.06G176700 Carya illinoinensis HOM05D005817 ORTHO05D007140 9.4e-101 370.9 281 69.4
Glyma.07G272500 Glycine max HOM05D005817 ORTHO05D007140 1.6e-100 370.2 279 69.5
Sed0006174 Sechium edule HOM05D005817 ORTHO05D007140 1.6e-100 370.2 290 68.3
Thecc.06G019900 Theobroma cacao HOM05D005817 ORTHO05D007140 1.6e-100 370.2 278 71.9
Cc02_g23610 Coffea canephora HOM05D005817 ORTHO05D007140 3.6e-100 369.0 286 70.6
Duzib160G0844 Durio zibethinus HOM05D005817 ORTHO05D007140 3.6e-100 369.0 277 71.1
Psat4g000960 Pisum sativum HOM05D005817 ORTHO05D007140 1.0e-99 367.5 279 69.5
Ciclev10002025m.g Citrus clementina HOM05D005817 ORTHO05D007140 1.8e-99 366.7 276 71.0
RcHm_v2.0_Chr7g0219661 Rosa chinensis HOM05D005817 ORTHO05D007140 2.3e-99 366.3 280 68.9
Dinv29679 Davidia involucrata HOM05D005817 ORTHO05D007140 4.0e-99 365.5 258 74.4
Phvul.003G075900 Phaseolus vulgaris HOM05D005817 ORTHO05D007140 5.2e-99 365.2 285 67.7
Ca_13529_v3 Cicer arietinum L. HOM05D005817 ORTHO05D007140 8.8e-99 364.4 280 68.9
Solyc01g103020.4 Solanum lycopersicum HOM05D005817 ORTHO05D007140 8.8e-99 364.4 275 72.4
arahy.Tifrunner.gnm1.ann1.86KQ48 Arachis hypogaea HOM05D005817 ORTHO05D007140 1.2e-98 364.0 300 64.7
arahy.Tifrunner.gnm1.ann1.NEQE4P Arachis hypogaea HOM05D005817 ORTHO05D007140 1.5e-98 363.6 300 64.7
Atru.chr6.226 Acer truncatum HOM05D005817 ORTHO05D007140 2.0e-98 363.2 274 71.5
Eucgr.I02797 Eucalyptus grandis HOM05D005817 ORTHO05D007140 2.0e-98 363.2 277 69.3
ATR1089G128 Amborella trichopoda HOM05D005817 ORTHO05D007140 4.4e-98 362.1 291 68.0
Nitab4.5_0007689g0010 Nicotiana tabacum HOM05D005817 ORTHO05D007140 4.4e-98 362.1 277 69.7
TPR.G6004 Trifolium pratense HOM05D005817 ORTHO05D007140 4.4e-98 362.1 283 67.5
PGR142G3472 Punica granatum HOM05D005817 ORTHO05D007140 9.7e-98 360.9 281 69.0
CAN.G855.54 Capsicum annuum HOM05D005817 ORTHO05D007140 1.7e-97 360.1 277 71.5
Medtr4g134630 Medicago truncatula HOM05D005817 ORTHO05D007140 2.2e-97 359.8 283 67.5
PGSC0003DMG400020713 Solanum tuberosum HOM05D005817 ORTHO05D007140 4.8e-97 358.6 275 71.6
THA.LOC104824089 Tarenaya hassleriana HOM05D005817 ORTHO05D007140 6.3e-97 358.2 277 68.6
COL.COLO4_31118 Corchorus olitorius HOM05D005817 ORTHO05D007140 8.2e-97 357.8 312 63.8
FvH4_5g27830 Fragaria vesca HOM05D005817 ORTHO05D007140 1.8e-96 356.7 280 66.4
FAN18G1253 Fragaria x ananassa HOM05D005817 ORTHO05D007140 3.1e-96 355.9 280 66.4
CDE07G1199 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 4.1e-96 355.5 277 67.9
Lsat_1_v5_gn_9_83341 Lactuca sativa HOM05D005817 ORTHO05D007140 7.0e-96 354.8 292 67.1
GSVIVG01023145001 Vitis vinifera HOM05D005817 ORTHO05D007140 7.0e-96 354.8 258 71.3
Sp2g13800 Schrenkiella parvula HOM05D005817 ORTHO05D007140 1.2e-95 354.0 280 69.3
HanXRQChr15g0469671 Helianthus annuus HOM05D005817 ORTHO05D007140 4.5e-95 352.1 282 69.5
Sabra01G0174300 Salix brachista HOM05D005817 ORTHO05D007140 1.0e-94 350.9 304 64.1
MBI06_g16620_MAGBIO Magnolia biondii HOM05D005817 ORTHO05D007140 2.9e-94 349.4 263 70.0
Peaxi162Scf00011g01920 Petunia axillaris HOM05D005817 ORTHO05D007140 8.5e-94 347.8 340 57.9
C07p33290 Brassica napus HOM05D005817 ORTHO05D007140 2.5e-93 346.3 275 67.3
BolC7t43840H Brassica oleracea HOM05D005817 ORTHO05D007140 2.5e-93 346.3 275 67.3
BcaC06g31224 Brassica carinata HOM05D005817 ORTHO05D007140 4.2e-93 345.5 275 67.6
Glyma.17G001900 Glycine max HOM05D005817 ORTHO05D007140 9.4e-93 344.4 260 70.0
Carub.0005s0157 Capsella rubella HOM05D005817 ORTHO05D007140 1.2e-92 344.0 276 67.0
CDE08G0344 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 1.6e-92 343.6 281 65.1
Thhalv10004677m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 1.6e-92 343.6 277 67.1
SGA_v2.0_scaffold8G04460 Striga asiatica HOM05D005817 ORTHO05D007140 4.7e-92 342.0 304 63.2
Manes.10G106400 Manihot esculenta HOM05D005817 ORTHO05D007140 1.0e-91 340.9 264 70.5
AT2G02570 Arabidopsis thaliana HOM05D005817 ORTHO05D007140 2.3e-91 339.7 278 65.1
Migut.N00865 Erythranthe guttata HOM05D005817 ORTHO05D007140 2.3e-91 339.7 278 65.1
A06p43560 Brassica napus HOM05D005817 ORTHO05D007140 6.8e-91 338.2 275 65.5
Haze_09983 Corylus avellana HOM05D005817 ORTHO05D007140 5.7e-90 335.1 342 55.6
Potri.004G229200 Populus trichocarpa HOM05D005817 ORTHO05D007140 1.3e-89 334.0 255 69.8
BcaC03g17157 Brassica carinata HOM05D005817 ORTHO05D007140 2.8e-89 332.8 277 64.3
Manes.07G030600 Manihot esculenta HOM05D005817 ORTHO05D007140 1.4e-88 330.5 257 68.5
BraA06t27241Z Brassica rapa HOM05D005817 ORTHO05D007140 4.1e-88 328.9 301 60.5
Mapoly0107s0026 Marchantia polymorpha HOM05D005817 ORTHO05D007140 9.1e-88 327.8 286 63.6
Sc03g0006230 Simmondsia chinensis HOM05D005817 ORTHO05D007140 2.7e-87 326.2 214 75.7
C02p50820 Brassica napus HOM05D005817 ORTHO05D007140 5.9e-87 325.1 280 63.9
FAN04G1604 Fragaria x ananassa HOM05D005817 ORTHO05D007140 5.9e-87 325.1 348 53.4
Aa31LG2G7570 Aethionema arabicum HOM05D005817 ORTHO05D007140 2.9e-86 322.8 315 57.8
Sopen01g045430 Solanum pennellii HOM05D005817 ORTHO05D007140 1.5e-85 320.5 229 74.2
AL5G11840 Arabidopsis lyrata HOM05D005817 ORTHO05D007140 5.5e-85 318.5 258 66.3
BolC2t11164H Brassica oleracea HOM05D005817 ORTHO05D007140 5.5e-85 318.5 276 63.4
Lj5C284T7 Lonicera japonica HOM05D005817 ORTHO05D007140 5.5e-85 318.5 205 79.5
VMungo1215G1434 Vigna mungo HOM05D005817 ORTHO05D007140 9.5e-85 317.8 208 75.0
Os08g0109900 Oryza sativa ssp. japonica HOM05D005817 ORTHO05D007140 2.8e-84 316.2 255 65.5
ClCG11G000310 Citrullus lanatus HOM05D005817 ORTHO05D007140 8.0e-84 314.7 292 61.6
SHI04993 Sapria himalayana HOM05D005817 ORTHO05D007140 8.0e-84 314.7 322 55.3
ECA236G3641 Erigeron canadensis HOM05D000284 ORTHO05D000805 2.6e-82 309.7 260 66.2
A02p33050 Brassica napus HOM05D005817 ORTHO05D007140 1.3e-81 307.4 257 65.4
Pp3c10_3580 Physcomitrium patens HOM05D005817 ORTHO05D007140 3.8e-78 295.8 329 51.4
unitig_22.g6849 Utricularia gibba HOM05D005817 ORTHO05D007140 5.0e-78 295.4 337 51.3
Aqoxy385s001 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 3.6e-76 289.3 282 58.9
AagrBONN_evm.TU.Sc2ySwM_117.207 Anthoceros agrestis HOM05D005817 ORTHO05D007140 8.0e-76 288.1 286 54.9
Hma1.2p1_0052F.1_g030010 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 8.0e-76 288.1 187 79.1
BraA02t08326Z Brassica rapa HOM05D005817 ORTHO05D007140 3.0e-75 286.2 257 61.9
FAN08G2336 Fragaria x ananassa HOM05D005817 ORTHO05D007140 8.9e-75 284.6 349 49.9
Actinidia26194 Actinidia chinensis HOM05D005817 ORTHO05D007140 9.8e-74 281.2 288 59.0
Pp3c10_3582 Physcomitrium patens HOM05D005817 ORTHO05D007140 7.0e-72 275.0 228 63.6
CDE04G1950 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 2.7e-71 273.1 233 63.5
SMO117G0163 Selaginella moellendorffii HOM05D005817 ORTHO05D007140 1.1e-69 267.7 193 67.4
Nitab4.5_0003247g0070 Nicotiana tabacum HOM05D005817 ORTHO05D007140 7.3e-69 265.0 227 66.1
Duzib235G1547 Durio zibethinus HOM05D005817 ORTHO05D007140 9.5e-69 264.6 229 66.4
Lalb_Chr12g0195861 Lupinus albus HOM05D005817 ORTHO05D007140 2.0e-66 256.9 168 76.8
HPP92_002041 Vanilla planifolia HOM05D005817 ORTHO05D007140 1.3e-65 254.2 239 61.1
Pp3c1_22040 Physcomitrium patens HOM05D005817 ORTHO05D007140 3.7e-65 252.7 289 51.6
CDE02G1227 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 1.1e-64 251.1 281 51.6
CBR_g40810 Chara braunii HOM05D005817 ORTHO05D007140 9.2e-64 248.1 335 46.9
Pp3c14_9240 Physcomitrium patens HOM05D005817 ORTHO05D007140 2.7e-63 246.5 274 52.9
Cpa.g.sc173.14 Carica papaya HOM05D005817 ORTHO05D007140 2.3e-62 243.4 228 61.0
RcHm_v2.0_Chr5g0068831 Rosa chinensis HOM05D005817 ORTHO05D007140 4.4e-58 229.2 158 75.9
MSTRG.27880 Avicennia marina HOM05D005817 ORTHO05D007140 4.3e-53 212.6 205 60.0
Zm00001eb174130 Zea mays HOM05D005817 ORTHO05D007140 5.2e-51 205.7 126 84.1
MSTRG.601 Avicennia marina HOM05D005817 ORTHO05D007140 2.0e-42 177.2 187 56.1
Dinv29634 Davidia involucrata HOM05D005817 ORTHO05D007140 1.0e-38 164.9 129 63.6
VMungo0766G0001 Vigna mungo HOM05D005817 ORTHO05D007140 2.1e-28 130.6 147 50.3
Cre02.g106550 Chlamydomonas reinhardtii HOM05D005817 ORTHO05D007140 4.9e-25 119.4 193 39.9
MCO12G229 Micromonas commoda HOM05D005817 ORTHO05D007140 1.5e-21 107.8 286 30.8
PRCOL_00002712 Prasinoderma coloniale HOM05D005817 ORTHO05D007140 1.9e-16 90.9 329 29.8
SEGI_07435 Sequoiadendron giganteum HOM05D005817 ORTHO05D007140 1.0e-14 85.1 92 51.1
FvH4_3g40414 Fragaria vesca HOM05D005817 ORTHO05D007140 2.0e-10 70.9 74 54.1
Thhalv10005196m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 3.4e-10 70.1 52 69.2
COL.COLO4_38165 Corchorus olitorius HOM05D011921 ORTHO05D160408 1.4e-08 64.7 184 33.7
VMungo1148G0001 Vigna mungo HOM05D005817 ORTHO05D007140 1.0e-06 58.5 58 56.9


User provided reference genes

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