Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62042963 Chenopodium quinoa HOM05D005319 ORTHO05D006632 0.0e+00 1561.2 804 100.0
AUR62041124 Chenopodium quinoa HOM05D005319 ORTHO05D006632 0.0e+00 1441.4 861 87.5
Sc12g0006940 Simmondsia chinensis HOM05D005319 ORTHO05D006632 1.1e-259 900.2 850 58.2
CSS0036760 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 6.3e-258 894.4 807 58.0
Ciclev10000238m.g Citrus clementina HOM05D005319 ORTHO05D006632 2.5e-254 882.5 815 57.9
Hma1.2p1_0052F.1_g030050 Hydrangea macrophylla HOM05D005319 ORTHO05D006632 4.2e-254 881.7 793 58.1
TAR628G0438 Trochodendron aralioides HOM05D005319 ORTHO05D006632 3.6e-253 878.6 855 56.5
CSS0030211 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 8.0e-253 877.5 798 58.4
Manes.07G031200 Manihot esculenta HOM05D005319 ORTHO05D006632 3.3e-251 872.1 839 57.4
Atru.chr6.211 Acer truncatum HOM05D005319 ORTHO05D006632 9.1e-249 864.0 868 56.1
Potri.004G229732 Populus trichocarpa HOM05D005319 ORTHO05D006632 2.7e-245 852.4 806 56.3
Cfa004432 Carpinus fangiana HOM05D005319 ORTHO05D006632 3.4e-243 845.5 792 57.2
vmacro19823 Vaccinium macrocarpon HOM05D005319 ORTHO05D006632 4.4e-243 845.1 831 54.4
MSTRG.16462 Avicennia marina HOM05D005319 ORTHO05D006632 1.7e-239 833.2 797 55.3
Haze_09972 Corylus avellana HOM05D005319 ORTHO05D006632 6.6e-239 831.2 799 56.9
Lj5A285G49 Lonicera japonica HOM05D005319 ORTHO05D006632 8.6e-239 830.9 830 54.8
Thecc.06G020300 Theobroma cacao HOM05D005319 ORTHO05D006632 1.6e-237 826.6 846 55.1
Rhsim05G0118000 Rhododendron simsii HOM05D005319 ORTHO05D006632 4.0e-236 822.0 809 54.3
Actinidia26200 Actinidia chinensis HOM05D005319 ORTHO05D006632 1.5e-235 820.1 806 55.6
QL02p103594 Quercus lobata HOM05D005319 ORTHO05D006632 4.4e-235 818.5 802 56.4
Glyma.12G164200 Glycine max HOM05D005319 ORTHO05D006632 5.7e-235 818.1 797 54.1
Lj5g0014697 Lotus japonicus HOM05D005319 ORTHO05D006632 6.3e-234 814.7 792 54.8
Sed0027556 Sechium edule HOM05D005319 ORTHO05D006632 8.3e-234 814.3 793 55.1
Prupe.1G586100 Prunus persica HOM05D005319 ORTHO05D006632 7.0e-233 811.2 791 56.5
Phvul.006G221600 Phaseolus vulgaris HOM05D005319 ORTHO05D006632 1.2e-232 810.4 797 54.0
Glyma.16G000500 Glycine max HOM05D005319 ORTHO05D006632 1.7e-231 806.6 796 53.9
MD15G1443600 Malus domestica HOM05D005319 ORTHO05D006632 1.7e-231 806.6 790 55.4
CAN.G855.58 Capsicum annuum HOM05D005319 ORTHO05D006632 1.1e-230 803.9 856 53.4
VMungo1127G0564 Vigna mungo HOM05D005319 ORTHO05D006632 1.5e-230 803.5 792 53.3
Duzib192G0868 Durio zibethinus HOM05D005319 ORTHO05D006632 1.9e-230 803.1 852 52.8
Medtr8g015930 Medicago truncatula HOM05D005319 ORTHO05D006632 1.9e-230 803.1 795 53.2
Solyc01g102970.3 Solanum lycopersicum HOM05D005319 ORTHO05D006632 1.9e-230 803.1 862 52.8
TPR.G5958 Trifolium pratense HOM05D005319 ORTHO05D006632 1.9e-230 803.1 796 53.0
Sopen01g045380 Solanum pennellii HOM05D005319 ORTHO05D006632 3.3e-230 802.4 861 52.4
GSVIVG01023136001 Vitis vinifera HOM05D005319 ORTHO05D006632 2.8e-229 799.3 792 56.4
RcHm_v2.0_Chr7g0219031 Rosa chinensis HOM05D005319 ORTHO05D006632 8.0e-229 797.7 789 55.1
PGR142G1786 Punica granatum HOM05D005319 ORTHO05D006632 1.0e-228 797.3 806 53.7
Nn5g27146 Nelumbo nucifera HOM05D005319 ORTHO05D006632 1.8e-228 796.6 841 53.2
Peaxi162Scf00011g02012 Petunia axillaris HOM05D005319 ORTHO05D006632 2.3e-228 796.2 842 53.3
MD08G1248800 Malus domestica HOM05D005319 ORTHO05D006632 4.0e-228 795.4 791 54.7
Nitab4.5_0003247g0020 Nicotiana tabacum HOM05D005319 ORTHO05D006632 8.9e-228 794.3 868 52.5
Psat1g223960 Pisum sativum HOM05D005319 ORTHO05D006632 1.5e-227 793.5 804 52.9
Gorai.009G114100 Gossypium raimondii HOM05D005319 ORTHO05D006632 2.6e-227 792.7 788 53.4
Nn4g24765 Nelumbo nucifera HOM05D005319 ORTHO05D006632 9.8e-227 790.8 842 53.0
Lalb_Chr18g0061161 Lupinus albus HOM05D005319 ORTHO05D006632 2.2e-226 789.6 785 53.8
CsaV3_5G027480 Cucumis sativus L. HOM05D005319 ORTHO05D006632 1.4e-225 786.9 785 53.2
Gohir.D05G110000 Gossypium hirsutum HOM05D005319 ORTHO05D006632 1.4e-225 786.9 788 52.9
CANSAT01G0698 Cannabis sativa HOM05D005319 ORTHO05D006632 2.4e-225 786.2 802 54.2
Gohir.A05G109700 Gossypium hirsutum HOM05D005319 ORTHO05D006632 2.4e-225 786.2 788 53.0
Gorai.011G090800 Gossypium raimondii HOM05D005319 ORTHO05D006632 3.2e-225 785.8 791 53.1
ClCG11G000090 Citrullus lanatus HOM05D005319 ORTHO05D006632 7.0e-225 784.6 786 54.6
Cc02_g23690 Coffea canephora HOM05D005319 ORTHO05D006632 2.7e-224 782.7 800 54.0
TWI59G0928 Tripterygium wilfordii HOM05D005319 ORTHO05D006632 3.5e-224 782.3 844 52.5
Nitab4.5_0005164g0040 Nicotiana tabacum HOM05D005319 ORTHO05D006632 3.0e-223 779.2 868 51.5
Gohir.D10G083500 Gossypium hirsutum HOM05D005319 ORTHO05D006632 3.3e-222 775.8 795 52.8
arahy.Tifrunner.gnm1.ann1.2TW5YI Arachis hypogaea HOM05D005319 ORTHO05D006632 2.3e-220 769.6 841 49.7
FvH4_5g27610 Fragaria vesca HOM05D005319 ORTHO05D006632 5.2e-220 768.5 840 52.4
SGA_v2.0_scaffold254G45232 Striga asiatica HOM05D005319 ORTHO05D006632 2.0e-219 766.5 773 52.5
COL.COLO4_31114 Corchorus olitorius HOM05D005319 ORTHO05D006632 1.2e-216 757.3 794 52.0
THA.LOC104806623 Tarenaya hassleriana HOM05D005319 ORTHO05D006632 2.7e-216 756.1 791 51.1
MELO3C022920.2 Cucumis melo HOM05D005319 ORTHO05D006632 4.6e-216 755.4 765 53.3
FAN04G2290 Fragaria x ananassa HOM05D005319 ORTHO05D006632 1.7e-215 753.4 762 54.6
FAN13G2205 Fragaria x ananassa HOM05D005319 ORTHO05D006632 6.4e-210 734.9 798 52.3
Sabra01G0174900 Salix brachista HOM05D005319 ORTHO05D006632 1.9e-209 733.4 796 51.5
FAN18G0588 Fragaria x ananassa HOM05D005319 ORTHO05D006632 5.4e-209 731.9 849 50.8
unitig_8.g2963 Utricularia gibba HOM05D005319 ORTHO05D006632 2.3e-207 726.5 852 49.3
HanXRQChr03g0090101 Helianthus annuus HOM05D005319 ORTHO05D006632 2.4e-204 716.5 804 51.0
Carub.0007s1678 Capsella rubella HOM05D005319 ORTHO05D006632 3.1e-204 716.1 844 47.5
Thhalv10024416m.g Eutrema salsugineum HOM05D005319 ORTHO05D006632 5.2e-204 715.3 838 48.6
Eucgr.I02798 Eucalyptus grandis HOM05D005319 ORTHO05D006632 2.0e-203 713.4 657 56.6
ECA240G4281 Erigeron canadensis HOM05D005319 ORTHO05D006632 9.9e-203 711.1 850 46.7
AL7G28980 Arabidopsis lyrata HOM05D005319 ORTHO05D006632 8.4e-202 708.0 792 48.6
Sp7g22260 Schrenkiella parvula HOM05D005319 ORTHO05D006632 9.3e-201 704.5 845 47.8
AT4G24270 Arabidopsis thaliana HOM05D005319 ORTHO05D006632 1.6e-200 703.7 837 47.7
PSO170G3892 Papaver somniferum HOM05D005319 ORTHO05D006632 7.8e-200 701.4 805 48.9
Aa31LG7G10320 Aethionema arabicum HOM05D005319 ORTHO05D006632 1.3e-199 700.7 857 46.1
Aqoxy6G00019 Aquilegia oxysepala HOM05D005319 ORTHO05D006632 3.9e-199 699.1 802 48.5
CARHR231700 Cardamine hirsuta HOM05D005319 ORTHO05D006632 8.7e-199 698.0 837 47.2
BcaC09g50887 Brassica carinata HOM05D005319 ORTHO05D006632 2.5e-198 696.4 830 47.6
C01p19580 Brassica napus HOM05D005319 ORTHO05D006632 5.6e-198 695.3 830 47.5
PSO017G2844 Papaver somniferum HOM05D005319 ORTHO05D006632 1.1e-196 691.0 805 48.4
BcaNung01135 Brassica carinata HOM05D005319 ORTHO05D006632 2.0e-195 686.8 835 47.1
BolC1t01883H Brassica oleracea HOM05D005319 ORTHO05D006632 3.4e-195 686.0 829 46.7
BraA01t01501Z Brassica rapa HOM05D005319 ORTHO05D006632 3.4e-195 686.0 837 47.4
CDE07G1780 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 9.9e-195 684.5 810 48.1
A01p15600 Brassica napus HOM05D005319 ORTHO05D006632 2.1e-192 676.8 837 47.1
Lsat_1_v5_gn_9_125320 Lactuca sativa HOM05D005319 ORTHO05D006632 4.6e-192 675.6 811 48.5
HPP92_001202 Vanilla planifolia HOM05D005319 ORTHO05D006632 1.3e-189 667.5 796 46.6
Dinv29683 Davidia involucrata HOM05D005319 ORTHO05D006632 1.1e-185 654.4 756 50.1
CiPaw.05G159300 Carya illinoinensis HOM05D005319 ORTHO05D006632 7.4e-182 641.7 476 64.5
Migut.B00712 Erythranthe guttata HOM05D005319 ORTHO05D006632 4.8e-181 639.0 616 55.5
EL10As26g24243 Beta vulgaris HOM05D005319 ORTHO05D006632 3.4e-179 632.9 445 73.9
Cpa.g.sc173.4 Carica papaya HOM05D005319 ORTHO05D006632 5.8e-179 632.1 796 47.2
DCAR_003273 Daucus carota HOM05D005319 ORTHO05D006632 1.1e-177 627.9 841 45.2
Zm00001eb260720 Zea mays HOM05D005319 ORTHO05D006632 1.2e-176 624.4 805 44.2
Prupe.2G119000 Prunus persica HOM05D005319 ORTHO05D006632 2.7e-176 623.2 793 48.2
Os08g0113200 Oryza sativa ssp. japonica HOM05D005319 ORTHO05D006632 1.1e-174 617.8 809 44.7
CDE04G1013 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 9.6e-174 614.8 713 46.4
AagrBONN_evm.TU.Sc2ySwM_228.2043 Anthoceros agrestis HOM05D005319 ORTHO05D006632 7.4e-158 562.0 807 39.9
Pp3c2_22040 Physcomitrium patens HOM05D005319 ORTHO05D006632 7.4e-158 562.0 826 39.3
ATR1089G095 Amborella trichopoda HOM05D005319 ORTHO05D006632 3.2e-153 546.6 677 47.0
Mapoly0013s0201 Marchantia polymorpha HOM05D005319 ORTHO05D006632 4.8e-149 532.7 809 40.3
Gohir.A10G157900 Gossypium hirsutum HOM05D005319 ORTHO05D006632 2.2e-146 523.9 613 49.9
SMO367G0583 Selaginella moellendorffii HOM05D005319 ORTHO05D006632 9.7e-142 508.4 738 39.6
EL10As26g24244 Beta vulgaris HOM05D005319 ORTHO05D006632 3.7e-141 506.5 391 70.6
SHI04989 Sapria himalayana HOM05D005319 ORTHO05D006632 1.2e-134 485.0 581 47.0
Ca_00016_v3 Cicer arietinum L. HOM05D005319 ORTHO05D006632 2.2e-133 480.7 551 49.4
MBI03_g21086_MAGBIO Magnolia biondii HOM05D005319 ORTHO05D006632 7.5e-126 455.7 444 55.6
CBR_g44339 Chara braunii HOM05D005319 ORTHO05D006632 8.6e-114 415.6 771 33.9
Actinidia01642 Actinidia chinensis HOM05D005319 ORTHO05D006632 7.3e-113 412.5 442 50.0
Oeu043602.1 Olea europaea HOM05D005319 ORTHO05D006632 9.5e-113 412.1 405 52.6
PGSC0003DMG400020717 Solanum tuberosum HOM05D005319 ORTHO05D006632 1.4e-84 318.5 395 48.6
ECA247G0718 Erigeron canadensis HOM05D005319 ORTHO05D006632 7.1e-84 316.2 448 43.8
Hund15346 Selenicereus undatus HOM05D005319 ORTHO05D006632 2.3e-82 311.2 339 54.3
MBI03_g34263_MAGBIO Magnolia biondii HOM05D005319 ORTHO05D006632 5.4e-76 290.0 427 44.3
C01p22600 Brassica napus HOM05D005319 ORTHO05D006632 8.1e-72 276.2 224 58.9
Cre12.g546700 Chlamydomonas reinhardtii HOM05D005319 ORTHO05D006632 1.1e-68 265.8 494 33.0
Oeu043603.1 Olea europaea HOM05D005319 ORTHO05D006632 1.0e-66 259.2 482 39.0
Ca_28127_v3 Cicer arietinum L. HOM05D005319 ORTHO05D006632 5.7e-49 200.3 188 52.7
CiPaw.05G159200 Carya illinoinensis HOM05D005319 ORTHO05D006632 1.6e-43 182.2 197 54.8
PRCOL_00002327 Prasinoderma coloniale HOM05D005319 ORTHO05D006632 2.2e-32 145.2 443 23.9
MCO03G034 Micromonas commoda HOM05D005319 ORTHO05D006632 2.7e-27 128.3 191 38.2
BcaC09g50640 Brassica carinata HOM05D005319 ORTHO05D006632 1.8e-26 125.6 203 36.9
SEGI_30405 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 1.8e-26 125.6 90 58.9
SHI04988 Sapria himalayana HOM05D005319 ORTHO05D006632 2.2e-24 118.6 86 65.1
Ciclev10004084m.g Citrus clementina HOM05D005319 ORTHO05D006632 3.5e-22 111.3 82 61.0
Lj1A1166G72 Lonicera japonica HOM05D005319 ORTHO05D006632 4.7e-19 100.9 181 38.1
Lj6A128G22 Lonicera japonica HOM05D005319 ORTHO05D006632 1.0e-18 99.8 175 42.3
EL10Ac9g22556 Beta vulgaris HOM05D005319 ORTHO05D006632 4.4e-17 94.4 75 64.0
SHI04990 Sapria himalayana HOM05D005319 ORTHO05D006632 9.8e-17 93.2 138 46.4
Lj1A1166G73 Lonicera japonica HOM05D005319 ORTHO05D006632 2.2e-16 92.0 359 29.8
EL10Ac6g13976 Beta vulgaris HOM05D005319 ORTHO05D006632 1.4e-15 89.4 106 49.1
SEGI_30773 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 7.7e-14 83.6 121 40.5
Nn3g19779 Nelumbo nucifera HOM05D002279 ORTHO05D002644 2.7e-11 75.1 382 25.9
Gohir.D11G139400 Gossypium hirsutum HOM05D002279 ORTHO05D002644 4.0e-10 71.2 338 24.6
Gorai.007G149700 Gossypium raimondii HOM05D002279 ORTHO05D002644 5.2e-10 70.9 339 24.5
Gohir.A11G133300 Gossypium hirsutum HOM05D002279 ORTHO05D002644 1.2e-09 69.7 342 25.1
C01p22550 Brassica napus HOM05D005319 ORTHO05D006632 1.5e-09 69.3 112 42.0
BolC1t02188H Brassica oleracea HOM05D005319 ORTHO05D006632 1.5e-09 69.3 112 42.0
Gohir.A07G152100 Gossypium hirsutum HOM05D002279 ORTHO05D002644 1.3e-08 66.2 343 25.1
FvH4_5g37876 Fragaria vesca HOM05D003496 ORTHO05D003909 3.7e-08 64.7 60 53.3
Gohir.D07G158300 Gossypium hirsutum HOM05D002279 ORTHO05D002644 4.9e-08 64.3 343 25.4
Gorai.001G181500 Gossypium raimondii HOM05D002279 ORTHO05D002644 6.3e-08 63.9 343 25.4
Duzib133G0328 Durio zibethinus HOM05D002279 ORTHO05D002644 1.1e-07 63.2 336 24.7
MCO14G511 Micromonas commoda HOM05D002097 ORTHO05D002248 2.4e-07 62.0 83 34.9
Gohir.A07G204300 Gossypium hirsutum HOM05D002279 ORTHO05D002644 4.1e-07 61.2 339 23.6
C01p19550 Brassica napus HOM05D005319 ORTHO05D006632 5.4e-07 60.8 129 38.0
Gohir.D07G210300 Gossypium hirsutum HOM05D002279 ORTHO05D002644 5.4e-07 60.8 339 24.2
CANSAT01G3007 Cannabis sativa HOM05D002279 ORTHO05D002644 7.0e-07 60.5 342 25.1
CDE11G0963 Ceratophyllum demersum HOM05D002279 ORTHO05D002644 7.0e-07 60.5 350 24.0
CBR_g40786 Chara braunii HOM05D002279 ORTHO05D002644 1.2e-06 59.7 192 24.5
Thecc.01G250900 Theobroma cacao HOM05D002279 ORTHO05D002644 1.2e-06 59.7 339 24.5
Cre17.g733208 Chlamydomonas reinhardtii HOM05D002097 ORTHO05D002248 2.0e-06 58.9 89 39.3
FvH4_1g23920 Fragaria vesca HOM05D002097 ORTHO05D002248 2.7e-06 58.5 87 32.2
FAN19G0610 Fragaria x ananassa HOM05D002097 ORTHO05D002248 2.7e-06 58.5 87 32.2
FAN23G2605 Fragaria x ananassa HOM05D002097 ORTHO05D002248 2.7e-06 58.5 87 32.2
FAN26G0991 Fragaria x ananassa HOM05D002097 ORTHO05D002248 2.7e-06 58.5 87 32.2
FAN28G1528 Fragaria x ananassa HOM05D002097 ORTHO05D002248 2.7e-06 58.5 87 32.2
Pp3c14_1940 Physcomitrium patens HOM05D006053 ORTHO05D008381 2.7e-06 58.5 80 35.0
RcHm_v2.0_Chr2g0119921 Rosa chinensis HOM05D002097 ORTHO05D002248 2.7e-06 58.5 87 32.2
FAN08G2337 Fragaria x ananassa HOM05D003496 ORTHO05D003909 3.5e-06 58.2 75 44.0
Oeu016642.3 Olea europaea HOM05D001586 ORTHO05D001543 3.5e-06 58.2 49 57.1
PGR119G1284 Punica granatum HOM05D002279 ORTHO05D002644 3.5e-06 58.2 329 24.9
CANSAT01G1185 Cannabis sativa HOM05D002097 ORTHO05D002248 5.9e-06 57.4 87 32.2
CiPaw.05G084300 Carya illinoinensis HOM05D002097 ORTHO05D002248 5.9e-06 57.4 87 32.2
MELO3C013338.2 Cucumis melo HOM05D002097 ORTHO05D002248 5.9e-06 57.4 87 32.2
CsaV3_7G001150 Cucumis sativus L. HOM05D002097 ORTHO05D002248 5.9e-06 57.4 87 32.2
ATR0584G217 Amborella trichopoda HOM05D002097 ORTHO05D002248 7.7e-06 57.0 87 32.2
RcHm_v2.0_Chr2g0099651 Rosa chinensis HOM05D001543 ORTHO05D001722 7.7e-06 57.0 67 34.3
Zm00001eb403170 Zea mays HOM05D002097 ORTHO05D002248 7.7e-06 57.0 87 32.2


User provided reference genes

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