Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 0.0e+00 1080.5 554 100.0
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 3.8e-286 987.6 592 86.7
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 4.6e-276 954.1 597 84.9
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 1.4e-261 906.0 593 79.1
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 2.2e-249 865.5 506 90.7
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 5.3e-248 860.9 593 75.9
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 4.5e-247 857.8 593 75.9
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 2.9e-246 855.1 581 76.8
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 6.5e-246 854.0 593 75.0
Hund02504 Selenicereus undatus HOM05D004329 ORTHO05D005516 2.1e-244 849.0 541 80.8
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 6.1e-244 847.4 586 76.1
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 1.8e-243 845.9 593 74.9
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 3.0e-243 845.1 583 75.3
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 5.2e-243 844.3 587 74.8
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 8.8e-243 843.6 599 74.1
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 8.8e-243 843.6 607 73.3
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 2.0e-242 842.4 583 75.5
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 2.6e-242 842.0 600 74.2
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 5.7e-242 840.9 584 75.2
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 5.7e-242 840.9 592 73.8
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 5.7e-242 840.9 601 73.0
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 9.7e-242 840.1 593 73.9
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 4.1e-240 834.7 610 73.1
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 4.1e-240 834.7 593 73.4
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 4.1e-240 834.7 594 73.1
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 2.6e-239 832.0 594 73.2
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 3.8e-238 828.2 586 74.1
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 1.1e-237 826.6 595 72.4
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 3.2e-237 825.1 604 72.4
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 5.5e-237 824.3 590 73.4
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 9.4e-237 823.5 593 73.2
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 2.7e-236 822.0 591 72.9
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 4.7e-236 821.2 594 72.2
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 8.0e-236 820.5 592 71.8
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 8.0e-236 820.5 582 72.7
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 1.8e-235 819.3 597 72.4
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 1.8e-235 819.3 591 72.8
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 2.3e-235 818.9 585 73.3
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 4.0e-235 818.1 584 71.9
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 6.7e-235 817.4 594 70.5
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 8.8e-235 817.0 593 72.0
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 1.5e-234 816.2 588 71.3
CiPaw.09G139600 Carya illinoinensis HOM05D004329 ORTHO05D005516 2.0e-234 815.8 559 75.5
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 2.0e-234 815.8 592 71.5
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 2.6e-234 815.5 592 71.5
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 2.6e-234 815.5 584 71.9
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 3.3e-234 815.1 597 72.5
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 3.3e-234 815.1 584 71.7
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 5.7e-234 814.3 595 70.1
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 9.7e-234 813.5 604 71.2
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 2.8e-233 812.0 586 72.2
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 3.7e-233 811.6 597 71.7
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 3.7e-233 811.6 585 72.6
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 3.7e-233 811.6 594 72.1
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 8.2e-233 810.4 600 69.3
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 8.2e-233 810.4 595 71.9
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 1.1e-232 810.1 588 70.7
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 2.4e-232 808.9 596 70.1
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 5.3e-232 807.7 594 70.0
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 5.3e-232 807.7 596 70.0
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 7.0e-232 807.4 593 71.0
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 7.0e-232 807.4 590 71.4
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 7.0e-232 807.4 594 71.9
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 9.1e-232 807.0 591 71.6
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 1.2e-231 806.6 596 70.3
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 1.2e-231 806.6 585 72.3
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 1.2e-231 806.6 582 71.8
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 1.6e-231 806.2 586 72.2
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 1.6e-231 806.2 594 71.5
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 2.0e-231 805.8 563 73.4
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 2.7e-231 805.4 585 72.3
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 2.7e-231 805.4 592 72.5
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 4.5e-231 804.7 596 70.0
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 4.5e-231 804.7 596 70.0
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 4.5e-231 804.7 596 70.0
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 5.9e-231 804.3 593 69.6
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 5.9e-231 804.3 593 70.0
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 1.3e-230 803.1 593 70.8
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.7e-230 802.7 594 71.5
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 2.9e-230 802.0 594 71.2
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 3.8e-230 801.6 586 72.5
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 6.5e-230 800.8 582 71.5
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 5.5e-229 797.7 608 69.4
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 7.2e-229 797.3 601 68.9
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 1.2e-228 796.6 594 70.7
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.8e-227 792.7 582 72.3
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 8.8e-227 790.4 585 70.4
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 1.2e-226 790.0 583 70.8
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 1.5e-226 789.6 641 66.5
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 2.0e-226 789.3 585 70.3
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 2.2e-225 785.8 600 68.3
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 6.3e-225 784.3 650 65.8
FAN08G1859 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.8e-224 782.7 552 74.3
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 2.4e-224 782.3 591 69.0
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 2.7e-223 778.9 563 72.6
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 2.7e-223 778.9 591 69.5
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 2.7e-223 778.9 592 69.6
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 1.7e-222 776.2 614 66.4
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 6.6e-222 774.2 556 72.1
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 3.3e-221 771.9 586 68.1
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 2.8e-220 768.8 591 68.5
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 2.8e-220 768.8 591 68.4
Actinidia08906 Actinidia chinensis HOM05D000877 ORTHO05D001509 2.3e-219 765.8 553 72.5
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 1.3e-217 760.0 674 62.5
DCAR_016350 Daucus carota HOM05D004329 ORTHO05D005516 1.1e-213 746.9 540 71.1
Cpa.g.sc13.162 Carica papaya HOM05D004329 ORTHO05D005516 1.2e-210 736.9 587 67.3
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 3.0e-206 722.2 605 64.3
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 4.0e-203 711.8 640 60.0
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 1.2e-199 700.3 582 64.6
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 3.0e-198 695.7 633 61.3
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 6.8e-195 684.5 471 75.8
MBI13_g15007_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 1.9e-192 676.4 493 71.4
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 2.1e-191 672.9 598 60.5
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 3.9e-190 668.7 593 59.9
PGSC0003DMG400015501 Solanum tuberosum HOM05D004329 ORTHO05D005516 7.3e-189 664.5 486 71.8
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 4.7e-188 661.8 479 71.4
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 2.0e-186 656.4 567 62.3
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 2.9e-177 625.9 393 79.4
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 4.6e-167 592.0 334 90.4
MBI13_g43178_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 3.2e-160 569.3 487 63.9
AagrBONN_evm.TU.Sc2ySwM_228.1186 Anthoceros agrestis HOM05D004329 ORTHO05D005516 2.4e-155 553.1 597 51.1
Cc09_g07950 Coffea canephora HOM05D004329 ORTHO05D005516 3.2e-152 542.7 432 66.4
Mapoly0153s0017 Marchantia polymorpha HOM05D004329 ORTHO05D005516 1.3e-150 537.3 591 50.6
Pp3c15_22190 Physcomitrium patens HOM05D004329 ORTHO05D005516 3.9e-150 535.8 583 50.1
Os08g0323000 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D005516 4.8e-132 475.7 427 59.0
CBR_g20988 Chara braunii HOM05D004329 ORTHO05D005516 6.1e-127 458.8 604 44.7
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 1.5e-125 454.1 289 80.6
HPP92_028710 Vanilla planifolia HOM05D004329 ORTHO05D005516 2.6e-125 453.4 407 59.7
A02p41850 Brassica napus HOM05D004329 ORTHO05D005516 3.2e-120 436.4 359 65.2
SMO356G0738 Selaginella moellendorffii HOM05D004329 ORTHO05D005516 1.8e-115 420.6 572 42.3
CDE07G0688 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 8.5e-113 411.8 249 83.5
FAN18G2676 Fragaria x ananassa HOM05D004329 ORTHO05D005516 3.1e-107 393.3 530 47.4
Nitab4.5_0017885g0010 Nicotiana tabacum HOM05D004329 ORTHO05D005516 4.7e-95 352.8 306 63.1
Aqoxy5G01090 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 7.5e-85 318.9 431 47.6
Cc00_g30130 Coffea canephora HOM05D004329 ORTHO05D005516 1.1e-83 315.1 280 61.1
TAR622G0210 Trochodendron aralioides HOM05D004329 ORTHO05D005516 6.2e-71 272.7 298 52.3
MBI13_g13130_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 4.4e-69 266.5 175 77.7
Cre06.g267100 Chlamydomonas reinhardtii HOM05D004329 ORTHO05D005516 1.3e-68 265.0 673 30.3
MCO15G338 Micromonas commoda HOM05D004329 ORTHO05D005516 6.0e-66 256.1 542 33.4
CDE07G1247 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 1.1e-62 245.4 273 50.9
BcaC03g18112 Brassica carinata HOM05D004329 ORTHO05D005516 9.9e-61 238.8 156 75.6
Cc09_g07990 Coffea canephora HOM05D004329 ORTHO05D005516 2.7e-58 230.7 154 76.6
Cc09_g07980 Coffea canephora HOM05D004329 ORTHO05D005516 1.0e-57 228.8 150 75.3
CSS0034501 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 1.7e-44 184.9 102 89.2
CSS0009974 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 8.4e-44 182.6 107 85.0
PRCOL_00003443 Prasinoderma coloniale HOM05D004329 ORTHO05D005516 6.1e-34 149.8 617 26.1
Solyc02g062830.2 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.9e-32 144.8 96 71.9
AagrBONN_evm.TU.Sc2ySwM_228.1281 Anthoceros agrestis HOM05D004329 ORTHO05D005516 1.3e-31 142.1 120 57.5
C02p61790 Brassica napus HOM05D004329 ORTHO05D005516 3.0e-25 120.9 90 67.8
Solyc02g062840.1 Solanum lycopersicum HOM05D004329 ORTHO05D005516 3.7e-23 114.0 66 80.3
CARHR275770 Cardamine hirsuta HOM05D004329 ORTHO05D005516 1.8e-22 111.7 90 60.0
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 1.2e-18 99.0 77 61.0
Lsat_1_v5_gn_2_122301 Lactuca sativa HOM05D009063 ORTHO05D011082 3.0e-17 94.4 157 38.9
Haze_22596 Corylus avellana HOM05D004329 ORTHO05D010424 5.1e-17 93.6 63 69.8
Lsat_1_v5_gn_5_81961 Lactuca sativa HOM05D004329 ORTHO05D005516 8.2e-15 86.3 49 83.7
CAN.G865.5 Capsicum annuum HOM05D004329 ORTHO05D005516 1.8e-14 85.1 58 65.5
Lsat_1_v5_gn_8_114301 Lactuca sativa HOM05D004329 ORTHO05D005516 4.1e-14 84.0 48 83.3
Hund31053 Selenicereus undatus HOM05D004329 ORTHO05D026010 4.1e-14 84.0 52 82.7
Hund31064 Selenicereus undatus HOM05D004329 ORTHO05D026010 4.1e-14 84.0 52 82.7
Zm00001eb202340 Zea mays HOM05D004329 ORTHO05D005516 2.6e-13 81.3 70 54.3
CSS0048280 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 4.5e-13 80.5 93 51.6
Cfa027290 Carpinus fangiana HOM05D004329 ORTHO05D121551 3.8e-12 77.4 625 22.1
AagrBONN_evm.TU.Sc2ySwM_228.1280 Anthoceros agrestis HOM05D004329 ORTHO05D005516 5.5e-11 73.6 185 31.4
Sopen02g013860 Solanum pennellii HOM05D004329 ORTHO05D026010 6.7e-09 66.6 56 64.3
COL.COLO4_03746 Corchorus olitorius HOM05D004329 ORTHO05D155270 1.8e-06 58.5 29 89.7


User provided reference genes

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