Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62041377 Chenopodium quinoa HOM05D004229 ORTHO05D005468 1.5e-144 516.2 266 100.0
AUR62036467 Chenopodium quinoa HOM05D004229 ORTHO05D005468 3.3e-94 349.0 185 95.1
EL10Ac7g16698 Beta vulgaris HOM05D004229 ORTHO05D005468 1.1e-84 317.4 226 74.3
Sc20g0001740 Simmondsia chinensis HOM05D004229 ORTHO05D005468 5.4e-81 305.1 203 76.4
Dinv31228 Davidia involucrata HOM05D004229 ORTHO05D005468 1.5e-78 297.0 203 72.9
Prupe.2G209100 Prunus persica HOM05D004229 ORTHO05D005468 4.3e-78 295.4 203 72.4
FAN06G0013 Fragaria x ananassa HOM05D004229 ORTHO05D005468 4.0e-76 288.9 203 72.4
Rhsim03G0230200 Rhododendron simsii HOM05D004229 ORTHO05D005468 5.2e-76 288.5 203 70.0
vmacro07123 Vaccinium macrocarpon HOM05D004229 ORTHO05D005468 6.8e-76 288.1 203 70.4
arahy.Tifrunner.gnm1.ann1.1PX64U Arachis hypogaea HOM05D004229 ORTHO05D005468 1.5e-75 287.0 203 70.4
arahy.Tifrunner.gnm1.ann1.DJS8Z9 Arachis hypogaea HOM05D004229 ORTHO05D005468 2.0e-75 286.6 226 65.9
arahy.Tifrunner.gnm1.ann1.LC1BQN Arachis hypogaea HOM05D004229 ORTHO05D005468 2.0e-75 286.6 226 65.9
FAN10G1099 Fragaria x ananassa HOM05D004229 ORTHO05D005468 2.0e-75 286.6 203 72.4
HanXRQChr12g0376891 Helianthus annuus HOM05D004229 ORTHO05D005468 2.0e-75 286.6 203 69.0
Lj2C19G5 Lonicera japonica HOM05D004229 ORTHO05D005468 4.4e-75 285.4 203 68.5
CSS0012456 Camellia sinensis var. sinensis HOM05D004229 ORTHO05D005468 5.8e-75 285.0 203 70.0
FAN10G0146 Fragaria x ananassa HOM05D004229 ORTHO05D005468 5.8e-75 285.0 203 71.9
CANSAT56G0520 Cannabis sativa HOM05D004229 ORTHO05D005468 7.6e-75 284.6 203 70.0
Solyc05g055600.4 Solanum lycopersicum HOM05D004229 ORTHO05D005468 7.6e-75 284.6 203 70.0
Sopen05g034050 Solanum pennellii HOM05D004229 ORTHO05D005468 7.6e-75 284.6 203 70.0
PGSC0003DMG400023478 Solanum tuberosum HOM05D004229 ORTHO05D005468 7.6e-75 284.6 203 69.5
FvH4_7g18830 Fragaria vesca HOM05D004229 ORTHO05D005468 9.9e-75 284.3 203 71.9
PGR142G2592 Punica granatum HOM05D004229 ORTHO05D005468 9.9e-75 284.3 203 71.4
Actinidia34806 Actinidia chinensis HOM05D004229 ORTHO05D005468 1.3e-74 283.9 203 69.0
Gohir.A05G411400 Gossypium hirsutum HOM05D004229 ORTHO05D005468 1.3e-74 283.9 203 68.0
HanXRQChr09g0248221 Helianthus annuus HOM05D004229 ORTHO05D005468 1.3e-74 283.9 203 68.5
FAN03G3391 Fragaria x ananassa HOM05D004229 ORTHO05D005468 2.2e-74 283.1 203 70.9
Gorai.012G005800 Gossypium raimondii HOM05D004229 ORTHO05D005468 2.2e-74 283.1 234 62.4
CiPaw.01G268900 Carya illinoinensis HOM05D004229 ORTHO05D005468 2.9e-74 282.7 188 72.3
Peaxi162Scf00176g01415 Petunia axillaris HOM05D004229 ORTHO05D005468 3.8e-74 282.3 226 65.5
TAR633G0060 Trochodendron aralioides HOM05D004229 ORTHO05D005468 3.8e-74 282.3 220 65.5
COL.COLO4_17138 Corchorus olitorius HOM05D004229 ORTHO05D005468 6.4e-74 281.6 234 62.4
Gohir.D04G004600 Gossypium hirsutum HOM05D004229 ORTHO05D005468 6.4e-74 281.6 234 62.0
Manes.15G095600 Manihot esculenta HOM05D004229 ORTHO05D005468 6.4e-74 281.6 203 67.5
DCAR_006417 Daucus carota HOM05D004229 ORTHO05D005468 8.4e-74 281.2 203 67.5
FAN06G0297 Fragaria x ananassa HOM05D004229 ORTHO05D005468 8.4e-74 281.2 203 71.4
Cpa.g.sc1603.2 Carica papaya HOM05D004229 ORTHO05D005468 1.1e-73 280.8 203 68.5
Eucgr.G02865 Eucalyptus grandis HOM05D004229 ORTHO05D005468 1.4e-73 280.4 203 68.5
MD01G1103400 Malus domestica HOM05D004229 ORTHO05D005468 1.4e-73 280.4 203 69.5
Medtr1g094200 Medicago truncatula HOM05D004229 ORTHO05D005468 1.4e-73 280.4 203 67.0
RcHm_v2.0_Chr1g0362641 Rosa chinensis HOM05D004229 ORTHO05D005468 1.4e-73 280.4 203 70.9
Actinidia38868 Actinidia chinensis HOM05D004229 ORTHO05D005468 1.9e-73 280.0 203 68.5
Duzib114G0264 Durio zibethinus HOM05D004229 ORTHO05D005468 1.9e-73 280.0 234 62.0
Cfa001676 Carpinus fangiana HOM05D004229 ORTHO05D005468 2.4e-73 279.6 203 67.5
GSVIVG01016224001 Vitis vinifera HOM05D004229 ORTHO05D005468 2.4e-73 279.6 203 69.5
arahy.Tifrunner.gnm1.ann1.ET3M0C Arachis hypogaea HOM05D004229 ORTHO05D005468 3.2e-73 279.3 203 68.5
Glyma.10G208100 Glycine max HOM05D004229 ORTHO05D005468 3.2e-73 279.3 203 67.0
Potri.008G035600 Populus trichocarpa HOM05D004229 ORTHO05D005468 4.1e-73 278.9 203 68.5
Psat6g180120 Pisum sativum HOM05D004229 ORTHO05D005468 7.1e-73 278.1 203 65.5
Sabra08G0023800 Salix brachista HOM05D004229 ORTHO05D005468 1.6e-72 276.9 203 68.0
Thecc.10G082900 Theobroma cacao HOM05D004229 ORTHO05D005468 1.6e-72 276.9 234 61.5
VMungo1080G0141 Vigna mungo HOM05D004229 ORTHO05D005468 3.5e-72 275.8 203 66.0
Atru.chr12.837 Acer truncatum HOM05D004229 ORTHO05D005468 7.8e-72 274.6 203 70.0
Nn2g13792 Nelumbo nucifera HOM05D004229 ORTHO05D003832 1.0e-71 274.2 182 73.6
THA.LOC104826473 Tarenaya hassleriana HOM05D004229 ORTHO05D005468 1.3e-71 273.9 203 69.0
PSO339G0163 Papaver somniferum HOM05D004229 ORTHO05D005468 1.7e-71 273.5 203 67.5
Ciclev10031072m.g Citrus clementina HOM05D004229 ORTHO05D005468 2.3e-71 273.1 203 69.5
Haze_16858 Corylus avellana HOM05D004229 ORTHO05D005468 3.0e-71 272.7 211 65.4
Cc02_g10960 Coffea canephora HOM05D004229 ORTHO05D005468 3.9e-71 272.3 204 69.1
Phvul.005G180400 Phaseolus vulgaris HOM05D004229 ORTHO05D005468 3.9e-71 272.3 203 66.0
Ca_10545_v3 Cicer arietinum L. HOM05D004229 ORTHO05D005468 8.6e-71 271.2 203 65.0
PSO801G0085 Papaver somniferum HOM05D004229 ORTHO05D005468 8.6e-71 271.2 203 67.0
HPP92_008472 Vanilla planifolia HOM05D004229 ORTHO05D005468 2.5e-70 269.6 188 69.1
Sed0026489 Sechium edule HOM05D004229 ORTHO05D005468 3.3e-70 269.2 203 65.0
Lalb_Chr21g0313701 Lupinus albus HOM05D004229 ORTHO05D005468 5.6e-70 268.5 193 68.4
HPP92_008482 Vanilla planifolia HOM05D004229 ORTHO05D005468 5.6e-70 268.5 190 68.9
ClCG05G021220 Citrullus lanatus HOM05D004229 ORTHO05D005468 7.3e-70 268.1 203 65.0
TWI38G0761 Tripterygium wilfordii HOM05D004229 ORTHO05D005468 1.6e-69 266.9 203 65.0
BcaB01g00152 Brassica carinata HOM05D004229 ORTHO05D005468 2.8e-69 266.2 216 63.0
MELO3C012405.2 Cucumis melo HOM05D004229 ORTHO05D005468 2.8e-69 266.2 203 64.5
CsaV3_5G036050 Cucumis sativus L. HOM05D004229 ORTHO05D005468 2.8e-69 266.2 203 64.5
Hund24846 Selenicereus undatus HOM05D004229 ORTHO05D005468 3.6e-69 265.8 172 78.5
CDE09G0908 Ceratophyllum demersum HOM05D004229 ORTHO05D005468 4.7e-69 265.4 234 56.4
BcaC07g39772 Brassica carinata HOM05D004229 ORTHO05D005468 1.4e-68 263.8 216 62.5
BcaNung06953 Brassica carinata HOM05D004229 ORTHO05D005468 1.4e-68 263.8 216 62.5
A09p47800 Brassica napus HOM05D004229 ORTHO05D005468 1.4e-68 263.8 216 62.5
C08p30050 Brassica napus HOM05D004229 ORTHO05D005468 1.4e-68 263.8 216 62.5
BolC8t50614H Brassica oleracea HOM05D004229 ORTHO05D005468 1.4e-68 263.8 216 62.5
BraA09t40237Z Brassica rapa HOM05D004229 ORTHO05D005468 1.4e-68 263.8 216 62.5
Aa31sc141G10 Aethionema arabicum HOM05D004229 ORTHO05D005468 1.8e-68 263.5 194 67.0
QL08p054613 Quercus lobata HOM05D004229 ORTHO05D005468 1.8e-68 263.5 229 61.6
Thhalv10010229m.g Eutrema salsugineum HOM05D004229 ORTHO05D005468 2.4e-68 263.1 194 66.0
Migut.F01959 Erythranthe guttata HOM05D004229 ORTHO05D005468 3.1e-68 262.7 182 70.3
Carub.0005s2147 Capsella rubella HOM05D004229 ORTHO05D005468 5.2e-68 261.9 194 64.9
CAN.G694.36 Capsicum annuum HOM05D004229 ORTHO05D005468 5.2e-68 261.9 212 63.7
Sp5g07560 Schrenkiella parvula HOM05D004229 ORTHO05D005468 5.2e-68 261.9 194 65.5
FAN18G2159 Fragaria x ananassa HOM05D004229 ORTHO05D005468 1.2e-67 260.8 190 67.4
Oeu000792.2 Olea europaea HOM05D004229 ORTHO05D005468 1.5e-67 260.4 227 59.0
Os04g0223000 Oryza sativa ssp. japonica HOM05D004229 ORTHO05D005468 2.6e-67 259.6 190 67.4
Zm00001eb356850 Zea mays HOM05D004229 ORTHO05D005468 3.4e-67 259.2 190 67.4
MSTRG.27482 Avicennia marina HOM05D004229 ORTHO05D005468 9.9e-67 257.7 190 66.3
Aqoxy4G03296 Aquilegia oxysepala HOM05D004229 ORTHO05D005468 2.9e-66 256.1 203 65.0
AL5G35970 Arabidopsis lyrata HOM05D004229 ORTHO05D005468 2.9e-66 256.1 194 63.4
SGA_v2.0_scaffold62G21390 Striga asiatica HOM05D004229 ORTHO05D005468 4.9e-66 255.4 190 66.8
AT3G54860 Arabidopsis thaliana HOM05D004229 ORTHO05D005468 6.4e-66 255.0 194 63.4
ATR1132G004 Amborella trichopoda HOM05D004229 ORTHO05D005468 2.4e-65 253.1 204 62.3
Lj5g0013282 Lotus japonicus HOM05D004229 ORTHO05D005468 5.4e-65 251.9 224 59.8
Carub.0005s2206 Capsella rubella HOM05D004229 ORTHO05D005468 1.6e-64 250.4 192 64.1
CARHR164840 Cardamine hirsuta HOM05D004229 ORTHO05D005468 3.9e-63 245.7 197 62.4
Nitab4.5_0001760g0040 Nicotiana tabacum HOM05D004229 ORTHO05D005468 7.3e-62 241.5 216 59.7
Lsat_1_v5_gn_9_70141 Lactuca sativa HOM05D004229 ORTHO05D005468 1.8e-60 236.9 184 64.7
PSO170G6718 Papaver somniferum HOM05D004229 ORTHO05D005468 3.1e-60 236.1 186 62.9
SalBow4G2353 Salvia bowleyana HOM05D004229 ORTHO05D005468 6.9e-60 235.0 190 61.6
arahy.Tifrunner.gnm1.ann1.LJ1MV6 Arachis hypogaea HOM05D004229 ORTHO05D005468 1.5e-59 233.8 206 60.2
MD07G1170300 Malus domestica HOM05D004229 ORTHO05D005468 1.7e-58 230.3 179 64.8
SHI08894 Sapria himalayana HOM05D004229 ORTHO05D005468 1.7e-58 230.3 183 60.1
Nitab4.5_0000096g0310 Nicotiana tabacum HOM05D004229 ORTHO05D005468 1.6e-56 223.8 244 52.0
arahy.Tifrunner.gnm1.ann1.EYW761 Arachis hypogaea HOM05D004229 ORTHO05D005468 1.6e-53 213.8 157 66.9
SalBow4G2572 Salvia bowleyana HOM05D004229 ORTHO05D005468 3.7e-53 212.6 173 61.3
unitig_899.g14450 Utricularia gibba HOM05D004229 ORTHO05D005468 1.8e-52 210.3 210 55.7
AagrBONN_evm.TU.Sc2ySwM_344.2563 Anthoceros agrestis HOM05D004229 ORTHO05D005468 4.5e-51 205.7 191 52.9
arahy.Tifrunner.gnm1.ann1.I4EZ5E Arachis hypogaea HOM05D004229 ORTHO05D005468 4.2e-49 199.1 157 63.7
FAN13G1026 Fragaria x ananassa HOM05D004229 ORTHO05D005468 9.3e-49 198.0 190 56.3
FAN04G2411 Fragaria x ananassa HOM05D004229 ORTHO05D005468 1.2e-48 197.6 190 52.6
Mapoly0054s0015 Marchantia polymorpha HOM05D004229 ORTHO05D005468 3.0e-47 193.0 195 50.8
Pp3c17_5740 Physcomitrium patens HOM05D004229 ORTHO05D005468 3.3e-46 189.5 191 51.3
Sabra10G0174900 Salix brachista HOM05D004229 ORTHO05D005468 3.7e-45 186.0 146 62.3
QL08p054435 Quercus lobata HOM05D004229 ORTHO05D005468 4.8e-45 185.7 158 61.4
CBR_g52604 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-44 184.5 184 48.4
SMO358G0561 Selaginella moellendorffii HOM05D004229 ORTHO05D005468 7.6e-43 178.3 197 46.2
arahy.Tifrunner.gnm1.ann1.ED1Y34 Arachis hypogaea HOM05D004229 ORTHO05D005468 3.8e-42 176.0 116 70.7
FvH4_5g35750 Fragaria vesca HOM05D004229 ORTHO05D005468 2.5e-41 173.3 190 52.6
Potri.010G226600 Populus trichocarpa HOM05D004229 ORTHO05D005468 2.6e-35 153.3 114 66.7
ECA232G1554 Erigeron canadensis HOM05D004229 ORTHO05D005468 4.5e-35 152.5 93 74.2
SEGI_10422 Sequoiadendron giganteum HOM05D004229 ORTHO05D005468 5.9e-35 152.1 131 55.0
AUR62006787 Chenopodium quinoa HOM05D000047 ORTHO05D000044 2.2e-34 150.2 83 94.0
AUR62034335 Chenopodium quinoa HOM05D000047 ORTHO05D013845 1.1e-33 147.9 82 93.9
AUR62035178 Chenopodium quinoa HOM05D000047 ORTHO05D000044 3.2e-33 146.4 82 92.7
AUR62032038 Chenopodium quinoa HOM05D000047 ORTHO05D000044 9.3e-33 144.8 82 91.5
AUR62017371 Chenopodium quinoa HOM05D000047 ORTHO05D013845 4.6e-32 142.5 82 90.2
AUR62026393 Chenopodium quinoa HOM05D000047 ORTHO05D000044 4.6e-32 142.5 82 90.2
AUR62039536 Chenopodium quinoa HOM05D000047 ORTHO05D013845 1.4e-31 141.0 82 89.0
AUR62042501 Chenopodium quinoa HOM05D000047 ORTHO05D000044 1.4e-31 141.0 83 86.7
RcHm_v2.0_Chr6g0252451 Rosa chinensis HOM05D004229 ORTHO05D005468 8.8e-31 138.3 101 67.3
RcHm_v2.0_Chr7g0237401 Rosa chinensis HOM05D004229 ORTHO05D005468 8.8e-31 138.3 101 67.3
AUR62034807 Chenopodium quinoa HOM05D000047 ORTHO05D013845 2.5e-30 136.7 80 90.0
AUR62013980 Chenopodium quinoa HOM05D000047 ORTHO05D000044 2.2e-29 133.7 73 94.5
AUR62006516 Chenopodium quinoa HOM05D000047 ORTHO05D000044 3.7e-29 132.9 82 85.4
AUR62034228 Chenopodium quinoa HOM05D000047 ORTHO05D000044 4.8e-29 132.5 80 86.2
AUR62034946 Chenopodium quinoa HOM05D000047 ORTHO05D013845 1.8e-28 130.6 80 86.2
Cre12.g515550 Chlamydomonas reinhardtii HOM05D004229 ORTHO05D005468 2.4e-28 130.2 234 37.6
AUR62037438 Chenopodium quinoa HOM05D000047 ORTHO05D013845 3.4e-27 126.3 73 90.4
PRCOL_00000311 Prasinoderma coloniale HOM05D004229 ORTHO05D005468 7.2e-25 118.6 186 36.0
AUR62043304 Chenopodium quinoa HOM05D000047 ORTHO05D013845 3.0e-23 113.2 74 81.1
AUR62007892 Chenopodium quinoa HOM05D000047 ORTHO05D013845 5.1e-23 112.5 73 80.8
AUR62004795 Chenopodium quinoa HOM05D000047 ORTHO05D013845 2.0e-19 100.5 65 84.6
AUR62031633 Chenopodium quinoa HOM05D000047 ORTHO05D013845 5.9e-19 99.0 73 75.3
AUR62019640 Chenopodium quinoa HOM05D000047 ORTHO05D013845 3.8e-18 96.3 61 85.2
MBI09_g03431_MAGBIO Magnolia biondii HOM05D004229 ORTHO05D005468 2.7e-16 90.1 58 74.1
SGA_v2.0_scaffold20G09184 Striga asiatica HOM05D042722 ORTHO05D051393 1.0e-07 61.6 49 61.2
Rhsim05G0112700 Rhododendron simsii HOM05D000981 ORTHO05D000845 3.0e-07 60.1 84 42.9
AUR62036391 Chenopodium quinoa HOM05D000047 ORTHO05D013845 4.0e-07 59.7 81 43.2
QL01p017897 Quercus lobata HOM05D000047 ORTHO05D000044 8.8e-07 58.5 85 42.4
QL06p007831 Quercus lobata HOM05D000047 ORTHO05D000044 8.8e-07 58.5 85 42.4
QL07p017311 Quercus lobata HOM05D000047 ORTHO05D000044 8.8e-07 58.5 85 42.4
QL12p042854 Quercus lobata HOM05D000047 ORTHO05D000044 8.8e-07 58.5 85 42.4
QL93p0305_0012 Quercus lobata HOM05D000047 ORTHO05D000044 1.5e-06 57.8 85 42.4
QL04p030580 Quercus lobata HOM05D000047 ORTHO05D000044 2.0e-06 57.4 85 42.4
QL05p044848 Quercus lobata HOM05D000047 ORTHO05D000044 2.6e-06 57.0 85 41.2
QL06p019599 Quercus lobata HOM05D000047 ORTHO05D000044 5.7e-06 55.8 85 41.2
QL07p033814 Quercus lobata HOM05D000047 ORTHO05D000044 5.7e-06 55.8 85 41.2
QL93p0181_0006 Quercus lobata HOM05D000047 ORTHO05D000044 5.7e-06 55.8 85 41.2


User provided reference genes

Program Settings