Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62040894 Chenopodium quinoa HOM05D004147 ORTHO05D005606 3.0e-154 548.5 284 100.0
Hund19733 Selenicereus undatus HOM05D004147 ORTHO05D005606 3.3e-145 518.5 274 93.8
EL10Ac4g10393 Beta vulgaris HOM05D004147 ORTHO05D005606 2.4e-143 512.3 285 91.9
AUR62042623 Chenopodium quinoa HOM05D004147 ORTHO05D005606 1.0e-141 506.9 309 85.8
Sc09g0002150 Simmondsia chinensis HOM05D004147 ORTHO05D005606 2.5e-137 492.3 274 88.3
Ah.04g161370 Amaranthus hybridus HOM05D004147 ORTHO05D005606 3.3e-137 491.9 282 89.7
Phvul.002G101600 Phaseolus vulgaris HOM05D004147 ORTHO05D005606 2.2e-136 489.2 283 88.3
VMungo0251G0902 Vigna mungo HOM05D004147 ORTHO05D005606 6.3e-136 487.6 283 88.0
Glyma.07G225200 Glycine max HOM05D004147 ORTHO05D005606 2.6e-134 482.3 274 86.9
Glyma.20G025100 Glycine max HOM05D004147 ORTHO05D005606 3.4e-134 481.9 274 86.9
Dinv06248 Davidia involucrata HOM05D004147 ORTHO05D005606 4.5e-134 481.5 274 87.2
Dinv15522 Davidia involucrata HOM05D004147 ORTHO05D005606 4.5e-134 481.5 274 87.2
Lj4g0017588 Lotus japonicus HOM05D004147 ORTHO05D005606 7.7e-134 480.7 275 87.6
QL01p007763 Quercus lobata HOM05D004147 ORTHO05D005606 7.7e-134 480.7 273 86.1
FvH4_3g46070 Fragaria vesca HOM05D004147 ORTHO05D005606 1.0e-133 480.3 275 86.5
Thecc.09G206400 Theobroma cacao HOM05D004147 ORTHO05D005606 1.0e-133 480.3 274 86.5
Ca_18795_v3 Cicer arietinum L. HOM05D004147 ORTHO05D005606 1.3e-133 479.9 273 86.8
COL.COLO4_35060 Corchorus olitorius HOM05D004147 ORTHO05D005606 1.7e-133 479.6 274 86.1
MD03G1000100 Malus domestica HOM05D004147 ORTHO05D005606 6.5e-133 477.6 274 85.4
CANSAT35G0441 Cannabis sativa HOM05D004147 ORTHO05D005606 1.1e-132 476.9 274 85.4
PGR102G2115 Punica granatum HOM05D004147 ORTHO05D005606 1.1e-132 476.9 274 85.0
Prupe.6G000600 Prunus persica HOM05D004147 ORTHO05D005606 1.9e-132 476.1 275 86.2
Oeu023957.1 Olea europaea HOM05D004147 ORTHO05D005606 2.5e-132 475.7 274 86.1
TPR.G34051 Trifolium pratense HOM05D004147 ORTHO05D005606 2.5e-132 475.7 273 85.7
Gohir.D05G000800 Gossypium hirsutum HOM05D004147 ORTHO05D005606 7.2e-132 474.2 284 83.5
Atru.chr3.2044 Acer truncatum HOM05D004147 ORTHO05D005606 1.2e-131 473.4 276 85.1
MD11G1000500 Malus domestica HOM05D004147 ORTHO05D005606 1.2e-131 473.4 274 85.8
Gohir.A05G000500 Gossypium hirsutum HOM05D004147 ORTHO05D005606 1.6e-131 473.0 284 83.5
Ciclev10016090m.g Citrus clementina HOM05D004147 ORTHO05D005606 2.7e-131 472.2 274 84.7
Duzib150G1508 Durio zibethinus HOM05D004147 ORTHO05D005606 2.7e-131 472.2 274 85.8
Nn2g15911 Nelumbo nucifera HOM05D004147 ORTHO05D005606 2.7e-131 472.2 274 85.0
CSS0011494 Camellia sinensis var. sinensis HOM05D004147 ORTHO05D005606 7.9e-131 470.7 275 85.8
Gohir.D03G147100 Gossypium hirsutum HOM05D004147 ORTHO05D005606 1.0e-130 470.3 274 85.4
Medtr4g083230 Medicago truncatula HOM05D004147 ORTHO05D005606 1.4e-130 469.9 273 85.7
Potri.003G224000 Populus trichocarpa HOM05D004147 ORTHO05D005606 1.4e-130 469.9 276 84.8
CsaV3_1G041490 Cucumis sativus L. HOM05D004147 ORTHO05D005606 2.3e-130 469.2 274 83.6
Dinv09765 Davidia involucrata HOM05D004147 ORTHO05D005606 2.3e-130 469.2 274 85.0
Lalb_Chr09g0328961 Lupinus albus HOM05D004147 ORTHO05D005606 3.0e-130 468.8 274 85.8
Sopen01g025520 Solanum pennellii HOM05D004147 ORTHO05D005606 3.9e-130 468.4 274 84.7
MELO3C015560.2 Cucumis melo HOM05D004147 ORTHO05D005606 5.1e-130 468.0 274 83.2
Lalb_Chr16g0385471 Lupinus albus HOM05D004147 ORTHO05D005606 1.1e-129 466.8 274 84.3
arahy.Tifrunner.gnm1.ann1.41N8FB Arachis hypogaea HOM05D004147 ORTHO05D005606 2.0e-129 466.1 274 83.9
arahy.Tifrunner.gnm1.ann1.JJ8YPF Arachis hypogaea HOM05D004147 ORTHO05D005606 2.0e-129 466.1 274 83.9
CiPaw.13G180000 Carya illinoinensis HOM05D004147 ORTHO05D005606 2.6e-129 465.7 274 83.9
Migut.N00528 Erythranthe guttata HOM05D004147 ORTHO05D005606 2.6e-129 465.7 274 83.6
Cpa.g.sc119.7 Carica papaya HOM05D004147 ORTHO05D005606 4.4e-129 464.9 274 83.6
FAN11G3393 Fragaria x ananassa HOM05D004147 ORTHO05D005606 7.4e-129 464.2 301 78.7
Gorai.003G154600 Gossypium raimondii HOM05D004147 ORTHO05D005606 9.7e-129 463.8 275 84.7
Gohir.A03G021600 Gossypium hirsutum HOM05D004147 ORTHO05D005606 1.3e-128 463.4 275 84.4
Duzib170G0806 Durio zibethinus HOM05D004147 ORTHO05D005606 4.8e-128 461.5 273 84.2
Potri.001G000700 Populus trichocarpa HOM05D004147 ORTHO05D005606 4.8e-128 461.5 277 83.8
TAR623G0988 Trochodendron aralioides HOM05D004147 ORTHO05D005606 6.3e-128 461.1 274 83.6
CAN.G1941.2 Capsicum annuum HOM05D004147 ORTHO05D005606 8.2e-128 460.7 274 83.9
FAN16G1044 Fragaria x ananassa HOM05D004147 ORTHO05D005606 1.8e-127 459.5 306 76.8
Sc16g0009630 Simmondsia chinensis HOM05D004147 ORTHO05D005606 2.4e-127 459.1 274 82.8
MSTRG.5958 Avicennia marina HOM05D004147 ORTHO05D005606 4.1e-127 458.4 273 81.0
TAR633G2501 Trochodendron aralioides HOM05D004147 ORTHO05D005606 4.1e-127 458.4 274 82.1
Cc01_g00350 Coffea canephora HOM05D004147 ORTHO05D005606 9.1e-127 457.2 284 82.7
RcHm_v2.0_Chr5g0084131 Rosa chinensis HOM05D004147 ORTHO05D005606 1.5e-126 456.4 274 82.8
TWI34G0273 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 2.6e-126 455.7 282 80.5
TWI32G0854 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 5.9e-126 454.5 274 82.5
TWI60G0666 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 1.0e-125 453.8 274 81.4
MBI19_g24069_MAGBIO Magnolia biondii HOM05D004147 ORTHO05D005606 2.2e-125 452.6 268 82.5
MSTRG.19397 Avicennia marina HOM05D004147 ORTHO05D005606 5.0e-125 451.4 274 81.4
DCAR_001959 Daucus carota HOM05D004147 ORTHO05D005606 1.5e-124 449.9 274 81.4
Rhsim13G0235300 Rhododendron simsii HOM05D004147 ORTHO05D005606 3.2e-124 448.7 317 73.5
Thhalv10017021m.g Eutrema salsugineum HOM05D004147 ORTHO05D005606 9.4e-124 447.2 274 80.7
Aqoxy2G00002 Aquilegia oxysepala HOM05D004147 ORTHO05D005606 2.1e-123 446.0 290 77.6
Eucgr.J01722 Eucalyptus grandis HOM05D004147 ORTHO05D005606 2.1e-123 446.0 276 81.5
Hma1.2p1_0589F.1_g184660 Hydrangea macrophylla HOM05D004147 ORTHO05D005606 2.1e-123 446.0 292 77.1
FAN21G1018 Fragaria x ananassa HOM05D004147 ORTHO05D005606 2.7e-123 445.7 280 81.1
CARHR125880 Cardamine hirsuta HOM05D004147 ORTHO05D005606 3.0e-122 442.2 274 78.8
ClCG03G014680 Citrullus lanatus HOM05D004147 ORTHO05D005606 3.0e-122 442.2 274 80.3
Sp4g14490 Schrenkiella parvula HOM05D004147 ORTHO05D005606 5.2e-122 441.4 274 79.2
Sed0000702 Sechium edule HOM05D004147 ORTHO05D005606 6.7e-122 441.0 274 78.1
Aa31LG5G4940 Aethionema arabicum HOM05D004147 ORTHO05D005606 9.7e-121 437.2 298 74.2
BraA05t20280Z Brassica rapa HOM05D004147 ORTHO05D005606 1.7e-120 436.4 275 78.2
SGA_v2.0_scaffold3G01703 Striga asiatica HOM05D004147 ORTHO05D005606 1.7e-120 436.4 274 80.3
ECA238G2098 Erigeron canadensis HOM05D004147 ORTHO05D005606 2.2e-120 436.0 283 79.2
PSO339G2679 Papaver somniferum HOM05D004147 ORTHO05D005606 2.2e-120 436.0 272 80.1
HanXRQChr14g0437101 Helianthus annuus HOM05D004147 ORTHO05D005606 2.8e-120 435.6 292 78.4
PSO384G4999 Papaver somniferum HOM05D004147 ORTHO05D005606 3.7e-120 435.3 272 79.8
A05p13420 Brassica napus HOM05D004147 ORTHO05D005606 4.8e-120 434.9 275 78.9
C04p17540 Brassica napus HOM05D004147 ORTHO05D005606 4.8e-120 434.9 275 77.8
BolC4t23301H Brassica oleracea HOM05D004147 ORTHO05D005606 4.8e-120 434.9 275 77.8
SGA_v2.0_scaffold6G03333 Striga asiatica HOM05D000201 ORTHO05D005606 4.8e-120 434.9 311 71.4
Carub.0004s1343 Capsella rubella HOM05D004147 ORTHO05D005606 6.3e-120 434.5 274 78.1
PSO675G6472 Papaver somniferum HOM05D004147 ORTHO05D005606 8.2e-120 434.1 278 79.1
ATR0068G003 Amborella trichopoda HOM05D004147 ORTHO05D005606 1.1e-119 433.7 274 77.7
PSO541G5718 Papaver somniferum HOM05D004147 ORTHO05D005606 1.1e-119 433.7 278 79.1
Haze_22914 Corylus avellana HOM05D004147 ORTHO05D005606 9.1e-119 430.6 298 75.5
AT2G32080 Arabidopsis thaliana HOM05D004147 ORTHO05D005606 1.6e-118 429.9 274 78.5
Actinidia16222 Actinidia chinensis HOM05D000201 ORTHO05D001601 2.0e-118 429.5 247 85.8
vmacro04279 Vaccinium macrocarpon HOM05D004147 ORTHO05D005606 2.0e-118 429.5 306 75.2
Peaxi162Scf01181g00019 Petunia axillaris HOM05D004147 ORTHO05D005606 4.5e-118 428.3 311 73.3
CDE09G0171 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.7e-117 426.4 265 76.6
HPP92_018009 Vanilla planifolia HOM05D004147 ORTHO05D005606 2.2e-117 426.0 276 76.1
GSVIVG01025513001 Vitis vinifera HOM05D004147 ORTHO05D005606 5.0e-117 424.9 274 79.2
AL103U10050 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 1.1e-116 423.7 274 77.7
AL4G27460 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 1.1e-116 423.7 274 77.7
Sabra01G0000600 Salix brachista HOM05D004147 ORTHO05D005606 3.6e-115 418.7 314 71.3
SalBow3G0983 Salvia bowleyana HOM05D004147 ORTHO05D005606 8.8e-114 414.1 281 76.2
Zm00001eb127970 Zea mays HOM05D004147 ORTHO05D005606 5.7e-113 411.4 277 74.0
CDE04G0726 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 7.5e-113 411.0 274 73.4
Zm00001eb333400 Zea mays HOM05D004147 ORTHO05D005606 7.5e-113 411.0 277 74.0
Os01g0260700 Oryza sativa ssp. japonica HOM05D004147 ORTHO05D005606 2.2e-112 409.5 277 74.0
Manes.15G111500 Manihot esculenta HOM05D004147 ORTHO05D005606 4.7e-107 391.7 226 85.4
Psat7g134480 Pisum sativum HOM05D004147 ORTHO05D005606 4.0e-106 388.7 223 85.7
CDE02G2463 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 8.3e-104 380.9 265 69.8
Sed0015400 Sechium edule HOM05D004147 ORTHO05D005606 2.7e-102 375.9 224 79.9
CAN.G281.7 Capsicum annuum HOM05D004147 ORTHO05D005606 2.3e-98 362.8 274 71.5
Nitab4.5_0000075g0060 Nicotiana tabacum HOM05D004147 ORTHO05D005606 8.9e-98 360.9 276 69.9
Nitab4.5_0000890g0080 Nicotiana tabacum HOM05D004147 ORTHO05D005606 8.9e-98 360.9 276 69.9
Lsat_1_v5_gn_2_50601 Lactuca sativa HOM05D004147 ORTHO05D005606 1.7e-96 356.7 276 69.2
CDE08G0894 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 2.0e-94 349.7 240 72.1
unitig_62.g23531 Utricularia gibba HOM05D004147 ORTHO05D005606 1.7e-93 346.7 256 69.1
TAR623G0822 Trochodendron aralioides HOM05D004147 ORTHO05D005606 5.8e-89 331.6 206 80.6
BcaB02g10449 Brassica carinata HOM05D004147 ORTHO05D005606 2.4e-87 326.2 213 77.5
CDE02G0470 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 7.8e-86 321.2 247 65.6
AagrBONN_evm.TU.Sc2ySwM_368.1732 Anthoceros agrestis HOM05D004147 ORTHO05D005606 3.9e-85 318.9 282 59.9
Pp3c14_13490 Physcomitrium patens HOM05D004147 ORTHO05D005606 2.5e-84 316.2 280 59.6
Pp3c17_4780 Physcomitrium patens HOM05D004147 ORTHO05D005606 4.3e-84 315.5 288 57.6
Nn7g35773 Nelumbo nucifera HOM05D004147 ORTHO05D005606 1.6e-83 313.5 175 86.3
CDE08G0994 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 2.6e-81 306.2 215 69.8
SEGI_18063 Sequoiadendron giganteum HOM05D004147 ORTHO05D005606 7.5e-81 304.7 259 60.6
CBR_g3650 Chara braunii HOM05D004147 ORTHO05D005606 8.3e-80 301.2 293 55.3
Actinidia00922 Actinidia chinensis HOM05D004147 ORTHO05D005606 1.6e-78 297.0 191 78.0
Sabra03G0166400 Salix brachista HOM05D004147 ORTHO05D005606 1.3e-77 293.9 182 81.9
Solyc01g049680.3 Solanum lycopersicum HOM05D004147 ORTHO05D005606 1.2e-73 280.8 182 76.9
SMO164G0008 Selaginella moellendorffii HOM05D004147 ORTHO05D005606 1.7e-72 276.9 264 55.3
Lj1A564T30 Lonicera japonica HOM05D004147 ORTHO05D005606 1.6e-67 260.4 246 60.6
unitig_52.g17528 Utricularia gibba HOM05D004147 ORTHO05D005606 2.7e-62 243.0 191 66.0
Gorai.009G000700 Gossypium raimondii HOM05D004147 ORTHO05D005606 1.1e-58 231.1 148 79.7
Solyc01g049690.4 Solanum lycopersicum HOM05D004147 ORTHO05D005606 2.4e-47 193.4 105 93.3
Gorai.009G000600 Gossypium raimondii HOM05D004147 ORTHO05D005606 3.5e-46 189.5 106 84.9
HPP92_026678 Vanilla planifolia HOM05D004147 ORTHO05D005606 6.0e-46 188.7 104 85.6
Sabra01G0000400 Salix brachista HOM05D004147 ORTHO05D005606 9.0e-42 174.9 117 76.9
CAN.G640.3 Capsicum annuum HOM05D004147 ORTHO05D005606 2.6e-41 173.3 95 86.3
CAN.G678.10 Capsicum annuum HOM05D004147 ORTHO05D005606 2.9e-40 169.9 104 80.8
Potri.013G061100 Populus trichocarpa HOM05D004147 ORTHO05D005606 2.7e-38 163.3 261 39.5
Lj1A564T31 Lonicera japonica HOM05D004147 ORTHO05D005606 3.5e-38 162.9 136 65.4
FAN25G3109 Fragaria x ananassa HOM05D004147 ORTHO05D005606 9.6e-36 154.8 78 93.6
PRCOL_00001079 Prasinoderma coloniale HOM05D004147 ORTHO05D005606 4.1e-34 149.4 268 32.8
unitig_52.g17527 Utricularia gibba HOM05D004147 ORTHO05D005606 1.2e-33 147.9 77 89.6
MBI05_g14947_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D002599 2.6e-33 146.7 95 77.9
Sabra01G0000300 Salix brachista HOM05D004147 ORTHO05D005606 7.2e-31 138.7 83 80.7
Lsat_1_v5_gn_4_94280 Lactuca sativa HOM05D004147 ORTHO05D005606 5.1e-29 132.5 219 40.2
C08p28370 Brassica napus HOM05D004147 ORTHO05D021856 9.7e-28 128.3 119 63.0
BolC8t50447H Brassica oleracea HOM05D004147 ORTHO05D021856 9.7e-28 128.3 119 63.0
Cre06.g278208 Chlamydomonas reinhardtii HOM05D004147 ORTHO05D005606 9.7e-28 128.3 249 32.1
BolC2t11193H Brassica oleracea HOM05D004147 ORTHO05D005606 8.2e-27 125.2 119 62.2
BcaC03g17178 Brassica carinata HOM05D004147 ORTHO05D021856 1.8e-26 124.0 106 66.0
Oeu023697.1 Olea europaea HOM05D004147 ORTHO05D005606 6.9e-26 122.1 66 86.4
A03p64870 Brassica napus HOM05D004147 ORTHO05D005606 3.4e-25 119.8 119 60.5
C02p30750 Brassica napus HOM05D004147 ORTHO05D021856 3.4e-25 119.8 119 60.5
BraA03t15549Z Brassica rapa HOM05D004147 ORTHO05D018802 3.4e-25 119.8 119 60.5
BolC5t32093H Brassica oleracea HOM05D004147 ORTHO05D021856 4.5e-25 119.4 119 60.5
TWI32G1322 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 2.9e-24 116.7 259 31.7
C05p33620 Brassica napus HOM05D004147 ORTHO05D021856 5.0e-24 115.9 119 59.7
BcaC07g39671 Brassica carinata HOM05D004147 ORTHO05D005606 3.3e-20 103.2 88 62.5
BraA05t19995Z Brassica rapa HOM05D004147 ORTHO05D018802 4.3e-20 102.8 156 40.4
BraA09t36212Z Brassica rapa HOM05D004147 ORTHO05D018802 6.3e-19 99.0 84 64.3
BcaC07g38232 Brassica carinata HOM05D004147 ORTHO05D005606 2.4e-18 97.1 88 60.2
TAR623G1050 Trochodendron aralioides HOM05D004147 ORTHO05D005606 2.9e-16 90.1 45 97.8
HanXRQChr10g0307541 Helianthus annuus HOM05D004147 ORTHO05D005606 1.4e-13 81.3 46 78.3
Lsat_1_v5_gn_8_97821 Lactuca sativa HOM05D004147 ORTHO05D005606 6.7e-13 79.0 51 74.5


User provided reference genes

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