Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62040779 Chenopodium quinoa HOM05D004159 ORTHO05D005858 0.0e+00 1163.3 585 100.0
AUR62040778 Chenopodium quinoa HOM05D004159 ORTHO05D005858 1.6e-298 1028.9 547 94.7
AUR62029204 Chenopodium quinoa HOM05D004159 ORTHO05D005858 4.4e-269 931.0 517 90.7
EL10Ac8g19455 Beta vulgaris HOM05D004159 ORTHO05D005858 7.3e-264 913.7 517 86.3
Ah.09g231680 Amaranthus hybridus HOM05D004159 ORTHO05D005858 7.1e-243 844.0 546 77.5
Hund22314 Selenicereus undatus HOM05D004159 ORTHO05D005858 7.9e-226 787.3 521 73.7
Actinidia09406 Actinidia chinensis HOM05D004159 ORTHO05D005858 4.2e-219 765.0 592 65.5
CSS0048893 Camellia sinensis var. sinensis HOM05D004159 ORTHO05D005858 1.6e-218 763.1 537 69.1
Nn3g16747 Nelumbo nucifera HOM05D004159 ORTHO05D005858 4.6e-218 761.5 538 69.5
TAR371G0318 Trochodendron aralioides HOM05D004159 ORTHO05D005858 4.6e-218 761.5 533 69.2
GSVIVG01032412001 Vitis vinifera HOM05D004159 ORTHO05D005858 6.1e-218 761.1 523 70.7
Rhsim10G0017800 Rhododendron simsii HOM05D004159 ORTHO05D005858 1.8e-217 759.6 579 65.8
TAR629G3285 Trochodendron aralioides HOM05D004159 ORTHO05D005858 2.5e-216 755.7 533 68.3
Peaxi162Scf00700g00427 Petunia axillaris HOM05D004159 ORTHO05D005858 2.4e-214 749.2 514 70.4
Cc07_g01750 Coffea canephora HOM05D004159 ORTHO05D005858 3.1e-214 748.8 550 67.6
Lj7C599T6 Lonicera japonica HOM05D004159 ORTHO05D005858 1.5e-213 746.5 522 69.9
PGR142G2553 Punica granatum HOM05D004159 ORTHO05D005858 7.7e-213 744.2 526 68.6
MBI16_g23841_MAGBIO Magnolia biondii HOM05D004159 ORTHO05D005858 1.0e-212 743.8 562 66.2
Eucgr.I01748 Eucalyptus grandis HOM05D004159 ORTHO05D005858 5.0e-212 741.5 590 62.9
Os03g0699200 Oryza sativa ssp. japonica HOM05D004159 ORTHO05D005858 1.1e-211 740.3 538 66.4
Cfa007372 Carpinus fangiana HOM05D004159 ORTHO05D005858 7.2e-211 737.6 548 66.8
Haze_14736 Corylus avellana HOM05D004159 ORTHO05D005858 6.1e-210 734.6 562 64.9
CANSAT64G2890 Cannabis sativa HOM05D004159 ORTHO05D005858 7.9e-210 734.2 520 68.5
Solyc07g047670.3 Solanum lycopersicum HOM05D004159 ORTHO05D005858 1.4e-209 733.4 566 63.8
vmacro05861 Vaccinium macrocarpon HOM05D004159 ORTHO05D005858 3.0e-209 732.3 570 64.7
CiPaw.03G043300 Carya illinoinensis HOM05D004159 ORTHO05D005858 1.5e-208 729.9 598 61.2
Potri.004G121400 Populus trichocarpa HOM05D004159 ORTHO05D005858 1.5e-208 729.9 520 67.5
Hma1.2p1_0078F.1_g040070 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 2.0e-208 729.6 560 64.8
Zm00001eb053960 Zea mays HOM05D004159 ORTHO05D005858 5.7e-208 728.0 554 65.0
CiPaw.04G028300 Carya illinoinensis HOM05D004159 ORTHO05D005858 3.7e-207 725.3 538 66.7
TWI56G0312 Tripterygium wilfordii HOM05D004159 ORTHO05D005858 3.7e-207 725.3 540 66.5
PGSC0003DMG400006122 Solanum tuberosum HOM05D004159 ORTHO05D005858 8.2e-207 724.2 584 63.0
THA.LOC104824006 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 1.4e-206 723.4 526 67.9
VMungo0720G1997 Vigna mungo HOM05D004159 ORTHO05D005858 4.1e-206 721.8 526 67.1
Thhalv10013046m.g Eutrema salsugineum HOM05D004159 ORTHO05D005858 9.1e-206 720.7 547 64.2
CDE07G0971 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 1.2e-205 720.3 526 67.1
HanXRQChr04g0114031 Helianthus annuus HOM05D004159 ORTHO05D005858 1.2e-205 720.3 511 67.9
QL02p074797 Quercus lobata HOM05D004159 ORTHO05D005858 2.6e-205 719.2 531 65.3
Sp6g29490 Schrenkiella parvula HOM05D004159 ORTHO05D005858 2.6e-205 719.2 528 66.3
Sabra04G0067000 Salix brachista HOM05D004159 ORTHO05D005858 5.9e-205 718.0 520 66.0
CAN.G1819.1 Capsicum annuum HOM05D004159 ORTHO05D005858 7.7e-205 717.6 525 67.4
AT5G14520 Arabidopsis thaliana HOM05D004159 ORTHO05D005858 6.5e-204 714.5 528 65.7
AL6G25270 Arabidopsis lyrata HOM05D004159 ORTHO05D005858 8.5e-204 714.1 546 63.9
Phvul.007G070900 Phaseolus vulgaris HOM05D004159 ORTHO05D005858 8.5e-204 714.1 588 60.5
ECA240G1354 Erigeron canadensis HOM05D004159 ORTHO05D005858 1.1e-203 713.8 523 66.2
ClCG01G013750 Citrullus lanatus HOM05D004159 ORTHO05D005858 1.4e-203 713.4 518 67.4
Nitab4.5_0006221g0020 Nicotiana tabacum HOM05D004159 ORTHO05D005858 1.4e-203 713.4 542 64.9
arahy.Tifrunner.gnm1.ann1.M4LD34 Arachis hypogaea HOM05D004159 ORTHO05D005858 1.9e-203 713.0 539 64.4
MSTRG.20029 Avicennia marina HOM05D004159 ORTHO05D005858 1.9e-203 713.0 525 67.6
BcaB01g05107 Brassica carinata HOM05D004159 ORTHO05D005858 2.5e-203 712.6 547 64.7
Lsat_1_v5_gn_2_51000 Lactuca sativa HOM05D004159 ORTHO05D005858 4.2e-203 711.8 507 67.7
HanXRQChr14g0462651 Helianthus annuus HOM05D004159 ORTHO05D005858 1.2e-202 710.3 508 66.9
MD09G1027600 Malus domestica HOM05D004159 ORTHO05D005858 1.2e-202 710.3 533 65.3
Aqoxy5G03802 Aquilegia oxysepala HOM05D004159 ORTHO05D005858 1.6e-202 709.9 523 65.8
Gohir.A07G222900 Gossypium hirsutum HOM05D004159 ORTHO05D005858 2.1e-202 709.5 545 64.4
Sed0001839 Sechium edule HOM05D004159 ORTHO05D005858 2.1e-202 709.5 519 66.5
BolC3t13270H Brassica oleracea HOM05D004159 ORTHO05D005858 6.1e-202 708.0 548 64.6
CARHR198790 Cardamine hirsuta HOM05D004159 ORTHO05D005858 6.1e-202 708.0 557 62.8
MD17G1027600 Malus domestica HOM05D004159 ORTHO05D005858 6.1e-202 708.0 584 60.6
C03p07700 Brassica napus HOM05D004159 ORTHO05D005858 8.0e-202 707.6 548 64.8
BraA03t10001Z Brassica rapa HOM05D004159 ORTHO05D005858 8.0e-202 707.6 511 68.1
Gorai.001G264700 Gossypium raimondii HOM05D004159 ORTHO05D005858 1.0e-201 707.2 545 64.4
Gohir.D07G229600 Gossypium hirsutum HOM05D004159 ORTHO05D005858 2.3e-201 706.1 545 64.4
A03p06670 Brassica napus HOM05D004159 ORTHO05D005858 5.2e-201 704.9 511 67.7
Glyma.19G232500 Glycine max HOM05D004159 ORTHO05D005858 6.7e-201 704.5 585 60.3
Manes.17G112500 Manihot esculenta HOM05D004159 ORTHO05D005858 6.7e-201 704.5 524 65.1
PSO017G2175 Papaver somniferum HOM05D004159 ORTHO05D005858 8.8e-201 704.1 506 66.2
Sed0003581 Sechium edule HOM05D004159 ORTHO05D005858 1.5e-200 703.4 519 65.9
Lj1g0017236 Lotus japonicus HOM05D004159 ORTHO05D005858 7.4e-200 701.0 527 65.1
Thecc.04G016700 Theobroma cacao HOM05D004159 ORTHO05D005858 7.4e-200 701.0 537 65.0
DCAR_021719 Daucus carota HOM05D004159 ORTHO05D005858 1.7e-199 699.9 539 65.3
Duzib264G0191 Durio zibethinus HOM05D004159 ORTHO05D005858 1.7e-199 699.9 515 66.6
Glyma.03G234900 Glycine max HOM05D004159 ORTHO05D005858 2.8e-199 699.1 526 64.4
LjContig00272g0012452 Lotus japonicus HOM05D004159 ORTHO05D005858 2.8e-199 699.1 527 64.9
SGA_v2.0_scaffold32G13248 Striga asiatica HOM05D004159 ORTHO05D005858 2.8e-199 699.1 523 66.9
Nitab4.5_0003930g0060 Nicotiana tabacum HOM05D004159 ORTHO05D005858 3.7e-199 698.7 565 62.5
Aa31LG11G15290 Aethionema arabicum HOM05D004159 ORTHO05D005858 4.8e-199 698.4 492 68.1
Prupe.3G291100 Prunus persica HOM05D004159 ORTHO05D005858 4.8e-199 698.4 530 64.0
Atru.chr6.2388 Acer truncatum HOM05D004159 ORTHO05D005858 1.8e-198 696.4 507 67.3
ATR1132G032 Amborella trichopoda HOM05D004159 ORTHO05D005858 2.4e-198 696.0 524 63.5
Duzib187G0134 Durio zibethinus HOM05D004159 ORTHO05D005858 3.1e-198 695.7 532 64.7
Ciclev10014699m.g Citrus clementina HOM05D004159 ORTHO05D005858 7.0e-198 694.5 538 63.9
THA.LOC104822401 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 1.2e-197 693.7 516 66.1
COL.COLO4_29105 Corchorus olitorius HOM05D004159 ORTHO05D005858 2.6e-197 692.6 509 66.6
Cpa.g.sc108.65 Carica papaya HOM05D004159 ORTHO05D005858 4.5e-197 691.8 537 63.7
Migut.N01406 Erythranthe guttata HOM05D004159 ORTHO05D005858 1.3e-196 690.3 570 62.5
Lalb_Chr06g0175751 Lupinus albus HOM05D004159 ORTHO05D005858 5.0e-196 688.3 540 62.2
Migut.B00156 Erythranthe guttata HOM05D004159 ORTHO05D005858 6.5e-196 688.0 573 61.6
Lalb_Chr02g0160481 Lupinus albus HOM05D004159 ORTHO05D005858 1.1e-195 687.2 525 63.8
Medtr7g100040 Medicago truncatula HOM05D004159 ORTHO05D005858 4.7e-194 681.8 567 60.3
PSO764G0137 Papaver somniferum HOM05D004159 ORTHO05D005858 8.0e-194 681.0 513 63.5
CsaV3_1G014060 Cucumis sativus L. HOM05D004159 ORTHO05D005858 8.8e-193 677.6 516 64.9
Carub.0006s1270 Capsella rubella HOM05D004159 ORTHO05D005858 1.2e-192 677.2 511 64.6
MELO3C004873.2 Cucumis melo HOM05D004159 ORTHO05D005858 2.0e-192 676.4 547 62.5
Psat0s1782g0040 Pisum sativum HOM05D004159 ORTHO05D005858 4.4e-192 675.2 570 60.9
Ca_26485_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 3.7e-191 672.2 526 64.4
SalBow6G0855 Salvia bowleyana HOM05D004159 ORTHO05D005858 6.3e-191 671.4 517 64.4
TPR.G1071 Trifolium pratense HOM05D004159 ORTHO05D005858 2.0e-189 666.4 576 59.4
Oeu048622.3 Olea europaea HOM05D004159 ORTHO05D005858 1.5e-187 660.2 502 63.7
unitig_21.g20810 Utricularia gibba HOM05D004159 ORTHO05D005858 1.6e-186 656.8 522 64.2
Prupe.8G015200 Prunus persica HOM05D004159 ORTHO05D005858 8.0e-186 654.4 524 61.3
RcHm_v2.0_Chr5g0047391 Rosa chinensis HOM05D004159 ORTHO05D005858 8.0e-186 654.4 516 63.2
Prupe.8G015700 Prunus persica HOM05D004159 ORTHO05D005858 5.2e-185 651.7 524 61.1
Dinv33444 Davidia involucrata HOM05D004159 ORTHO05D005858 4.4e-184 648.7 525 63.6
FAN25G3844 Fragaria x ananassa HOM05D004159 ORTHO05D005858 5.7e-184 648.3 519 63.4
CDE06G0546 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 3.7e-183 645.6 628 55.4
FvH4_3g26080 Fragaria vesca HOM05D004159 ORTHO05D005858 3.7e-183 645.6 519 62.8
FAN11G1291 Fragaria x ananassa HOM05D004159 ORTHO05D005858 3.7e-183 645.6 519 62.8
FAN16G1867 Fragaria x ananassa HOM05D004159 ORTHO05D005858 1.2e-181 640.6 521 62.6
FAN21G3616 Fragaria x ananassa HOM05D004159 ORTHO05D005858 5.0e-180 635.2 519 62.2
Lsat_1_v5_gn_4_179560 Lactuca sativa HOM05D004159 ORTHO05D005858 5.0e-180 635.2 512 61.1
SEGI_02382 Sequoiadendron giganteum HOM05D004159 ORTHO05D005858 6.1e-178 628.2 596 54.5
PSO478G0945 Papaver somniferum HOM05D004159 ORTHO05D005858 4.4e-176 622.1 506 60.7
ClCG11G000220 Citrullus lanatus HOM05D004159 ORTHO05D005858 7.0e-174 614.8 504 62.1
HPP92_005716 Vanilla planifolia HOM05D004159 ORTHO05D005858 2.7e-173 612.8 521 59.7
Prupe.4G071200 Prunus persica HOM05D004159 ORTHO05D005858 1.2e-170 604.0 542 56.8
Sopen07g024120 Solanum pennellii HOM05D004159 ORTHO05D005858 1.0e-169 600.9 488 61.9
Medtr8g010330 Medicago truncatula HOM05D004159 ORTHO05D005858 3.0e-169 599.4 479 61.2
ECA248G2726 Erigeron canadensis HOM05D004159 ORTHO05D005858 1.9e-155 553.5 524 55.3
SMO356G0182 Selaginella moellendorffii HOM05D004159 ORTHO05D005858 4.7e-154 548.9 520 55.2
Mapoly0138s0023 Marchantia polymorpha HOM05D004159 ORTHO05D005858 1.7e-151 540.4 520 52.7
AagrBONN_evm.TU.Sc2ySwM_362.1908 Anthoceros agrestis HOM05D004159 ORTHO05D005858 2.3e-148 530.0 535 50.7
arahy.Tifrunner.gnm1.ann1.M9AKWN Arachis hypogaea HOM05D004159 ORTHO05D005858 1.4e-142 510.8 429 59.9
Nitab4.5_0008375g0010 Nicotiana tabacum HOM05D004159 ORTHO05D005858 1.7e-140 503.8 428 57.9
Pp3c3_23250 Physcomitrium patens HOM05D004159 ORTHO05D005858 3.1e-137 493.0 536 48.5
CBR_g38896 Chara braunii HOM05D004159 ORTHO05D005858 5.1e-132 475.7 586 45.4
Dinv35104 Davidia involucrata HOM05D004159 ORTHO05D005858 1.1e-121 441.4 394 60.7
Cre16.g683793 Chlamydomonas reinhardtii HOM05D004159 ORTHO05D005858 1.5e-120 437.6 632 39.6
Sc03g0007500 Simmondsia chinensis HOM05D004159 ORTHO05D005858 5.8e-120 435.6 314 69.4
TPR.G27000 Trifolium pratense HOM05D004159 ORTHO05D005858 1.0e-116 424.9 439 50.6
Ca_22754_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 8.2e-114 415.2 358 60.1
MCO04G526 Micromonas commoda HOM05D004159 ORTHO05D005858 2.4e-113 413.7 456 46.7
Hma1.2p1_2964F.1_g330970 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 3.5e-109 399.8 317 63.4
PRCOL_00002170 Prasinoderma coloniale HOM05D004159 ORTHO05D005858 1.9e-107 394.0 445 45.4
Hma1.2p1_0999F.1_g246250 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 1.1e-89 335.1 354 51.7
Zm00001eb053940 Zea mays HOM05D004159 ORTHO05D005858 1.8e-84 317.8 323 52.9
Haze_26879 Corylus avellana HOM05D004159 ORTHO05D005858 5.2e-84 316.2 466 39.5
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 1.4e-73 281.6 486 37.2
RcHm_v2.0_Chr5g0047861 Rosa chinensis HOM05D004159 ORTHO05D036595 3.0e-68 263.8 183 68.9
Sc03g0007510 Simmondsia chinensis HOM05D004159 ORTHO05D005858 4.1e-65 253.4 162 75.3
Psat1g081880 Pisum sativum HOM05D004159 ORTHO05D019349 5.5e-62 243.0 194 63.9
BcaB01g05108 Brassica carinata HOM05D004159 ORTHO05D005858 3.4e-51 207.2 174 56.9
Hma1.2p1_0999F.1_g246240 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 4.4e-51 206.8 136 69.1
PSO675G5574 Papaver somniferum HOM05D004159 ORTHO05D302046 1.3e-50 205.3 374 38.5
MD10G1043900 Malus domestica HOM05D004159 ORTHO05D036595 1.4e-36 158.7 120 60.0
Gohir.D06G181800 Gossypium hirsutum HOM05D004159 ORTHO05D021100 6.8e-36 156.4 119 63.0
Ca_31061_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 6.6e-31 139.8 172 48.3
Gohir.D13G037150 Gossypium hirsutum HOM05D004159 ORTHO05D021100 8.6e-31 139.4 113 61.1
Gorai.013G041700 Gossypium raimondii HOM05D004159 ORTHO05D005858 4.3e-30 137.1 113 59.3
HanXRQChr05g0138871 Helianthus annuus HOM05D004159 ORTHO05D005858 3.6e-29 134.0 117 59.8
Aa31sc84G60 Aethionema arabicum HOM05D004159 ORTHO05D007259 5.8e-27 126.7 221 39.8
Actinidia33332 Actinidia chinensis HOM05D004159 ORTHO05D002141 2.9e-26 124.4 80 71.2
SEGI_01298 Sequoiadendron giganteum HOM05D004159 ORTHO05D021100 8.4e-26 122.9 76 69.7
Hma1.2p1_0078F.1_g040075 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 2.1e-24 118.2 92 63.0
Hma1.2p1_0078F.1_g040060 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 6.0e-24 116.7 92 62.0
RcHm_v2.0_Chr5g0047691 Rosa chinensis HOM05D004159 ORTHO05D036595 8.7e-23 112.8 82 62.2
Medtr6g022610 Medicago truncatula HOM05D004159 ORTHO05D005858 9.6e-22 109.4 179 40.2
Actinidia35769 Actinidia chinensis HOM05D004159 ORTHO05D021100 2.1e-16 91.7 104 51.9
Medtr6g022550 Medicago truncatula HOM05D004159 ORTHO05D005858 6.6e-15 86.7 63 61.9
Lj2g0001382 Lotus japonicus HOM05D004159 ORTHO05D235994 2.5e-14 84.7 72 58.3
MD13G1107200 Malus domestica HOM05D004159 ORTHO05D021100 1.4e-12 79.0 60 53.3
Zm00001eb053920 Zea mays HOM05D004159 ORTHO05D021100 2.1e-08 65.1 41 73.2
Medtr6g022570 Medicago truncatula HOM05D004159 ORTHO05D005858 1.1e-06 59.3 86 40.7
Gohir.D10G229800 Gossypium hirsutum HOM05D000561 ORTHO05D000514 1.5e-06 58.9 35 80.0
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 2.5e-06 58.2 34 79.4


User provided reference genes

Program Settings