Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62039273 Chenopodium quinoa HOM05D006010 ORTHO05D007381 3.1e-140 501.9 275 100.0
AUR62016215 Chenopodium quinoa HOM05D006010 ORTHO05D007381 9.1e-132 473.8 275 94.9
EL10Ac3g05516 Beta vulgaris HOM05D006010 ORTHO05D007381 2.0e-107 392.9 276 79.0
Hund11982 Selenicereus undatus HOM05D006010 ORTHO05D007381 5.6e-81 305.1 269 63.9
Ah.05g176710 Amaranthus hybridus HOM05D006010 ORTHO05D007381 1.2e-78 297.4 339 55.8
Cc02_g11480 Coffea canephora HOM05D006010 ORTHO05D007381 1.1e-63 247.7 275 54.9
Prupe.2G048000 Prunus persica HOM05D006010 ORTHO05D007381 3.1e-63 246.1 276 54.0
Actinidia35721 Actinidia chinensis HOM05D006010 ORTHO05D007381 4.0e-63 245.7 298 53.7
PGSC0003DMG400013242 Solanum tuberosum HOM05D006010 ORTHO05D007381 6.9e-63 245.0 298 53.4
arahy.Tifrunner.gnm1.ann1.ZG5C6W Arachis hypogaea HOM05D006010 ORTHO05D007381 4.9e-61 238.8 277 53.1
Peaxi162Scf00464g00430 Petunia axillaris HOM05D006010 ORTHO05D007381 4.9e-61 238.8 298 52.3
CiPaw.03G074500 Carya illinoinensis HOM05D006010 ORTHO05D007381 1.1e-60 237.7 291 51.9
Migut.K00936 Erythranthe guttata HOM05D006010 ORTHO05D007381 4.2e-60 235.7 270 55.2
Sopen11g006280 Solanum pennellii HOM05D006010 ORTHO05D007381 4.2e-60 235.7 298 51.7
Potri.017G135500 Populus trichocarpa HOM05D006010 ORTHO05D007381 5.4e-60 235.3 302 51.3
Haze_14288 Corylus avellana HOM05D006010 ORTHO05D007381 9.3e-60 234.6 286 52.4
Eucgr.F02881 Eucalyptus grandis HOM05D006010 ORTHO05D007381 9.3e-60 234.6 276 53.3
Hma1.2p1_0249F.1_g102390 Hydrangea macrophylla HOM05D006010 ORTHO05D007381 9.3e-60 234.6 271 52.0
CAN.G222.64 Capsicum annuum HOM05D006010 ORTHO05D007381 1.6e-59 233.8 294 52.7
Rhsim10G0180400 Rhododendron simsii HOM05D006010 ORTHO05D007381 1.6e-59 233.8 294 49.7
arahy.Tifrunner.gnm1.ann1.RW4QB8 Arachis hypogaea HOM05D006010 ORTHO05D007381 2.7e-59 233.0 276 51.8
Lj4g0009716 Lotus japonicus HOM05D006010 ORTHO05D007381 2.7e-59 233.0 272 52.9
TWI53G0527 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 3.5e-59 232.6 291 50.9
arahy.Tifrunner.gnm1.ann1.14A9Q3 Arachis hypogaea HOM05D006010 ORTHO05D007381 1.0e-58 231.1 283 50.9
Cfa007784 Carpinus fangiana HOM05D006010 ORTHO05D007381 1.7e-58 230.3 286 49.7
Sabra17G0114300 Salix brachista HOM05D006010 ORTHO05D007381 2.3e-58 229.9 310 48.7
Sc22g0001300 Simmondsia chinensis HOM05D006010 ORTHO05D007381 2.3e-58 229.9 278 54.3
CsaV3_2G017210 Cucumis sativus L. HOM05D006010 ORTHO05D007381 3.9e-58 229.2 271 52.8
MD02G1273300 Malus domestica HOM05D006010 ORTHO05D007381 3.9e-58 229.2 273 52.4
Atru.chr11.39 Acer truncatum HOM05D006010 ORTHO05D007381 5.1e-58 228.8 288 51.4
Sed0003139 Sechium edule HOM05D006010 ORTHO05D007381 5.1e-58 228.8 279 53.8
Ca_05962_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 6.6e-58 228.4 288 50.0
Sed0022983 Sechium edule HOM05D006010 ORTHO05D007381 8.7e-58 228.0 275 54.2
Sabra17G0111300 Salix brachista HOM05D006010 ORTHO05D007381 4.3e-57 225.7 311 47.9
Actinidia28796 Actinidia chinensis HOM05D006010 ORTHO05D007381 9.6e-57 224.6 246 55.3
MELO3C020924.2 Cucumis melo HOM05D006010 ORTHO05D007381 1.6e-56 223.8 275 53.1
MSTRG.15654 Avicennia marina HOM05D006010 ORTHO05D007381 3.6e-56 222.6 303 48.8
Lsat_1_v5_gn_3_65880 Lactuca sativa HOM05D006010 ORTHO05D007381 1.1e-55 221.1 272 51.8
Cpa.g.sc116.81 Carica papaya HOM05D006010 ORTHO05D007381 2.4e-55 219.9 333 45.3
Lalb_Chr10g0104261 Lupinus albus HOM05D006010 ORTHO05D007381 5.3e-55 218.8 295 48.1
RcHm_v2.0_Chr3g0492111 Rosa chinensis HOM05D006010 ORTHO05D007381 6.9e-55 218.4 275 48.0
PGR004G1862 Punica granatum HOM05D006010 ORTHO05D007381 1.2e-54 217.6 284 50.7
ECA236G4224 Erigeron canadensis HOM05D006010 ORTHO05D007381 2.0e-54 216.9 273 50.5
SalBow1G7757 Salvia bowleyana HOM05D006010 ORTHO05D007381 2.0e-54 216.9 298 49.7
QL12p000853 Quercus lobata HOM05D006010 ORTHO05D007381 3.4e-54 216.1 345 44.3
Ciclev10026000m.g Citrus clementina HOM05D006010 ORTHO05D007381 5.8e-54 215.3 305 47.2
HanXRQChr15g0482991 Helianthus annuus HOM05D006010 ORTHO05D007381 5.8e-54 215.3 277 50.2
Medtr5g077800 Medicago truncatula HOM05D006010 ORTHO05D007381 5.8e-54 215.3 288 50.0
Solyc11g011490.2 Solanum lycopersicum HOM05D006010 ORTHO05D007381 1.3e-53 214.2 272 51.5
Oeu048940.2 Olea europaea HOM05D006010 ORTHO05D007381 2.9e-53 213.0 312 47.4
Psat2g045640 Pisum sativum HOM05D006010 ORTHO05D007381 2.9e-53 213.0 291 48.8
FAN19G0427 Fragaria x ananassa HOM05D006010 ORTHO05D007381 4.9e-53 212.2 276 50.0
Phvul.004G098200 Phaseolus vulgaris HOM05D006010 ORTHO05D007381 4.9e-53 212.2 294 46.9
FvH4_1g30030 Fragaria vesca HOM05D006010 ORTHO05D007381 6.4e-53 211.8 276 49.6
ClCG05G010670 Citrullus lanatus HOM05D006010 ORTHO05D007381 4.2e-52 209.1 276 48.9
GSVIVG01015997001 Vitis vinifera HOM05D006010 ORTHO05D007381 4.2e-52 209.1 365 41.4
FAN28G0351 Fragaria x ananassa HOM05D006010 ORTHO05D007381 1.8e-50 203.8 306 45.8
Duzib235G0102 Durio zibethinus HOM05D006010 ORTHO05D007381 2.3e-50 203.4 287 47.7
Nn3g17023 Nelumbo nucifera HOM05D006010 ORTHO05D007381 5.1e-50 202.2 313 43.8
DCAR_014157 Daucus carota HOM05D006010 ORTHO05D007381 7.4e-49 198.4 279 46.2
unitig_0.g1692 Utricularia gibba HOM05D006010 ORTHO05D007381 9.6e-49 198.0 300 46.0
vmacro20589 Vaccinium macrocarpon HOM05D006010 ORTHO05D007381 1.6e-48 197.2 302 45.0
FAN28G1345 Fragaria x ananassa HOM05D006010 ORTHO05D007381 4.8e-48 195.7 276 47.8
SGA_v2.0_scaffold115G32097 Striga asiatica HOM05D006010 ORTHO05D007381 2.4e-47 193.4 291 45.7
THA.LOC104827184 Tarenaya hassleriana HOM05D006010 ORTHO05D007381 6.9e-47 191.8 309 44.0
VMungo0464G0699 Vigna mungo HOM05D006010 ORTHO05D007381 2.0e-46 190.3 268 47.4
TPR.G23647 Trifolium pratense HOM05D006010 ORTHO05D007381 2.6e-46 189.9 265 47.5
CANSAT01G2297 Cannabis sativa HOM05D006010 ORTHO05D007381 4.5e-46 189.1 321 40.8
Glyma.02G082600 Glycine max HOM05D006010 ORTHO05D007381 2.5e-44 183.3 288 45.8
FAN23G2851 Fragaria x ananassa HOM05D006010 ORTHO05D007381 3.2e-44 183.0 303 43.9
Glyma.16G168300 Glycine max HOM05D006010 ORTHO05D007381 5.5e-44 182.2 288 45.8
Sp3g01890 Schrenkiella parvula HOM05D006010 ORTHO05D007381 1.6e-43 180.6 288 44.8
Thecc.06G019600 Theobroma cacao HOM05D006010 ORTHO05D007381 2.7e-43 179.9 330 38.8
GSVIVG01015998001 Vitis vinifera HOM05D006010 ORTHO05D007381 4.6e-43 179.1 265 47.2
TAR623G0083 Trochodendron aralioides HOM05D006010 ORTHO05D007381 1.9e-41 173.7 320 43.1
CDE09G0547 Ceratophyllum demersum HOM05D006010 ORTHO05D007381 1.6e-40 170.6 324 41.0
MD07G1042200 Malus domestica HOM05D006010 ORTHO05D007381 2.8e-40 169.9 273 44.3
Zm00001eb291600 Zea mays HOM05D006010 ORTHO05D007381 1.4e-39 167.5 328 38.1
Aa31LG5G13330 Aethionema arabicum HOM05D006010 ORTHO05D007381 2.4e-39 166.8 281 42.7
Carub.0003s0196 Capsella rubella HOM05D006010 ORTHO05D007381 4.1e-39 166.0 281 42.0
AL3G12280 Arabidopsis lyrata HOM05D006010 ORTHO05D007381 5.3e-39 165.6 254 44.9
AT3G02860 Arabidopsis thaliana HOM05D006010 ORTHO05D007381 1.5e-38 164.1 254 44.5
BcaC05g30500 Brassica carinata HOM05D000919 ORTHO05D004442 7.6e-38 161.8 275 44.0
Sed0026765 Sechium edule HOM05D006010 ORTHO05D007381 7.6e-38 161.8 260 45.4
C09p75990 Brassica napus HOM05D006010 ORTHO05D007381 1.7e-37 160.6 271 43.2
BolC5t35058H Brassica oleracea HOM05D006010 ORTHO05D007381 1.7e-37 160.6 271 43.2
A05p44250 Brassica napus HOM05D006010 ORTHO05D007381 2.9e-37 159.8 271 45.4
BraA06t23281Z Brassica rapa HOM05D000919 ORTHO05D004442 2.9e-37 159.8 271 45.4
Thhalv10021193m.g Eutrema salsugineum HOM05D006010 ORTHO05D007381 2.9e-37 159.8 248 41.5
Os05g0495100 Oryza sativa ssp. japonica HOM05D006010 ORTHO05D007381 6.5e-37 158.7 339 37.8
FAN26G2228 Fragaria x ananassa HOM05D006010 ORTHO05D007381 7.2e-36 155.2 229 47.2
CARHR076870 Cardamine hirsuta HOM05D006010 ORTHO05D007381 9.3e-36 154.8 277 41.5
Lj2A517G41 Lonicera japonica HOM05D006010 ORTHO05D007381 2.7e-35 153.3 223 45.7
AagrBONN_evm.TU.Sc2ySwM_369.381 Anthoceros agrestis HOM05D006010 ORTHO05D007381 4.6e-35 152.5 264 40.9
GSVIVG01016007001 Vitis vinifera HOM05D006010 ORTHO05D007381 1.0e-34 151.4 246 45.1
COL.COLO4_31121 Corchorus olitorius HOM05D006010 ORTHO05D007381 7.4e-33 145.2 350 34.3
Mapoly0044s0136 Marchantia polymorpha HOM05D006010 ORTHO05D007381 3.1e-31 139.8 277 40.1
TWI74G0222 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 1.3e-29 134.4 223 43.9
Gohir.A10G157800 Gossypium hirsutum HOM05D006010 ORTHO05D007381 2.9e-29 133.3 353 34.0
Gorai.011G090700 Gossypium raimondii HOM05D006010 ORTHO05D007381 3.8e-29 132.9 334 34.1
Gohir.D10G083400 Gossypium hirsutum HOM05D006010 ORTHO05D007381 5.0e-29 132.5 334 35.0
SEGI_17538 Sequoiadendron giganteum HOM05D006010 ORTHO05D007381 6.5e-29 132.1 265 38.1
CSS0039891 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 1.1e-28 131.3 129 57.4
GSVIVG01016005001 Vitis vinifera HOM05D006010 ORTHO05D007381 1.4e-28 131.0 124 62.1
PSO478G0898 Papaver somniferum HOM05D006010 ORTHO05D007381 4.2e-28 129.4 254 39.0
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 1.2e-27 127.9 198 42.9
PSO017G1892 Papaver somniferum HOM05D006010 ORTHO05D007381 1.8e-26 124.0 282 35.8
Manes.07G077600 Manihot esculenta HOM05D006010 ORTHO05D007381 3.0e-26 123.2 213 43.2
Ca_05837_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 2.5e-25 120.2 157 49.0
Ca_05839_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 3.3e-25 119.8 131 51.9
SHI30126 Sapria himalayana HOM05D006010 ORTHO05D007381 9.1e-23 111.7 132 49.2
Aqoxy3G00232 Aquilegia oxysepala HOM05D006010 ORTHO05D007381 2.6e-22 110.2 85 76.5
ATR0320G006 Amborella trichopoda HOM05D006010 ORTHO05D007381 1.3e-21 107.8 101 61.4
FAN25G0538 Fragaria x ananassa HOM05D006010 ORTHO05D007381 8.8e-18 95.1 104 56.7
ATR0320G008 Amborella trichopoda HOM05D006010 ORTHO05D007381 1.7e-16 90.9 135 42.2
Sed0018686 Sechium edule HOM05D006010 ORTHO05D007381 4.8e-16 89.4 60 65.0
Sed0023512 Sechium edule HOM05D006010 ORTHO05D007381 4.8e-16 89.4 63 63.5
SHI30124 Sapria himalayana HOM05D006010 ORTHO05D007381 3.1e-15 86.7 117 42.7
GSVIVG01016036001 Vitis vinifera HOM05D006010 ORTHO05D007381 1.6e-14 84.3 61 65.6
Lj2A517G40 Lonicera japonica HOM05D006010 ORTHO05D007381 4.5e-14 82.8 64 73.4
CSS0001849 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 7.7e-14 82.0 69 69.6
CSS0044569 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 7.7e-14 82.0 69 69.6
Pp3c12_7630 Physcomitrium patens HOM05D006010 ORTHO05D007381 1.5e-12 77.8 164 37.2
Nitab4.5_0011135g0050 Nicotiana tabacum HOM05D006010 ORTHO05D007381 4.7e-11 72.8 121 43.8
VMungo0647G0061 Vigna mungo HOM05D026408 ORTHO05D029776 2.7e-06 57.0 139 31.7


User provided reference genes

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