Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62037713 Chenopodium quinoa HOM05D004578 ORTHO05D005529 3.7e-246 854.4 415 100.0
AUR62020290 Chenopodium quinoa HOM05D004578 ORTHO05D005529 1.3e-238 829.3 415 96.9
EL10Ac2g02417 Beta vulgaris HOM05D004578 ORTHO05D005529 4.0e-208 728.0 408 83.6
Ah.13g067790 Amaranthus hybridus HOM05D004578 ORTHO05D005529 2.5e-194 682.2 403 79.2
Hund13109 Selenicereus undatus HOM05D004578 ORTHO05D005529 1.3e-174 616.7 403 71.2
Eucgr.C04012 Eucalyptus grandis HOM05D004578 ORTHO05D005529 5.5e-157 558.1 398 65.8
Sc07g0007360 Simmondsia chinensis HOM05D004578 ORTHO05D005529 2.3e-155 552.7 398 64.6
Peaxi162Scf00045g01734 Petunia axillaris HOM05D004578 ORTHO05D005529 3.0e-155 552.4 399 63.7
vmacro18918 Vaccinium macrocarpon HOM05D004578 ORTHO05D005529 1.5e-154 550.1 405 63.2
MD15G1106400 Malus domestica HOM05D004578 ORTHO05D005529 2.0e-154 549.7 393 65.1
Dinv04517 Davidia involucrata HOM05D004578 ORTHO05D005529 2.6e-154 549.3 408 63.2
PSO170G4894 Papaver somniferum HOM05D004578 ORTHO05D005529 2.6e-154 549.3 407 63.4
TAR625G0669 Trochodendron aralioides HOM05D004578 ORTHO05D005529 1.4e-152 543.5 399 63.4
AL4G15160 Arabidopsis lyrata HOM05D004578 ORTHO05D005529 2.4e-152 542.7 399 62.2
Nn8g40733 Nelumbo nucifera HOM05D004578 ORTHO05D005529 2.4e-152 542.7 398 64.1
PSO063G3790 Papaver somniferum HOM05D004578 ORTHO05D005529 3.1e-152 542.3 402 63.4
MD08G1126500 Malus domestica HOM05D004578 ORTHO05D005529 4.1e-152 542.0 393 64.4
Lj7P748T39 Lonicera japonica HOM05D004578 ORTHO05D005529 5.4e-152 541.6 391 63.4
Prupe.1G458600 Prunus persica HOM05D004578 ORTHO05D005529 7.0e-152 541.2 393 63.6
Cc08_g06480 Coffea canephora HOM05D004578 ORTHO05D005529 1.6e-151 540.0 402 61.2
Nitab4.5_0000555g0200 Nicotiana tabacum HOM05D004578 ORTHO05D005529 1.6e-151 540.0 403 62.0
Carub.0004s0400 Capsella rubella HOM05D004578 ORTHO05D005529 2.7e-151 539.3 404 61.1
Ciclev10008459m.g Citrus clementina HOM05D004578 ORTHO05D005529 4.5e-151 538.5 402 61.4
Sp4g03570 Schrenkiella parvula HOM05D004578 ORTHO05D005529 4.5e-151 538.5 400 62.2
CSS0030954 Camellia sinensis var. sinensis HOM05D004578 ORTHO05D005529 5.9e-151 538.1 399 62.4
Manes.16G134500 Manihot esculenta HOM05D004578 ORTHO05D005529 5.9e-151 538.1 400 62.2
CAN.G673.19 Capsicum annuum HOM05D004578 ORTHO05D005529 7.7e-151 537.7 400 62.2
COL.COLO4_19019 Corchorus olitorius HOM05D004578 ORTHO05D005529 1.7e-150 536.6 406 63.5
AT2G24580 Arabidopsis thaliana HOM05D004578 ORTHO05D005529 2.2e-150 536.2 400 61.8
BolC4t26970H Brassica oleracea HOM05D004578 ORTHO05D005529 2.2e-150 536.2 399 62.2
CARHR117360 Cardamine hirsuta HOM05D004578 ORTHO05D005529 2.2e-150 536.2 400 61.2
Duzib168G2341 Durio zibethinus HOM05D004578 ORTHO05D005529 5.0e-150 535.0 398 62.8
BcaC02g08438 Brassica carinata HOM05D004578 ORTHO05D005529 6.5e-150 534.6 399 61.9
C04p54190 Brassica napus HOM05D004578 ORTHO05D005529 6.5e-150 534.6 399 61.9
A04p18950 Brassica napus HOM05D004578 ORTHO05D005529 8.5e-150 534.3 399 61.9
BraA04t17495Z Brassica rapa HOM05D004578 ORTHO05D005529 1.1e-149 533.9 399 61.9
FAN27G0985 Fragaria x ananassa HOM05D004578 ORTHO05D005529 1.1e-149 533.9 394 62.4
Sabra06G0211200 Salix brachista HOM05D004578 ORTHO05D005529 1.5e-149 533.5 399 61.9
Sopen08g002370 Solanum pennellii HOM05D004578 ORTHO05D005529 1.5e-149 533.5 400 59.8
Potri.018G008700 Populus trichocarpa HOM05D004578 ORTHO05D005529 2.5e-149 532.7 402 60.9
Migut.A00428 Erythranthe guttata HOM05D004578 ORTHO05D005529 4.2e-149 531.9 400 60.2
FvH4_2g36660 Fragaria vesca HOM05D004578 ORTHO05D005529 5.5e-149 531.6 394 62.4
TWI32G0020 Tripterygium wilfordii HOM05D004578 ORTHO05D005529 5.5e-149 531.6 397 63.0
Thhalv10000150m.g Eutrema salsugineum HOM05D004578 ORTHO05D005529 7.2e-149 531.2 400 61.0
Aqoxy7G02848 Aquilegia oxysepala HOM05D004578 ORTHO05D005529 9.4e-149 530.8 402 60.7
BcaB06g27986 Brassica carinata HOM05D004578 ORTHO05D005529 1.2e-148 530.4 400 61.5
Prupe.1G458900 Prunus persica HOM05D004578 ORTHO05D005529 1.2e-148 530.4 399 61.9
MBI16_g05839_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 2.1e-148 529.6 401 61.8
CANSAT25G1430 Cannabis sativa HOM05D004578 ORTHO05D005529 2.7e-148 529.3 397 61.5
DCAR_000687 Daucus carota HOM05D004578 ORTHO05D005529 2.7e-148 529.3 397 59.9
Sabra18G0013200 Salix brachista HOM05D004578 ORTHO05D005529 2.7e-148 529.3 399 61.4
Sabra18G0015700 Salix brachista HOM05D004578 ORTHO05D005529 2.7e-148 529.3 399 61.4
FAN20G1103 Fragaria x ananassa HOM05D004578 ORTHO05D005529 3.6e-148 528.9 394 61.9
FAN15G2443 Fragaria x ananassa HOM05D004578 ORTHO05D005529 4.7e-148 528.5 394 62.2
MSTRG.25795 Avicennia marina HOM05D004578 ORTHO05D005529 6.1e-148 528.1 400 61.0
Solyc08g006430.4 Solanum lycopersicum HOM05D004578 ORTHO05D005529 6.1e-148 528.1 393 60.8
PGSC0003DMG400026320 Solanum tuberosum HOM05D004578 ORTHO05D005529 6.1e-148 528.1 403 60.0
Ciclev10008463m.g Citrus clementina HOM05D004578 ORTHO05D005529 1.0e-147 527.3 402 60.4
Thecc.09G008600 Theobroma cacao HOM05D004578 ORTHO05D005529 1.0e-147 527.3 398 61.6
Gohir.A06G104800 Gossypium hirsutum HOM05D004578 ORTHO05D005529 1.4e-147 526.9 401 61.1
QL12p025440 Quercus lobata HOM05D004578 ORTHO05D005529 4.0e-147 525.4 393 61.8
Aa31sc160G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 5.2e-147 525.0 402 60.9
Gorai.010G121600 Gossypium raimondii HOM05D004578 ORTHO05D005529 1.2e-146 523.9 397 61.5
Potri.006G272800 Populus trichocarpa HOM05D004578 ORTHO05D005529 1.2e-146 523.9 391 61.4
THA.LOC104819936 Tarenaya hassleriana HOM05D004578 ORTHO05D005529 1.2e-146 523.9 404 59.9
Aa31sc715G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 1.5e-146 523.5 410 60.0
ClCG05G026450 Citrullus lanatus HOM05D004578 ORTHO05D005529 1.5e-146 523.5 398 61.1
Rhsim10G0084800 Rhododendron simsii HOM05D004578 ORTHO05D005529 1.5e-146 523.5 393 60.8
Gohir.D06G107000 Gossypium hirsutum HOM05D004578 ORTHO05D005529 3.4e-146 522.3 397 61.5
Manes.03G004800 Manihot esculenta HOM05D004578 ORTHO05D005529 7.5e-146 521.2 392 59.7
MELO3C003620.2 Cucumis melo HOM05D004578 ORTHO05D005529 1.3e-145 520.4 398 60.8
CsaV3_3G047160 Cucumis sativus L. HOM05D004578 ORTHO05D005529 1.3e-145 520.4 402 60.0
Cpa.g.sc23.31 Carica papaya HOM05D004578 ORTHO05D005529 8.3e-145 517.7 397 59.7
Actinidia06432 Actinidia chinensis HOM05D004578 ORTHO05D005529 1.1e-144 517.3 406 58.6
Nitab4.5_0004131g0050 Nicotiana tabacum HOM05D004578 ORTHO05D005529 5.4e-144 515.0 388 61.3
TAR383G0560 Trochodendron aralioides HOM05D004578 ORTHO05D005529 7.0e-144 514.6 386 61.1
TAR383G1032 Trochodendron aralioides HOM05D004578 ORTHO05D005529 2.0e-143 513.1 386 60.9
Atru.chr7.2661 Acer truncatum HOM05D004578 ORTHO05D005529 3.5e-143 512.3 402 61.2
Cfa013287 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.0e-142 510.8 394 61.7
Haze_21761 Corylus avellana HOM05D004578 ORTHO05D005529 2.9e-142 509.2 394 61.9
Cc00_g13120 Coffea canephora HOM05D004578 ORTHO05D005529 3.8e-142 508.8 396 58.6
CiPaw.07G211300 Carya illinoinensis HOM05D004578 ORTHO05D005529 5.0e-142 508.4 397 61.2
SalBow4G0906 Salvia bowleyana HOM05D004578 ORTHO05D005529 1.5e-141 506.9 398 58.8
QL12p025516 Quercus lobata HOM05D004578 ORTHO05D005529 9.5e-141 504.2 392 59.4
PGR044G1507 Punica granatum HOM05D004578 ORTHO05D005529 2.8e-140 502.7 405 58.0
Eucgr.C04016 Eucalyptus grandis HOM05D004578 ORTHO05D005529 1.0e-139 500.7 387 59.9
CDE02G4459 Ceratophyllum demersum HOM05D004578 ORTHO05D005529 2.3e-139 499.6 389 58.6
ECA247G3559 Erigeron canadensis HOM05D004578 ORTHO05D005529 3.0e-139 499.2 411 58.9
SGA_v2.0_scaffold193G40672 Striga asiatica HOM05D004578 ORTHO05D005529 6.8e-139 498.0 400 57.5
Cfa013284 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.2e-138 497.3 394 59.6
Eucgr.C04014 Eucalyptus grandis HOM05D004578 ORTHO05D005529 1.5e-138 496.9 387 59.7
RcHm_v2.0_Chr6g0305131 Rosa chinensis HOM05D004578 ORTHO05D005529 3.4e-138 495.7 393 59.8
CiPaw.08G020700 Carya illinoinensis HOM05D004578 ORTHO05D005529 2.2e-137 493.0 393 58.5
Sed0023873 Sechium edule HOM05D004578 ORTHO05D005529 2.2e-137 493.0 402 58.5
HanXRQChr15g0466441 Helianthus annuus HOM05D004578 ORTHO05D005529 6.4e-137 491.5 410 56.6
BcaC02g08437 Brassica carinata HOM05D004578 ORTHO05D005529 7.0e-136 488.0 398 58.3
Lsat_1_v5_gn_9_4341 Lactuca sativa HOM05D004578 ORTHO05D005529 2.0e-135 486.5 410 55.6
Cfa013283 Carpinus fangiana HOM05D004578 ORTHO05D005529 3.5e-135 485.7 385 59.0
MBI13_g34048_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 1.7e-134 483.4 399 57.4
HanXRQChr10g0282951 Helianthus annuus HOM05D004578 ORTHO05D005529 2.5e-133 479.6 411 54.7
VMungo1309G1783 Vigna mungo HOM05D004578 ORTHO05D005529 7.3e-133 478.0 382 57.3
TPR.G12360 Trifolium pratense HOM05D004578 ORTHO05D005529 9.5e-133 477.6 387 57.1
Medtr3g108990 Medicago truncatula HOM05D004578 ORTHO05D005529 4.7e-132 475.3 387 57.1
Ca_15651_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 5.2e-131 471.9 384 57.3
Ca_15659_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 5.2e-131 471.9 384 57.3
arahy.Tifrunner.gnm1.ann1.M0AD1K Arachis hypogaea HOM05D004578 ORTHO05D005529 6.8e-131 471.5 393 55.0
arahy.Tifrunner.gnm1.ann1.W2ETIH Arachis hypogaea HOM05D004578 ORTHO05D005529 1.2e-130 470.7 393 55.5
Phvul.009G102000 Phaseolus vulgaris HOM05D004578 ORTHO05D005529 2.6e-130 469.5 382 56.3
TPR.G12429 Trifolium pratense HOM05D004578 ORTHO05D005529 2.6e-130 469.5 392 55.6
Ca_15652_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 2.4e-128 463.0 378 57.7
Ca_15660_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 2.4e-128 463.0 378 57.7
Glyma.04G076300 Glycine max HOM05D004578 ORTHO05D005529 1.2e-127 460.7 383 55.4
Medtr3g109010 Medicago truncatula HOM05D004578 ORTHO05D005529 2.0e-127 459.9 382 55.2
Prupe.1G458800 Prunus persica HOM05D004578 ORTHO05D005529 1.0e-126 457.6 396 56.6
unitig_32.g11237 Utricularia gibba HOM05D004578 ORTHO05D005529 2.3e-126 456.4 383 56.1
Actinidia22261 Actinidia chinensis HOM05D004578 ORTHO05D005529 5.6e-125 451.8 406 54.2
Lj1g0024454 Lotus japonicus HOM05D004578 ORTHO05D005529 1.4e-123 447.2 382 53.7
ATR0626G173 Amborella trichopoda HOM05D004578 ORTHO05D005529 2.0e-122 443.4 406 53.7
Psat5g024080 Pisum sativum HOM05D004578 ORTHO05D005529 2.1e-119 433.3 387 51.4
SEGI_31206 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 5.1e-118 428.7 407 51.4
SEGI_11947 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 4.7e-116 422.2 405 51.6
Os09g0498500 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 1.3e-113 414.1 405 50.1
Zm00001eb317190 Zea mays HOM05D004578 ORTHO05D005529 2.1e-111 406.8 399 50.1
Lalb_Chr11g0064181 Lupinus albus HOM05D004578 ORTHO05D005529 2.5e-109 399.8 384 49.2
Zm00001eb127180 Zea mays HOM05D004578 ORTHO05D005529 6.9e-107 391.7 397 47.9
Os01g0316100 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 7.8e-103 378.3 398 46.7
Pp3c9_3640 Physcomitrium patens HOM05D004578 ORTHO05D005529 1.0e-102 377.9 403 48.1
Os12g0543600 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 3.0e-102 376.3 383 48.0
Zm00001eb340420 Zea mays HOM05D004578 ORTHO05D005529 9.6e-101 371.3 406 46.8
Mapoly0152s0014 Marchantia polymorpha HOM05D004578 ORTHO05D005529 1.6e-100 370.5 400 45.8
AagrBONN_evm.TU.Sc2ySwM_368.3376 Anthoceros agrestis HOM05D004578 ORTHO05D005529 8.4e-97 358.2 398 46.5
SMO115G0125 Selaginella moellendorffii HOM05D004578 ORTHO05D005529 7.1e-96 355.1 407 43.7
Zm00001eb140430 Zea mays HOM05D004578 ORTHO05D005529 6.2e-92 342.0 401 45.6
HPP92_017393 Vanilla planifolia HOM05D004578 ORTHO05D005529 1.1e-80 304.7 395 43.3
Gohir.D06G106866 Gossypium hirsutum HOM05D004578 ORTHO05D005529 2.5e-80 303.5 401 42.4
GSVIVG01033177001 Vitis vinifera HOM05D004578 ORTHO05D005529 3.3e-77 293.1 404 41.3
Oeu018556.1 Olea europaea HOM05D004578 ORTHO05D005529 1.3e-76 291.2 400 40.8
Oeu008773.1 Olea europaea HOM05D004578 ORTHO05D005529 3.1e-75 286.6 399 40.4
Psat5g025320 Pisum sativum HOM05D004578 ORTHO05D005529 7.6e-74 282.0 247 52.6
Gorai.010G121400 Gossypium raimondii HOM05D004578 ORTHO05D005529 8.7e-70 268.5 401 37.9
Hma1.2p1_1588F.1_g292320 Hydrangea macrophylla HOM05D004578 ORTHO05D005529 1.8e-67 260.8 400 39.5
unitig_32.g11239 Utricularia gibba HOM05D004578 ORTHO05D005529 1.4e-64 251.1 184 59.8
PRCOL_00000645 Prasinoderma coloniale HOM05D004578 ORTHO05D005529 2.0e-61 240.7 437 34.6
Cfa013285 Carpinus fangiana HOM05D004578 ORTHO05D005529 9.1e-59 231.9 229 51.1
Lalb_Chr23g0269171 Lupinus albus HOM05D004578 ORTHO05D005529 1.1e-53 214.9 158 60.1
HanXRQChr10g0282961 Helianthus annuus HOM05D004578 ORTHO05D005529 5.0e-41 172.9 155 54.2
Ca_28680_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 2.8e-36 157.1 405 29.6
Cc08_g06580 Coffea canephora HOM05D004578 ORTHO05D005529 2.9e-33 147.1 114 55.3
unitig_32.g11238 Utricularia gibba HOM05D004578 ORTHO05D005529 5.7e-29 132.9 100 61.0
Actinidia22262 Actinidia chinensis HOM05D004578 ORTHO05D005529 2.2e-28 131.0 320 29.4
TPR.G12332 Trifolium pratense HOM05D004578 ORTHO05D005529 1.9e-24 117.9 87 64.4
Cre12.g493500 Chlamydomonas reinhardtii HOM05D004578 ORTHO05D005529 6.2e-15 86.3 406 25.4
COL.COLO4_30024 Corchorus olitorius HOM05D004578 ORTHO05D005529 9.2e-11 72.4 45 75.6
HanXRQChr12g0377261 Helianthus annuus HOM05D005694 ORTHO05D007402 3.9e-09 67.0 413 24.0
Duzib264G0643 Durio zibethinus HOM05D005694 ORTHO05D007402 1.1e-08 65.5 409 23.7
BcaC05g29844 Brassica carinata HOM05D005694 ORTHO05D007402 4.3e-08 63.5 425 23.3
BolC5t34672H Brassica oleracea HOM05D005694 ORTHO05D007402 4.3e-08 63.5 425 23.3
TAR625G0317 Trochodendron aralioides HOM05D005694 ORTHO05D007402 4.3e-08 63.5 420 22.9
CARHR280330 Cardamine hirsuta HOM05D005694 ORTHO05D007402 7.3e-08 62.8 410 23.9
Lj4g0009127 Lotus japonicus HOM05D005694 ORTHO05D007402 1.2e-07 62.0 407 23.3
AUR62038254 Chenopodium quinoa HOM05D005694 ORTHO05D007402 2.1e-07 61.2 414 22.7
Glyma.17G167200 Glycine max HOM05D005694 ORTHO05D007402 2.1e-07 61.2 432 23.4
Psat0s2347g0040 Pisum sativum HOM05D004578 ORTHO05D005529 2.8e-07 60.8 58 50.0
COL.COLO4_11482 Corchorus olitorius HOM05D005694 ORTHO05D007402 4.7e-07 60.1 395 23.0
Oeu037163.1 Olea europaea HOM05D005694 ORTHO05D007402 4.7e-07 60.1 403 21.3
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 8.1e-07 59.3 45 48.9
C05p60220 Brassica napus HOM05D005694 ORTHO05D007402 1.4e-06 58.5 430 22.8
A05p41050 Brassica napus HOM05D005694 ORTHO05D007402 2.3e-06 57.8 418 23.0
CsaV3_6G043550 Cucumis sativus L. HOM05D005694 ORTHO05D007402 2.3e-06 57.8 404 22.5
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 3.1e-06 57.4 233 23.2
BraA05t22832Z Brassica rapa HOM05D005694 ORTHO05D007402 5.2e-06 56.6 409 23.0
AUR62003938 Chenopodium quinoa HOM05D005694 ORTHO05D007402 5.2e-06 56.6 412 22.8
Nitab4.5_0003962g0030 Nicotiana tabacum HOM05D005694 ORTHO05D007402 6.8e-06 56.2 132 30.3


User provided reference genes

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