Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62036875 Chenopodium quinoa HOM05D006705 ORTHO05D008179 8.7e-179 631.3 705 100.0
AUR62043173 Chenopodium quinoa HOM05D006705 ORTHO05D008179 8.8e-155 551.6 322 89.4
EL10Ac1g01967 Beta vulgaris HOM05D006705 ORTHO05D008179 3.5e-111 406.8 303 72.6
Hund05113 Selenicereus undatus HOM05D006705 ORTHO05D008179 8.6e-102 375.6 277 72.6
Actinidia15490 Actinidia chinensis HOM05D006705 ORTHO05D008179 3.8e-97 360.1 321 61.1
Ah.11g041180 Amaranthus hybridus HOM05D006705 ORTHO05D008179 4.1e-96 356.7 303 65.3
Cfa014075 Carpinus fangiana HOM05D006705 ORTHO05D008179 6.0e-95 352.8 330 59.4
Nitab4.5_0000337g0230 Nicotiana tabacum HOM05D006705 ORTHO05D008179 8.7e-94 349.0 330 59.1
Haze_22772 Corylus avellana HOM05D006705 ORTHO05D008179 1.1e-93 348.6 330 59.1
Dinv05535 Davidia involucrata HOM05D006705 ORTHO05D008179 4.3e-93 346.7 320 60.0
Nitab4.5_0025577g0010 Nicotiana tabacum HOM05D006705 ORTHO05D008179 4.3e-93 346.7 330 58.8
QL02p014030 Quercus lobata HOM05D006705 ORTHO05D008179 7.3e-93 345.9 328 58.2
Rhsim06G0007500 Rhododendron simsii HOM05D006705 ORTHO05D008179 2.1e-92 344.4 327 59.6
CSS0004504 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 3.6e-92 343.6 324 64.8
CSS0019684 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 6.2e-92 342.8 264 68.6
Nn5g30939 Nelumbo nucifera HOM05D006705 ORTHO05D008179 1.4e-91 341.7 289 65.1
Cpa.g.sc26.199 Carica papaya HOM05D006705 ORTHO05D008179 2.4e-91 340.9 281 63.7
TAR376G0550 Trochodendron aralioides HOM05D006705 ORTHO05D008179 3.1e-91 340.5 270 67.0
Potri.005G250200 Populus trichocarpa HOM05D006705 ORTHO05D008179 5.2e-91 339.7 267 67.4
Manes.05G134500 Manihot esculenta HOM05D006705 ORTHO05D008179 9.0e-91 339.0 328 63.4
THA.LOC104825423 Tarenaya hassleriana HOM05D006705 ORTHO05D008179 1.2e-90 338.6 282 62.1
Sc15g0004450 Simmondsia chinensis HOM05D006705 ORTHO05D008179 1.5e-90 338.2 276 65.6
Hma1.2p1_0507F.1_g168450 Hydrangea macrophylla HOM05D006705 ORTHO05D008179 2.0e-90 337.8 263 66.2
Oeu007482.1 Olea europaea HOM05D006705 ORTHO05D008179 3.4e-90 337.0 327 61.5
CANSAT25G1831 Cannabis sativa HOM05D006705 ORTHO05D008179 4.4e-90 336.7 274 64.6
Peaxi162Scf00400g00113 Petunia axillaris HOM05D006705 ORTHO05D008179 4.4e-90 336.7 338 55.3
Sabra05G0193800 Salix brachista HOM05D006705 ORTHO05D008179 2.2e-89 334.3 286 62.6
CAN.G985.2 Capsicum annuum HOM05D006705 ORTHO05D008179 2.9e-89 334.0 274 65.0
Atru.chr13.134 Acer truncatum HOM05D006705 ORTHO05D008179 3.8e-89 333.6 264 66.3
Ciclev10000451m.g Citrus clementina HOM05D006705 ORTHO05D008179 3.8e-89 333.6 258 67.1
Migut.C00960 Erythranthe guttata HOM05D006705 ORTHO05D008179 3.8e-89 333.6 263 64.3
ClCG08G009460 Citrullus lanatus HOM05D006705 ORTHO05D008179 6.4e-89 332.8 306 58.8
MELO3C026541.2 Cucumis melo HOM05D006705 ORTHO05D008179 8.4e-89 332.4 294 62.2
CsaV3_6G031600 Cucumis sativus L. HOM05D006705 ORTHO05D008179 1.1e-88 332.0 349 55.9
PGSC0003DMG400011663 Solanum tuberosum HOM05D006705 ORTHO05D008179 1.1e-88 332.0 263 65.4
Cc10_g00680 Coffea canephora HOM05D006705 ORTHO05D008179 3.2e-88 330.5 283 62.9
SalBow7G0522 Salvia bowleyana HOM05D006705 ORTHO05D008179 4.2e-88 330.1 257 65.8
MSTRG.1107 Avicennia marina HOM05D006705 ORTHO05D008179 5.4e-88 329.7 322 56.5
PSO170G2138 Papaver somniferum HOM05D006705 ORTHO05D008179 5.4e-88 329.7 262 65.3
PSO210G3824 Papaver somniferum HOM05D006705 ORTHO05D008179 9.3e-88 328.9 262 64.9
CARHR284920 Cardamine hirsuta HOM05D006705 ORTHO05D008179 1.6e-87 328.2 270 65.2
Lsat_1_v5_gn_9_45140 Lactuca sativa HOM05D006705 ORTHO05D008179 1.6e-87 328.2 250 68.4
RcHm_v2.0_Chr6g0304261 Rosa chinensis HOM05D006705 ORTHO05D008179 2.1e-87 327.8 266 65.8
Gorai.002G117100 Gossypium raimondii HOM05D006705 ORTHO05D008179 3.5e-87 327.0 264 67.0
Sed0011006 Sechium edule HOM05D006705 ORTHO05D008179 3.5e-87 327.0 337 55.5
Gohir.A01G105700 Gossypium hirsutum HOM05D006705 ORTHO05D008179 7.8e-87 325.9 264 67.0
Gohir.D01G092000 Gossypium hirsutum HOM05D006705 ORTHO05D008179 1.3e-86 325.1 263 66.2
Ca_15434_v3 Cicer arietinum L. HOM05D006705 ORTHO05D008179 1.7e-86 324.7 256 65.6
Ca_15459_v3 Cicer arietinum L. HOM05D006705 ORTHO05D008179 1.7e-86 324.7 256 65.6
DCAR_013913 Daucus carota HOM05D006705 ORTHO05D008179 1.7e-86 324.7 280 61.4
Psat5g159080 Pisum sativum HOM05D006705 ORTHO05D008179 2.3e-86 324.3 262 65.6
FAN27G0286 Fragaria x ananassa HOM05D006705 ORTHO05D008179 3.0e-86 323.9 261 65.9
Aa31LG9G12430 Aethionema arabicum HOM05D006705 ORTHO05D008179 5.1e-86 323.2 288 60.1
Lalb_Chr11g0061641 Lupinus albus HOM05D006705 ORTHO05D008179 5.1e-86 323.2 266 63.2
vmacro21812 Vaccinium macrocarpon HOM05D006705 ORTHO05D008179 5.1e-86 323.2 317 57.4
Lsat_1_v5_gn_8_26180 Lactuca sativa HOM05D006705 ORTHO05D008179 1.1e-85 322.0 265 63.8
Glyma.04G018000 Glycine max HOM05D006705 ORTHO05D008179 1.9e-85 321.2 255 65.1
Thecc.08G058800 Theobroma cacao HOM05D006705 ORTHO05D008179 2.5e-85 320.9 263 65.4
GSVIVG01013362001 Vitis vinifera HOM05D006705 ORTHO05D008179 2.5e-85 320.9 304 58.6
CiPaw.08G072900 Carya illinoinensis HOM05D006705 ORTHO05D008179 4.3e-85 320.1 306 59.8
COL.COLO4_06661 Corchorus olitorius HOM05D006705 ORTHO05D008179 5.6e-85 319.7 267 65.2
Sabra02G0008200 Salix brachista HOM05D006705 ORTHO05D008179 7.3e-85 319.3 260 64.6
ECA233G5787 Erigeron canadensis HOM05D006705 ORTHO05D008179 1.6e-84 318.2 322 55.3
Glyma.06G018300 Glycine max HOM05D006705 ORTHO05D008179 2.8e-84 317.4 255 64.3
CDE02G1751 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 8.1e-84 315.8 255 62.7
Aqoxy5G01043 Aquilegia oxysepala HOM05D006705 ORTHO05D008179 1.1e-83 315.5 270 61.5
ECA232G0132 Erigeron canadensis HOM05D006705 ORTHO05D008179 6.9e-83 312.8 275 60.7
FvH4_2g37460 Fragaria vesca HOM05D006705 ORTHO05D008179 1.2e-82 312.0 256 65.6
HanXRQChr12g0367581 Helianthus annuus HOM05D006705 ORTHO05D008179 3.4e-82 310.5 281 59.8
FAN15G2229 Fragaria x ananassa HOM05D006705 ORTHO05D008179 4.5e-82 310.1 251 64.9
Sopen08g014170 Solanum pennellii HOM05D006705 ORTHO05D008179 9.9e-82 308.9 241 66.4
Solyc08g045850.3 Solanum lycopersicum HOM05D006705 ORTHO05D008179 1.3e-81 308.5 241 66.4
arahy.Tifrunner.gnm1.ann1.A2XG10 Arachis hypogaea HOM05D006705 ORTHO05D008179 1.7e-81 308.1 236 66.9
Potri.002G010900 Populus trichocarpa HOM05D006705 ORTHO05D008179 2.2e-81 307.8 241 66.4
Sp7g08260 Schrenkiella parvula HOM05D006705 ORTHO05D008179 2.9e-81 307.4 236 66.9
arahy.Tifrunner.gnm1.ann1.1DQJ64 Arachis hypogaea HOM05D006705 ORTHO05D008179 4.9e-81 306.6 237 67.5
VMungo1309G2580 Vigna mungo HOM05D006705 ORTHO05D008179 1.4e-80 305.1 242 64.0
Medtr3g115270 Medicago truncatula HOM05D006705 ORTHO05D008179 2.4e-80 304.3 237 66.2
Prupe.1G354600 Prunus persica HOM05D006705 ORTHO05D008179 2.4e-80 304.3 242 66.1
HanXRQChr05g0146791 Helianthus annuus HOM05D006705 ORTHO05D008179 3.2e-80 303.9 247 63.6
SGA_v2.0_scaffold108G30860 Striga asiatica HOM05D006705 ORTHO05D008179 4.2e-80 303.5 306 52.9
A03p65890 Brassica napus HOM05D006705 ORTHO05D008179 5.4e-80 303.1 266 59.4
BraA03t15643Z Brassica rapa HOM05D006705 ORTHO05D008179 5.4e-80 303.1 266 59.4
BcaC06g31759 Brassica carinata HOM05D006705 ORTHO05D008179 9.3e-80 302.4 238 65.5
Thhalv10027665m.g Eutrema salsugineum HOM05D006705 ORTHO05D008179 1.6e-79 301.6 248 63.7
Carub.0008s0687 Capsella rubella HOM05D006705 ORTHO05D008179 2.7e-79 300.8 247 63.6
BcaC02g10761 Brassica carinata HOM05D006705 ORTHO05D008179 3.5e-79 300.4 266 61.3
C04p25410 Brassica napus HOM05D006705 ORTHO05D008179 3.5e-79 300.4 266 61.3
BolC4t24049H Brassica oleracea HOM05D006705 ORTHO05D008179 3.5e-79 300.4 266 61.3
AL8G19290 Arabidopsis lyrata HOM05D006705 ORTHO05D008179 6.0e-79 299.7 252 62.3
MD12G1003200 Malus domestica HOM05D006705 ORTHO05D008179 7.9e-79 299.3 268 60.4
Phvul.009G010700 Phaseolus vulgaris HOM05D006705 ORTHO05D008179 1.8e-78 298.1 242 62.4
AT5G42310 Arabidopsis thaliana HOM05D006705 ORTHO05D008179 2.3e-78 297.7 245 62.4
PGR031G2749 Punica granatum HOM05D006705 ORTHO05D008179 2.3e-78 297.7 336 53.3
Lj1g0004605 Lotus japonicus HOM05D006705 ORTHO05D008179 1.9e-77 294.7 239 64.9
TPR.G38137 Trifolium pratense HOM05D006705 ORTHO05D008179 4.0e-75 287.0 241 62.7
MD15G1002100 Malus domestica HOM05D006705 ORTHO05D008179 8.4e-73 279.3 242 61.2
Lj4A11G70 Lonicera japonica HOM05D006705 ORTHO05D008179 1.0e-70 272.3 178 77.0
CDE04G2934 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 7.4e-69 266.2 283 53.0
FAN20G2687 Fragaria x ananassa HOM05D000148 ORTHO05D008179 1.4e-51 208.8 173 61.8
Eucgr.F03553 Eucalyptus grandis HOM05D006705 ORTHO05D008179 4.1e-51 207.2 168 64.9
MBI08_g41522_MAGBIO Magnolia biondii HOM05D006705 ORTHO05D008179 9.1e-51 206.1 287 47.4
HPP92_000875 Vanilla planifolia HOM05D006705 ORTHO05D008179 2.4e-43 181.4 242 43.8
ATR0661G389 Amborella trichopoda HOM05D006705 ORTHO05D008179 1.4e-35 155.6 217 42.4
SEGI_04333 Sequoiadendron giganteum HOM05D006705 ORTHO05D000002 1.9e-32 145.2 193 42.0
Mapoly0048s0090 Marchantia polymorpha HOM05D006705 ORTHO05D008179 5.7e-29 133.7 223 35.4
Zm00001eb323580 Zea mays HOM05D006705 ORTHO05D008179 1.1e-27 129.4 253 35.2
Os07g0548300 Oryza sativa ssp. japonica HOM05D006705 ORTHO05D008179 1.6e-26 125.6 252 34.9
Eucgr.F03554 Eucalyptus grandis HOM05D006705 ORTHO05D008179 1.7e-25 122.1 87 72.4
Nitab4.5_0002710g0130 Nicotiana tabacum HOM05D006705 ORTHO05D008179 1.9e-24 118.6 88 69.3
AagrBONN_evm.TU.Sc2ySwM_362.1316 Anthoceros agrestis HOM05D006705 ORTHO05D008179 1.2e-21 109.4 175 36.6
SMO180G0012 Selaginella moellendorffii HOM05D006705 ORTHO05D008179 7.5e-21 106.7 177 33.9
CDE02G4098 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 5.4e-19 100.5 58 84.5
FvH4_5g30181 Fragaria vesca HOM05D006705 ORTHO05D008179 1.3e-17 95.9 81 58.0
Gohir.D06G036701 Gossypium hirsutum HOM05D006705 ORTHO05D008179 1.3e-17 95.9 62 74.2
Gorai.010G041000 Gossypium raimondii HOM05D006705 ORTHO05D008179 2.3e-17 95.1 76 64.5
Gohir.D05G336850 Gossypium hirsutum HOM05D006705 ORTHO05D008179 7.2e-16 90.1 66 71.2
PGR142G2334 Punica granatum HOM05D007456 ORTHO05D009411 2.4e-11 75.1 53 64.2
Cc11_g03880 Coffea canephora HOM05D007456 ORTHO05D009411 3.1e-11 74.7 76 50.0
BcaNung05253 Brassica carinata HOM05D006705 ORTHO05D008179 5.4e-11 73.9 58 62.1
CDE02G0006 Ceratophyllum demersum HOM05D007456 ORTHO05D009411 7.0e-11 73.6 79 46.8
Lj1C1032G4 Lonicera japonica HOM05D007456 ORTHO05D009411 9.2e-11 73.2 55 58.2
Lsat_1_v5_gn_4_134121 Lactuca sativa HOM05D007456 ORTHO05D009411 7.8e-10 70.1 87 44.8
Pp3c11_21930 Physcomitrium patens HOM05D006705 ORTHO05D008179 2.3e-09 68.6 247 25.1
HPP92_008353 Vanilla planifolia HOM05D006705 ORTHO05D008179 3.3e-08 64.7 53 50.9
Gohir.D06G157800 Gossypium hirsutum HOM05D000485 ORTHO05D000341 1.8e-06 58.9 36 75.0
TPR.G30250 Trifolium pratense HOM05D000855 ORTHO05D008530 1.8e-06 58.9 139 29.5
FAN22G0140 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.3e-06 58.5 208 25.5
FAN07G1607 Fragaria x ananassa HOM05D000001 ORTHO05D000003 6.8e-06 57.0 208 25.0
Lsat_1_v5_gn_9_24741 Lactuca sativa HOM05D000001 ORTHO05D010418 8.9e-06 56.6 138 29.7
Lj5C471T0 Lonicera japonica HOM05D000001 ORTHO05D009582 8.9e-06 56.6 138 29.7


User provided reference genes

Program Settings