Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62035192 Chenopodium quinoa HOM05D005978 ORTHO05D007472 0.0e+00 2234.9 1121 100.0
AUR62042533 Chenopodium quinoa HOM05D005978 ORTHO05D007472 0.0e+00 1880.1 1167 84.8
EL10Ac1g01856 Beta vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1530.8 1167 69.3
Hund05194 Selenicereus undatus HOM05D005978 ORTHO05D007472 0.0e+00 1341.3 1159 62.1
TAR376G0648 Trochodendron aralioides HOM05D005978 ORTHO05D007472 0.0e+00 1143.3 1167 53.1
Dinv30321 Davidia involucrata HOM05D005978 ORTHO05D007472 0.0e+00 1139.0 1165 53.4
Nn6g31553 Nelumbo nucifera HOM05D005978 ORTHO05D007472 0.0e+00 1107.4 1177 50.8
GSVIVG01013460001 Vitis vinifera HOM05D005978 ORTHO05D007472 0.0e+00 1105.9 1159 52.4
Atru.chr13.20 Acer truncatum HOM05D005978 ORTHO05D007472 0.0e+00 1103.2 1162 52.0
CiPaw.08G079000 Carya illinoinensis HOM05D005978 ORTHO05D007472 0.0e+00 1082.8 1165 51.5
Manes.18G000350 Manihot esculenta HOM05D005978 ORTHO05D007472 0.0e+00 1082.0 1162 49.7
TWI36G1144 Tripterygium wilfordii HOM05D005978 ORTHO05D007472 0.0e+00 1075.5 1163 50.6
Ciclev10003766m.g Citrus clementina HOM05D005978 ORTHO05D007472 3.9e-311 1071.6 1158 50.9
MD06G1000600 Malus domestica HOM05D005978 ORTHO05D007472 1.7e-309 1066.2 1170 51.1
Thecc.08G097500 Theobroma cacao HOM05D005978 ORTHO05D007472 1.5e-308 1063.1 1167 50.8
Actinidia15540 Actinidia chinensis HOM05D005978 ORTHO05D007472 2.5e-308 1062.4 1166 51.2
Migut.M00377 Erythranthe guttata HOM05D005978 ORTHO05D007472 7.3e-308 1060.8 1161 50.5
Prupe.5G001100 Prunus persica HOM05D005978 ORTHO05D007472 5.8e-305 1051.2 1167 51.8
Haze_22888 Corylus avellana HOM05D005978 ORTHO05D007472 2.4e-303 1045.8 1123 52.2
Potri.002G001700 Populus trichocarpa HOM05D005978 ORTHO05D007472 5.4e-303 1044.6 1165 49.1
QL02p016300 Quercus lobata HOM05D005978 ORTHO05D007472 5.4e-303 1044.6 1381 44.9
RcHm_v2.0_Chr7g0217581 Rosa chinensis HOM05D005978 ORTHO05D007472 2.7e-302 1042.3 1171 50.4
MBI04_g23900_MAGBIO Magnolia biondii HOM05D005978 ORTHO05D007472 6.0e-302 1041.2 1200 47.7
Gorai.009G185700 Gossypium raimondii HOM05D005978 ORTHO05D007472 5.0e-301 1038.1 1174 49.5
Glyma.01G245200 Glycine max HOM05D005978 ORTHO05D007472 2.1e-299 1032.7 1174 48.8
FAN18G0791 Fragaria x ananassa HOM05D005978 ORTHO05D007472 6.2e-299 1031.2 1168 49.7
FvH4_5g26690 Fragaria vesca HOM05D005978 ORTHO05D007472 5.2e-298 1028.1 1168 49.7
SGA_v2.0_scaffold34G13893 Striga asiatica HOM05D005978 ORTHO05D007472 2.6e-297 1025.8 1041 52.4
Sc26g0004780 Simmondsia chinensis HOM05D005978 ORTHO05D007472 1.3e-296 1023.5 1162 50.1
Cc10_g00090 Coffea canephora HOM05D005978 ORTHO05D007472 2.7e-294 1015.8 1160 50.0
TPR.G21607 Trifolium pratense HOM05D005978 ORTHO05D007472 7.8e-294 1014.2 1156 49.0
FAN13G0154 Fragaria x ananassa HOM05D005978 ORTHO05D007472 1.0e-293 1013.8 1168 49.1
Medtr5g004660 Medicago truncatula HOM05D005978 ORTHO05D007472 3.0e-293 1012.3 1164 48.4
Ah.11g042550 Amaranthus hybridus HOM05D005978 ORTHO05D007472 5.1e-293 1011.5 787 68.1
CANSAT64G0954 Cannabis sativa HOM05D005978 ORTHO05D007472 1.2e-291 1006.9 1176 48.1
PSO675G6081 Papaver somniferum HOM05D005978 ORTHO05D007472 1.2e-291 1006.9 1153 48.1
Phvul.002G054600 Phaseolus vulgaris HOM05D005978 ORTHO05D007472 1.2e-291 1006.9 1148 48.1
AL2G36770 Arabidopsis lyrata HOM05D005978 ORTHO05D007472 2.8e-291 1005.7 1160 47.9
PSO541G4404 Papaver somniferum HOM05D005978 ORTHO05D007472 6.2e-291 1004.6 1161 47.9
PGR031G1913 Punica granatum HOM05D005978 ORTHO05D007472 1.8e-290 1003.0 1165 48.6
Lj1g0010496 Lotus japonicus HOM05D005978 ORTHO05D007472 2.0e-289 999.6 1178 47.6
MSTRG.14837 Avicennia marina HOM05D005978 ORTHO05D007472 3.4e-289 998.8 1163 48.6
Lalb_Chr16g0376221 Lupinus albus HOM05D005978 ORTHO05D007472 3.4e-289 998.8 1152 48.6
Sopen04g036610 Solanum pennellii HOM05D005978 ORTHO05D007472 2.2e-288 996.1 1171 48.2
arahy.Tifrunner.gnm1.ann1.U7IYJM Arachis hypogaea HOM05D005978 ORTHO05D007472 2.9e-288 995.7 1146 47.7
ECA232G2674 Erigeron canadensis HOM05D005978 ORTHO05D007472 2.9e-288 995.7 1155 48.7
AT1G76630 Arabidopsis thaliana HOM05D005978 ORTHO05D007472 8.4e-288 994.2 1160 47.4
Sabra02G0001200 Salix brachista HOM05D005978 ORTHO05D007472 8.4e-288 994.2 1205 46.2
BcaC08g47227 Brassica carinata HOM05D005978 ORTHO05D007472 1.1e-287 993.8 1156 48.0
A07p42300 Brassica napus HOM05D005978 ORTHO05D007472 2.4e-287 992.6 1161 47.9
ClCG11G019200 Citrullus lanatus HOM05D005978 ORTHO05D007472 9.2e-287 990.7 1197 46.5
arahy.Tifrunner.gnm1.ann1.BP04P6 Arachis hypogaea HOM05D005978 ORTHO05D007472 3.5e-286 988.8 1152 47.4
BraA07t31758Z Brassica rapa HOM05D005978 ORTHO05D007472 1.0e-285 987.3 1162 47.4
Eucgr.F03624 Eucalyptus grandis HOM05D005978 ORTHO05D007472 1.3e-285 986.9 1169 47.6
BolC6t40113H Brassica oleracea HOM05D005978 ORTHO05D007472 2.3e-285 986.1 1161 47.7
HanXRQChr16g0512201 Helianthus annuus HOM05D005978 ORTHO05D007472 3.0e-285 985.7 1159 48.1
FAN04G0649 Fragaria x ananassa HOM05D005978 ORTHO05D007472 3.9e-285 985.3 1168 48.5
Rhsim06G0000600 Rhododendron simsii HOM05D005978 ORTHO05D007472 1.5e-284 983.4 1371 43.3
SalBow7G3859 Salvia bowleyana HOM05D005978 ORTHO05D007472 1.5e-284 983.4 1159 48.2
C06p50880 Brassica napus HOM05D005978 ORTHO05D007472 5.6e-284 981.5 1161 47.6
Cpa.g.sc36.98 Carica papaya HOM05D005978 ORTHO05D007472 1.4e-282 976.9 1198 47.3
CAN.G1330.32 Capsicum annuum HOM05D005978 ORTHO05D007472 5.2e-282 974.9 1166 47.5
COL.COLO4_12265 Corchorus olitorius HOM05D005978 ORTHO05D007472 6.9e-282 974.5 1158 48.3
Sed0020914 Sechium edule HOM05D005978 ORTHO05D007472 5.8e-281 971.5 1159 46.5
Aqoxy1G03258 Aquilegia oxysepala HOM05D005978 ORTHO05D007472 6.4e-280 968.0 1153 48.2
Duzib041G0071 Durio zibethinus HOM05D005978 ORTHO05D007472 8.4e-280 967.6 1171 47.3
CARHR070190 Cardamine hirsuta HOM05D005978 ORTHO05D007472 2.4e-279 966.1 1162 46.1
Lsat_1_v5_gn_9_48081 Lactuca sativa HOM05D005978 ORTHO05D007472 3.2e-279 965.7 1167 47.8
Gohir.A05G177300 Gossypium hirsutum HOM05D005978 ORTHO05D007472 1.3e-277 960.3 999 52.0
BcaC08g47175 Brassica carinata HOM05D005978 ORTHO05D007472 3.6e-275 952.2 1167 46.6
CsaV3_4G037800 Cucumis sativus L. HOM05D005978 ORTHO05D007472 2.4e-271 939.5 1159 46.4
MELO3C017073.2 Cucumis melo HOM05D005978 ORTHO05D007472 6.0e-270 934.9 1161 45.9
Carub.0002s2353 Capsella rubella HOM05D005978 ORTHO05D007472 2.3e-269 932.9 1160 45.8
Thhalv10018029m.g Eutrema salsugineum HOM05D005978 ORTHO05D007472 5.6e-268 928.3 1164 46.1
Sp5g31790 Schrenkiella parvula HOM05D005978 ORTHO05D007472 1.1e-266 924.1 1159 46.1
Psat4g213520 Pisum sativum HOM05D005978 ORTHO05D007472 4.8e-259 898.7 1001 49.4
THA.LOC104812025 Tarenaya hassleriana HOM05D005978 ORTHO05D007472 4.8e-259 898.7 1166 44.9
Ca_24335_v3 Cicer arietinum L. HOM05D005978 ORTHO05D007472 1.9e-255 886.7 1059 47.6
HPP92_007456 Vanilla planifolia HOM05D005978 ORTHO05D007472 1.1e-252 877.5 1176 43.8
Aa31LG4G6720 Aethionema arabicum HOM05D005978 ORTHO05D007472 1.1e-250 870.9 1160 44.4
Zm00001eb022830 Zea mays HOM05D005978 ORTHO05D007472 3.6e-246 855.9 1176 42.5
Os10g0548200 Oryza sativa ssp. japonica HOM05D005978 ORTHO05D007472 9.1e-242 841.3 1178 41.5
ATR0605G322 Amborella trichopoda HOM05D005978 ORTHO05D007472 5.9e-241 838.6 1123 43.5
Solyc04g082980.2 Solanum lycopersicum HOM05D005978 ORTHO05D007472 2.1e-238 830.1 1065 46.1
SEGI_31935 Sequoiadendron giganteum HOM05D005978 ORTHO05D007472 1.8e-234 817.0 1167 41.8
CSS0007221 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 1.1e-226 791.2 743 58.0
Peaxi162Scf00385g01220 Petunia axillaris HOM05D005978 ORTHO05D007472 3.8e-224 782.7 1206 41.5
unitig_899.g15248 Utricularia gibba HOM05D005978 ORTHO05D007472 4.0e-213 746.1 1040 42.6
FAN08G2840 Fragaria x ananassa HOM05D005978 ORTHO05D007472 2.9e-208 729.9 1107 41.6
DCAR_022963 Daucus carota HOM05D005978 ORTHO05D007472 1.5e-207 727.6 758 53.2
Gohir.D05G180700 Gossypium hirsutum HOM05D005978 ORTHO05D007472 1.1e-170 605.1 706 48.3
Nitab4.5_0003364g0020 Nicotiana tabacum HOM05D005978 ORTHO05D007472 1.4e-165 588.2 753 45.9
Mapoly0002s0268 Marchantia polymorpha HOM05D005978 ORTHO05D007472 9.6e-143 512.3 1176 31.7
CDE04G2732 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 2.6e-132 477.6 579 47.3
Ah.11g042540 Amaranthus hybridus HOM05D005978 ORTHO05D007472 9.7e-127 459.1 331 68.3
Oeu013500.1 Olea europaea HOM05D005978 ORTHO05D007472 2.4e-125 454.5 567 45.0
Pp3c9_11110 Physcomitrium patens HOM05D005978 ORTHO05D007472 6.9e-125 453.0 1157 30.9
Dinv04441 Davidia involucrata HOM05D005978 ORTHO05D007472 2.0e-111 408.3 402 54.5
AagrBONN_evm.TU.Sc2ySwM_228.3882 Anthoceros agrestis HOM05D005978 ORTHO05D007472 1.8e-96 358.6 766 33.9
vmacro21736 Vaccinium macrocarpon HOM05D005978 ORTHO05D007472 2.2e-94 351.7 333 54.4
Dinv04443 Davidia involucrata HOM05D005978 ORTHO05D007472 2.0e-92 345.1 426 47.2
Nitab4.5_0003364g0080 Nicotiana tabacum HOM05D005978 ORTHO05D007472 1.3e-91 342.4 416 46.6
SMO236G0050 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 4.2e-90 337.4 1093 29.4
SMO236G0024 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 2.3e-75 288.5 526 35.4
Dinv04442 Davidia involucrata HOM05D005978 ORTHO05D007472 8.6e-59 233.4 176 69.3
Gohir.D05G180650 Gossypium hirsutum HOM05D005978 ORTHO05D007472 2.5e-58 231.9 204 56.9
SHI07937 Sapria himalayana HOM05D005978 ORTHO05D007472 4.6e-52 211.1 296 42.9
Nn6g31559 Nelumbo nucifera HOM05D005978 ORTHO05D007472 1.1e-42 179.9 218 48.2
arahy.Tifrunner.gnm1.ann1.G030KM Arachis hypogaea HOM05D005978 ORTHO05D007472 6.9e-40 170.6 199 48.7
CBR_g3864 Chara braunii HOM05D000019 ORTHO05D000048 3.4e-39 168.3 1119 23.4
CDE04G3357 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 6.4e-38 164.1 215 40.5
Oeu013502.1 Olea europaea HOM05D005978 ORTHO05D007472 2.8e-33 148.7 184 47.3
SMO124G0009 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 5.3e-32 144.4 200 37.0
CSS0044033 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 3.5e-28 131.7 114 57.9
AUR62017200 Chenopodium quinoa HOM05D006152 ORTHO05D008137 5.1e-27 127.9 62 95.2
SHI07938 Sapria himalayana HOM05D005978 ORTHO05D007472 6.3e-25 120.9 146 42.5
arahy.Tifrunner.gnm1.ann1.IN83YX Arachis hypogaea HOM05D005978 ORTHO05D007472 3.8e-14 85.1 67 58.2
arahy.Tifrunner.gnm1.ann1.HEP796 Arachis hypogaea HOM05D005978 ORTHO05D007472 1.6e-12 79.7 53 66.0
SHI07939 Sapria himalayana HOM05D005978 ORTHO05D007472 1.4e-11 76.6 115 42.6
Prupe.4G218400 Prunus persica HOM05D005978 ORTHO05D007472 3.9e-11 75.1 53 71.7
TAR628G1490 Trochodendron aralioides HOM05D005978 ORTHO05D007472 2.0e-07 62.8 50 64.0
AUR62042547 Chenopodium quinoa HOM05D005978 ORTHO05D138224 1.0e-06 60.5 37 78.4
arahy.Tifrunner.gnm1.ann1.5RG0UU Arachis hypogaea HOM05D006523 ORTHO05D008212 2.2e-06 59.3 57 56.1
arahy.Tifrunner.gnm1.ann1.CI9DXK Arachis hypogaea HOM05D005978 ORTHO05D007472 2.2e-06 59.3 48 58.3


User provided reference genes

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