Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62034308 Chenopodium quinoa HOM05D001406 ORTHO05D006300 0.0e+00 2425.6 1277 100.0
AUR62025017 Chenopodium quinoa HOM05D001406 ORTHO05D006300 0.0e+00 2214.9 1203 96.9
EL10Ac3g06610 Beta vulgaris HOM05D001406 ORTHO05D006300 0.0e+00 1820.8 1361 73.7
Hund20543 Selenicereus undatus HOM05D001406 ORTHO05D006300 0.0e+00 1718.0 1353 70.2
Ah.04g153610 Amaranthus hybridus HOM05D001406 ORTHO05D006300 0.0e+00 1674.8 1350 69.2
CSS0049595 Camellia sinensis var. sinensis HOM05D001406 ORTHO05D006300 0.0e+00 1491.9 1355 61.8
Haze_01188 Corylus avellana HOM05D001406 ORTHO05D006300 0.0e+00 1478.0 1353 61.0
Dinv44369 Davidia involucrata HOM05D001406 ORTHO05D006300 0.0e+00 1467.2 1339 61.3
Cfa015397 Carpinus fangiana HOM05D001406 ORTHO05D006300 0.0e+00 1463.4 1352 60.6
Hma1.2p1_1185F.1_g265020 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 0.0e+00 1455.3 1353 60.1
QL06p009115 Quercus lobata HOM05D001406 ORTHO05D006300 0.0e+00 1438.3 1200 64.7
CiPaw.01G147700 Carya illinoinensis HOM05D001406 ORTHO05D006300 0.0e+00 1437.6 1364 59.5
Lj6C678T4 Lonicera japonica HOM05D001406 ORTHO05D006300 0.0e+00 1435.2 1357 59.9
Actinidia00013 Actinidia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1431.8 1235 64.3
Nn4g25794 Nelumbo nucifera HOM05D001406 ORTHO05D006300 0.0e+00 1426.4 1366 59.2
Duzib212G0336 Durio zibethinus HOM05D001406 ORTHO05D006300 0.0e+00 1423.3 1352 59.2
Thecc.04G286100 Theobroma cacao HOM05D001406 ORTHO05D006300 0.0e+00 1412.1 1358 59.1
CAN.G484.37 Capsicum annuum HOM05D001406 ORTHO05D006300 0.0e+00 1400.2 1339 59.4
TAR370G0006 Trochodendron aralioides HOM05D001406 ORTHO05D006300 0.0e+00 1395.6 1366 58.4
Rhsim02G0008400 Rhododendron simsii HOM05D001406 ORTHO05D006300 0.0e+00 1394.0 1391 57.4
PGSC0003DMG401004707 Solanum tuberosum HOM05D001406 ORTHO05D006300 0.0e+00 1390.9 1348 59.4
Gorai.011G191000 Gossypium raimondii HOM05D001406 ORTHO05D006300 0.0e+00 1387.5 1233 61.3
Gohir.D10G170900 Gossypium hirsutum HOM05D001406 ORTHO05D006300 0.0e+00 1385.5 1232 61.3
Sopen12g034190 Solanum pennellii HOM05D001406 ORTHO05D006300 0.0e+00 1374.8 1224 62.6
vmacro15227 Vaccinium macrocarpon HOM05D001406 ORTHO05D006300 0.0e+00 1374.0 1268 61.1
Potri.010G013300 Populus trichocarpa HOM05D001406 ORTHO05D006300 0.0e+00 1370.9 1229 61.8
GSVIVG01017722001 Vitis vinifera HOM05D001406 ORTHO05D006300 0.0e+00 1370.5 1327 59.2
MD16G1167900 Malus domestica HOM05D001406 ORTHO05D006300 0.0e+00 1369.0 1361 57.4
TWI53G1101 Tripterygium wilfordii HOM05D001406 ORTHO05D006300 0.0e+00 1368.6 1377 56.9
Cc03_g01780 Coffea canephora HOM05D001406 ORTHO05D006300 0.0e+00 1362.4 1364 57.8
Sabra10G0008500 Salix brachista HOM05D001406 ORTHO05D006300 0.0e+00 1360.1 1318 59.2
Sc13g0003410 Simmondsia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1360.1 1229 62.0
Sed0021428 Sechium edule HOM05D001406 ORTHO05D006300 0.0e+00 1359.0 1220 60.8
arahy.Tifrunner.gnm1.ann1.4JB89L Arachis hypogaea HOM05D001406 ORTHO05D006300 0.0e+00 1354.0 1360 55.7
Cpa.g.sc16.181 Carica papaya HOM05D001406 ORTHO05D006300 0.0e+00 1354.0 1225 61.5
Solyc12g099510.3 Solanum lycopersicum HOM05D001406 ORTHO05D006300 0.0e+00 1351.7 1204 62.5
Aqoxy2G02952 Aquilegia oxysepala HOM05D001406 ORTHO05D006300 0.0e+00 1349.3 1367 56.1
RcHm_v2.0_Chr4g0422791 Rosa chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1349.0 1195 61.7
Gohir.A10G164700 Gossypium hirsutum HOM05D001406 ORTHO05D006300 0.0e+00 1345.1 1360 56.2
Sp7g14340 Schrenkiella parvula HOM05D001406 ORTHO05D006300 0.0e+00 1338.6 1222 61.5
MSTRG.3907 Avicennia marina HOM05D001406 ORTHO05D006300 0.0e+00 1338.2 1276 59.2
FvH4_4g18310 Fragaria vesca HOM05D001406 ORTHO05D006300 0.0e+00 1337.0 1229 60.2
Oeu026316.2 Olea europaea HOM05D001406 ORTHO05D006300 0.0e+00 1336.2 1352 57.4
FAN12G0087 Fragaria x ananassa HOM05D001406 ORTHO05D006300 0.0e+00 1335.1 1195 61.2
BolC7t45276H Brassica oleracea HOM05D001406 ORTHO05D006300 0.0e+00 1333.9 1239 61.1
CANSAT78G1952 Cannabis sativa HOM05D001406 ORTHO05D006300 0.0e+00 1330.1 1217 59.7
Thhalv10024228m.g Eutrema salsugineum HOM05D001406 ORTHO05D006300 0.0e+00 1330.1 1226 60.8
BraA03t14045Z Brassica rapa HOM05D001406 ORTHO05D006300 0.0e+00 1329.7 1236 60.8
FAN12G4194 Fragaria x ananassa HOM05D001406 ORTHO05D006300 0.0e+00 1326.6 1229 59.9
A03p49440 Brassica napus HOM05D001406 ORTHO05D006300 0.0e+00 1325.8 1210 61.6
CARHR290420 Cardamine hirsuta HOM05D001406 ORTHO05D006300 0.0e+00 1323.9 1224 60.3
MBI19_g25352_MAGBIO Magnolia biondii HOM05D001406 ORTHO05D006300 0.0e+00 1321.6 1374 55.7
Carub.0007s2577 Capsella rubella HOM05D001406 ORTHO05D006300 0.0e+00 1316.2 1227 59.8
Psat1g154920 Pisum sativum HOM05D001406 ORTHO05D006300 0.0e+00 1315.4 1192 59.4
Glyma.09G044100 Glycine max HOM05D001406 ORTHO05D006300 0.0e+00 1313.9 1236 58.6
BcaC06g32972 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1313.1 1245 60.2
Ca_01929_v3 Cicer arietinum L. HOM05D001406 ORTHO05D006300 0.0e+00 1312.7 1357 54.8
AL7G39380 Arabidopsis lyrata HOM05D001406 ORTHO05D006300 0.0e+00 1310.8 1236 60.0
Phvul.009G248800 Phaseolus vulgaris HOM05D001406 ORTHO05D006300 0.0e+00 1310.4 1239 58.4
Peaxi162Scf00646g00226 Petunia axillaris HOM05D001406 ORTHO05D006300 0.0e+00 1308.1 1225 60.7
BcaC06g33438 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1307.0 1239 60.4
Atru.chr4.2868 Acer truncatum HOM05D001406 ORTHO05D006300 0.0e+00 1304.3 1294 58.3
AT4G15890 Arabidopsis thaliana HOM05D001406 ORTHO05D006300 0.0e+00 1303.5 1239 59.7
Migut.G00150 Erythranthe guttata HOM05D001406 ORTHO05D006300 0.0e+00 1302.0 1347 55.8
Ciclev10004172m.g Citrus clementina HOM05D001406 ORTHO05D006300 0.0e+00 1299.6 1112 63.6
VMungo1309G1537 Vigna mungo HOM05D001406 ORTHO05D006300 0.0e+00 1297.3 1239 57.5
Glyma.15G149000 Glycine max HOM05D001406 ORTHO05D006300 0.0e+00 1295.8 1337 55.2
Aa31LG10G6250 Aethionema arabicum HOM05D001406 ORTHO05D006300 0.0e+00 1293.1 1231 59.8
arahy.Tifrunner.gnm1.ann1.Q4RDUH Arachis hypogaea HOM05D001406 ORTHO05D006300 0.0e+00 1291.9 1402 53.3
HanXRQChr16g0501031 Helianthus annuus HOM05D001406 ORTHO05D006300 0.0e+00 1283.9 1231 59.2
PSO210G3685 Papaver somniferum HOM05D001406 ORTHO05D006300 0.0e+00 1283.5 1191 59.8
Actinidia14294 Actinidia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1280.8 1212 60.6
PSO170G4998 Papaver somniferum HOM05D001406 ORTHO05D006300 0.0e+00 1278.5 1191 59.2
SalBow2G2741 Salvia bowleyana HOM05D001406 ORTHO05D006300 0.0e+00 1275.8 1355 54.7
Medtr2g436590 Medicago truncatula HOM05D001406 ORTHO05D006300 0.0e+00 1272.7 1188 58.2
ECA232G4578 Erigeron canadensis HOM05D001406 ORTHO05D006300 0.0e+00 1267.3 1264 57.9
Nitab4.5_0000570g0200 Nicotiana tabacum HOM05D001406 ORTHO05D006300 0.0e+00 1264.2 1351 55.6
Lj6g0019990 Lotus japonicus HOM05D001406 ORTHO05D006300 0.0e+00 1263.1 1191 59.5
TPR.G26890 Trifolium pratense HOM05D001406 ORTHO05D006300 0.0e+00 1262.3 1225 56.7
Eucgr.C00455 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1259.6 1236 57.2
THA.LOC104821780 Tarenaya hassleriana HOM05D001406 ORTHO05D006300 0.0e+00 1258.4 1214 58.1
BcaC08g43650 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1257.3 1206 59.7
PGR031G1922 Punica granatum HOM05D001406 ORTHO05D006300 0.0e+00 1236.9 1219 57.1
ClCG06G005070 Citrullus lanatus HOM05D001406 ORTHO05D006300 0.0e+00 1228.0 1355 53.1
SGA_v2.0_scaffold67G22623 Striga asiatica HOM05D001406 ORTHO05D006300 0.0e+00 1219.1 1095 60.7
Eucgr.C00460 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1216.1 1236 56.3
C06p10680 Brassica napus HOM05D001406 ORTHO05D006300 0.0e+00 1196.0 1104 61.1
BolC6t36150H Brassica oleracea HOM05D001406 ORTHO05D006300 0.0e+00 1187.6 1115 60.4
Lj6g0027272 Lotus japonicus HOM05D001406 ORTHO05D006300 0.0e+00 1185.6 1212 55.9
Nitab4.5_0003466g0080 Nicotiana tabacum HOM05D001406 ORTHO05D006300 0.0e+00 1140.9 1050 60.1
Lsat_1_v5_gn_6_95741 Lactuca sativa HOM05D001406 ORTHO05D006300 0.0e+00 1114.8 1409 49.9
SHI00255 Sapria himalayana HOM05D001406 ORTHO05D006300 0.0e+00 1102.4 1250 52.0
QL06p009350 Quercus lobata HOM05D001406 ORTHO05D006300 0.0e+00 1080.9 903 64.1
DCAR_002468 Daucus carota HOM05D001406 ORTHO05D006300 4.3e-309 1065.1 1186 51.7
Manes.03G196500 Manihot esculenta HOM05D001406 ORTHO05D006300 7.8e-303 1044.3 1063 56.2
Eucgr.C00332 Eucalyptus grandis HOM05D001406 ORTHO05D006300 6.6e-302 1041.2 975 59.0
Zm00001eb410230 Zea mays HOM05D001406 ORTHO05D006300 1.4e-299 1033.5 1179 51.1
Os12g0548100 Oryza sativa ssp. japonica HOM05D001406 ORTHO05D006300 1.4e-291 1006.9 1177 51.0
COL.COLO4_13851 Corchorus olitorius HOM05D001406 ORTHO05D006300 3.2e-288 995.7 1353 46.8
CDE02G0109 Ceratophyllum demersum HOM05D001406 ORTHO05D006300 1.8e-286 989.9 1199 49.5
HPP92_015972 Vanilla planifolia HOM05D001406 ORTHO05D006300 4.8e-284 981.9 1183 49.7
Prupe.1G134700 Prunus persica HOM05D001406 ORTHO05D006300 2.2e-260 903.3 846 59.1
Lalb_Chr18g0051641 Lupinus albus HOM05D001406 ORTHO05D006300 3.9e-246 855.9 950 51.8
CsaV3_UNG225770 Cucumis sativus L. HOM05D001406 ORTHO05D006300 4.2e-240 835.9 773 59.6
unitig_37.g12399 Utricularia gibba HOM05D001406 ORTHO05D006300 1.2e-237 827.8 910 52.1
MELO3C021323.2 Cucumis melo HOM05D001406 ORTHO05D006300 5.7e-229 798.9 817 55.1
Eucgr.C00337 Eucalyptus grandis HOM05D001406 ORTHO05D006300 5.9e-226 788.9 1174 44.7
Eucgr.C00258 Eucalyptus grandis HOM05D001406 ORTHO05D006300 1.5e-221 774.2 689 59.4
AagrBONN_evm.TU.Sc2ySwM_117.1301 Anthoceros agrestis HOM05D001406 ORTHO05D006300 6.3e-220 768.8 1282 40.7
Atru.chr4.2862 Acer truncatum HOM05D001406 ORTHO05D006300 2.3e-217 760.4 815 53.9
SMO144G0076 Selaginella moellendorffii HOM05D001406 ORTHO05D006300 2.3e-217 760.4 1117 43.6
Medtr7g110590 Medicago truncatula HOM05D001406 ORTHO05D006300 7.3e-208 728.8 1068 45.3
Hma1.2p1_1185F.1_g265030 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 6.2e-199 699.1 758 53.8
Mapoly0098s0043 Marchantia polymorpha HOM05D001406 ORTHO05D006300 1.4e-190 671.4 1313 36.9
CsaV3_UNG067570 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.4e-179 634.8 500 67.6
CsaV3_UNG044300 Cucumis sativus L. HOM05D001406 ORTHO05D006300 3.6e-175 620.2 833 45.7
CsaV3_UNG088690 Cucumis sativus L. HOM05D001406 ORTHO05D006300 2.1e-162 577.8 454 68.3
SEGI_32620 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 3.7e-151 540.4 931 38.8
C07p47490 Brassica napus HOM05D001406 ORTHO05D006300 5.5e-147 526.6 530 56.4
Lalb_Chr18g0051631 Lupinus albus HOM05D001406 ORTHO05D006300 2.9e-140 504.2 405 68.9
CBR_g31398 Chara braunii HOM05D001406 ORTHO05D006300 3.8e-140 503.8 1338 30.6
MELO3C035190.2 Cucumis melo HOM05D001406 ORTHO05D006300 2.4e-134 484.6 408 65.9
QL06p009358 Quercus lobata HOM05D001406 ORTHO05D006300 3.6e-106 391.0 340 64.1
SEGI_21479 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 6.8e-105 386.7 357 59.4
CsaV3_UNG067560 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.2e-88 332.8 322 55.3
Eucgr.C00458 Eucalyptus grandis HOM05D001406 ORTHO05D006300 7.1e-86 323.6 366 52.2
QL06p009360 Quercus lobata HOM05D001406 ORTHO05D006300 4.9e-79 300.8 273 62.6
Cre05.g241150 Chlamydomonas reinhardtii HOM05D001406 ORTHO05D006300 1.6e-74 285.8 1244 26.1
Oeu016245.1 Olea europaea HOM05D001406 ORTHO05D006300 6.8e-73 280.4 434 44.2
PRCOL_00006258 Prasinoderma coloniale HOM05D001406 ORTHO05D006300 4.4e-64 251.1 1123 25.4
QL06p009415 Quercus lobata HOM05D001406 ORTHO05D000006 1.3e-58 233.0 601 34.4
unitig_37.g12400 Utricularia gibba HOM05D001406 ORTHO05D004254 2.3e-52 212.2 222 54.1
Atru.chr4.2864 Acer truncatum HOM05D001406 ORTHO05D006300 3.8e-39 168.3 157 59.2
Atru.chr4.2865 Acer truncatum HOM05D001406 ORTHO05D006300 5.3e-33 147.9 105 74.3
Atru.chr4.2866 Acer truncatum HOM05D001406 ORTHO05D006300 4.5e-32 144.8 114 61.4
Atru.chr4.2867 Acer truncatum HOM05D001406 ORTHO05D006300 4.6e-29 134.8 81 84.0
AagrBONN_evm.TU.Sc2ySwM_368.2199 Anthoceros agrestis HOM05D001406 ORTHO05D006300 1.1e-27 130.2 232 38.8
HPP92_015965 Vanilla planifolia HOM05D001406 ORTHO05D006300 4.3e-27 128.3 112 58.0
CsaV3_UNG044290 Cucumis sativus L. HOM05D001406 ORTHO05D034998 1.8e-25 122.9 87 65.5
DCAR_006102 Daucus carota HOM05D001406 ORTHO05D006300 2.5e-22 112.5 115 52.2
Eucgr.D00108 Eucalyptus grandis HOM05D001406 ORTHO05D006300 3.9e-20 105.1 188 39.4
CsaV3_UNG075590 Cucumis sativus L. HOM05D001406 ORTHO05D034998 6.1e-13 81.3 89 52.8
Lsat_1_v5_gn_9_42060 Lactuca sativa HOM05D001406 ORTHO05D006300 4.8e-10 71.6 50 68.0
CsaV3_UNG075600 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.8e-09 69.7 75 50.7
CsaV3_UNG088700 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.8e-09 69.7 75 50.7
Sc13g0003400 Simmondsia chinensis HOM05D001406 ORTHO05D034998 1.2e-08 67.0 58 58.6
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 2.0e-08 66.2 67 52.2
Actinidia38152 Actinidia chinensis HOM05D004602 ORTHO05D005906 5.0e-07 61.6 135 25.9
ATR0745G001 Amborella trichopoda HOM05D004602 ORTHO05D005906 2.5e-06 59.3 135 27.4
Manes.08G057600 Manihot esculenta HOM05D004602 ORTHO05D005906 2.5e-06 59.3 135 25.9
QL06p009199 Quercus lobata HOM05D001406 ORTHO05D337037 2.5e-06 59.3 89 39.3
GSVIVG01033598001 Vitis vinifera HOM05D004602 ORTHO05D005906 3.2e-06 58.9 135 24.4
MD14G1099800 Malus domestica HOM05D004602 ORTHO05D005906 5.5e-06 58.2 135 24.4
Ca_26637_v3 Cicer arietinum L. HOM05D004602 ORTHO05D005906 7.2e-06 57.8 132 25.8
Sc19g0008270 Simmondsia chinensis HOM05D004602 ORTHO05D005906 7.2e-06 57.8 144 27.8
Aqoxy2G00344 Aquilegia oxysepala HOM05D004602 ORTHO05D005906 9.4e-06 57.4 138 24.6
DCAR_016876 Daucus carota HOM05D004602 ORTHO05D005906 9.4e-06 57.4 136 25.0
Duzib106G0250 Durio zibethinus HOM05D004602 ORTHO05D005906 9.4e-06 57.4 135 24.4
Lalb_Chr02g0156531 Lupinus albus HOM05D004602 ORTHO05D005906 9.4e-06 57.4 134 24.6


User provided reference genes

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