Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62033735 Chenopodium quinoa HOM05D004354 ORTHO05D005409 0.0e+00 1451.0 743 100.0
EL10Ac9g20792 Beta vulgaris HOM05D004354 ORTHO05D005409 4.2e-123 446.4 294 76.2
CiPaw.03G179000 Carya illinoinensis HOM05D004354 ORTHO05D005409 3.8e-116 423.3 294 70.7
Prupe.3G139300 Prunus persica HOM05D004354 ORTHO05D005409 8.5e-116 422.2 294 71.4
Manes.13G144800 Manihot esculenta HOM05D004354 ORTHO05D005409 1.1e-115 421.8 294 72.1
Lj1A714G27 Lonicera japonica HOM05D004354 ORTHO05D005409 1.4e-115 421.4 294 71.8
RcHm_v2.0_Chr2g0127681 Rosa chinensis HOM05D004354 ORTHO05D005409 3.2e-115 420.2 294 71.4
Hund01030 Selenicereus undatus HOM05D004354 ORTHO05D005409 4.2e-115 419.9 294 70.7
Thecc.02G182400 Theobroma cacao HOM05D004354 ORTHO05D005409 4.2e-115 419.9 294 71.4
GSVIVG01020571001 Vitis vinifera HOM05D004354 ORTHO05D005409 4.2e-115 419.9 294 70.7
Sc21g0003070 Simmondsia chinensis HOM05D004354 ORTHO05D005409 1.2e-114 418.3 294 70.4
CSS0014582 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 1.6e-114 417.9 294 70.7
Potri.017G012600 Populus trichocarpa HOM05D004354 ORTHO05D005409 1.6e-114 417.9 294 70.7
QL08p039658 Quercus lobata HOM05D004354 ORTHO05D005409 2.1e-114 417.5 293 70.0
Ciclev10014745m.g Citrus clementina HOM05D004354 ORTHO05D005409 2.7e-114 417.2 294 70.7
Thhalv10024798m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 3.6e-114 416.8 294 69.4
MD09G1244500 Malus domestica HOM05D004354 ORTHO05D005409 3.6e-114 416.8 294 70.4
FvH4_6g26490 Fragaria vesca HOM05D004354 ORTHO05D005409 4.7e-114 416.4 294 71.1
Glyma.13G295600 Glycine max HOM05D004354 ORTHO05D005409 4.7e-114 416.4 294 70.1
Cc05_g07440 Coffea canephora HOM05D004354 ORTHO05D005409 6.1e-114 416.0 294 70.7
COL.COLO4_05947 Corchorus olitorius HOM05D004354 ORTHO05D005409 6.1e-114 416.0 294 70.4
Actinidia11091 Actinidia chinensis HOM05D004354 ORTHO05D005409 1.4e-113 414.8 294 69.7
AT4G28370 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 1.4e-113 414.8 294 68.4
Phvul.005G102100 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 2.3e-113 414.1 294 69.4
VMungo1080G0203 Vigna mungo HOM05D004354 ORTHO05D005409 2.3e-113 414.1 294 69.4
FAN02G3736 Fragaria x ananassa HOM05D004354 ORTHO05D005409 3.0e-113 413.7 294 70.1
MD17G1236500 Malus domestica HOM05D004354 ORTHO05D005409 3.0e-113 413.7 294 70.7
Carub.0007s1237 Capsella rubella HOM05D004354 ORTHO05D005409 3.9e-113 413.3 294 67.7
CARHR236110 Cardamine hirsuta HOM05D004354 ORTHO05D005409 3.9e-113 413.3 294 69.4
Cfa014637 Carpinus fangiana HOM05D004354 ORTHO05D005409 3.9e-113 413.3 294 69.4
Dinv04814 Davidia involucrata HOM05D004354 ORTHO05D005409 3.9e-113 413.3 294 70.7
CANSAT64G2319 Cannabis sativa HOM05D004354 ORTHO05D005409 5.1e-113 412.9 294 69.0
Cpa.g.sc83.63 Carica papaya HOM05D004354 ORTHO05D005409 5.1e-113 412.9 294 69.7
Haze_13201 Corylus avellana HOM05D004354 ORTHO05D005409 5.1e-113 412.9 294 69.4
Rhsim06G0139400 Rhododendron simsii HOM05D004354 ORTHO05D005409 5.1e-113 412.9 294 69.4
TWI23G0225 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 6.7e-113 412.5 294 70.1
Aa31LG8G17560 Aethionema arabicum HOM05D004354 ORTHO05D005409 1.5e-112 411.4 294 69.0
Eucgr.K01043 Eucalyptus grandis HOM05D004354 ORTHO05D005409 2.0e-112 411.0 294 68.7
FAN05G5576 Fragaria x ananassa HOM05D004354 ORTHO05D005409 2.6e-112 410.6 298 70.1
Glyma.12G205300 Glycine max HOM05D004354 ORTHO05D005409 2.6e-112 410.6 294 69.4
Potri.007G139300 Populus trichocarpa HOM05D004354 ORTHO05D005409 2.6e-112 410.6 294 69.7
Gohir.A03G155600 Gossypium hirsutum HOM05D004354 ORTHO05D005409 3.3e-112 410.2 294 69.7
Aqoxy1G02375 Aquilegia oxysepala HOM05D004354 ORTHO05D005409 4.4e-112 409.8 294 70.7
Sp7g26330 Schrenkiella parvula HOM05D004354 ORTHO05D005409 4.4e-112 409.8 294 68.7
Hma1.2p1_0002F.1_g002080 Hydrangea macrophylla HOM05D004354 ORTHO05D005409 7.4e-112 409.1 294 70.7
Aa31LG2G22230 Aethionema arabicum HOM05D004354 ORTHO05D005409 9.7e-112 408.7 294 68.7
Gohir.D02G178700 Gossypium hirsutum HOM05D004354 ORTHO05D005409 9.7e-112 408.7 294 69.4
Gorai.005G200400 Gossypium raimondii HOM05D004354 ORTHO05D005409 9.7e-112 408.7 294 69.4
PGR142G0821 Punica granatum HOM05D004354 ORTHO05D005409 9.7e-112 408.7 294 68.4
Dinv13394 Davidia involucrata HOM05D004354 ORTHO05D005409 1.3e-111 408.3 294 70.1
Medtr4g078525 Medicago truncatula HOM05D004354 ORTHO05D005409 1.3e-111 408.3 294 69.4
Sopen07g027820 Solanum pennellii HOM05D004354 ORTHO05D005409 1.3e-111 408.3 294 69.7
Lj3g0011593 Lotus japonicus HOM05D004354 ORTHO05D005409 1.7e-111 407.9 294 68.0
PGSC0003DMG400032816 Solanum tuberosum HOM05D004354 ORTHO05D005409 1.7e-111 407.9 294 70.1
BcaB03g12570 Brassica carinata HOM05D004354 ORTHO05D005409 2.2e-111 407.5 294 68.0
Phvul.011G119730 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 2.8e-111 407.1 294 68.4
Solyc07g053850.3 Solanum lycopersicum HOM05D004354 ORTHO05D005409 2.8e-111 407.1 294 69.4
TPR.G2846 Trifolium pratense HOM05D004354 ORTHO05D005409 3.7e-111 406.8 294 68.4
BcaC07g38328 Brassica carinata HOM05D004354 ORTHO05D005409 1.4e-110 404.8 294 67.3
C08p10830 Brassica napus HOM05D004354 ORTHO05D005409 1.4e-110 404.8 294 67.3
Ca_18937_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 1.4e-110 404.8 294 67.7
Sopen12g001470 Solanum pennellii HOM05D004354 ORTHO05D005409 1.4e-110 404.8 294 69.4
AL7G24220 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 1.8e-110 404.4 294 66.7
Glyma.06G290800 Glycine max HOM05D004354 ORTHO05D005409 1.8e-110 404.4 294 68.0
arahy.Tifrunner.gnm1.ann1.5TEV2E Arachis hypogaea HOM05D004354 ORTHO05D005409 2.4e-110 404.1 294 69.0
BolC8t48758H Brassica oleracea HOM05D004354 ORTHO05D005409 2.4e-110 404.1 294 67.0
TWI59G0686 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 2.4e-110 404.1 294 68.4
Glyma.12G116100 Glycine max HOM05D004354 ORTHO05D005409 4.1e-110 403.3 294 68.0
Solyc12g005470.2 Solanum lycopersicum HOM05D004354 ORTHO05D005409 9.1e-110 402.1 294 69.4
Lj3g0017215 Lotus japonicus HOM05D004354 ORTHO05D005409 1.2e-109 401.7 294 66.7
Peaxi162Scf00008g00611 Petunia axillaris HOM05D004354 ORTHO05D005409 2.0e-109 401.0 294 69.4
MSTRG.6802 Avicennia marina HOM05D004354 ORTHO05D005409 5.9e-109 399.4 294 67.7
A08p20090 Brassica napus HOM05D004354 ORTHO05D005409 5.9e-109 399.4 294 67.0
BraA08t33968Z Brassica rapa HOM05D004354 ORTHO05D005409 5.9e-109 399.4 294 67.0
DCAR_009753 Daucus carota HOM05D004354 ORTHO05D005409 5.9e-109 399.4 294 67.3
PSO675G5152 Papaver somniferum HOM05D004354 ORTHO05D005409 5.9e-109 399.4 294 68.7
Nitab4.5_0001184g0100 Nicotiana tabacum HOM05D004354 ORTHO05D005409 1.0e-108 398.7 294 69.0
PSO541G1897 Papaver somniferum HOM05D004354 ORTHO05D005409 1.0e-108 398.7 294 68.7
Sp3g33900 Schrenkiella parvula HOM05D004354 ORTHO05D005409 1.0e-108 398.7 294 67.0
Thhalv10002192m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 2.2e-108 397.5 294 66.3
THA.LOC104804057 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 2.9e-108 397.1 294 66.7
Lsat_1_v5_gn_4_66820 Lactuca sativa HOM05D004354 ORTHO05D005409 3.8e-108 396.7 294 67.0
Nitab4.5_0006194g0010 Nicotiana tabacum HOM05D004354 ORTHO05D005409 3.8e-108 396.7 294 68.4
Lalb_Chr03g0029541 Lupinus albus HOM05D004354 ORTHO05D005409 8.5e-108 395.6 294 66.7
vmacro12326 Vaccinium macrocarpon HOM05D004354 ORTHO05D005409 1.4e-107 394.8 282 69.5
CDE05G0895 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 2.5e-107 394.0 294 65.6
Psat7g168720 Pisum sativum HOM05D004354 ORTHO05D005409 2.5e-107 394.0 295 67.1
Carub.0003s3517 Capsella rubella HOM05D004354 ORTHO05D005409 3.2e-107 393.7 294 66.0
Ca_09445_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 3.2e-107 393.7 294 66.7
AT2G20650 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 4.2e-107 393.3 294 65.6
Lalb_Chr19g0135191 Lupinus albus HOM05D004354 ORTHO05D005409 4.2e-107 393.3 294 65.3
AL3G53730 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 7.2e-107 392.5 294 65.3
CSS0000262 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 9.4e-107 392.1 294 67.3
BcaC06g36756 Brassica carinata HOM05D004354 ORTHO05D005409 3.6e-106 390.2 294 65.3
A07p00120 Brassica napus HOM05D004354 ORTHO05D005409 3.6e-106 390.2 294 65.0
C07p00280 Brassica napus HOM05D004354 ORTHO05D005409 3.6e-106 390.2 294 65.3
BolC7t40478H Brassica oleracea HOM05D004354 ORTHO05D005409 3.6e-106 390.2 294 65.3
BraA07t27805Z Brassica rapa HOM05D004354 ORTHO05D005409 8.0e-106 389.0 294 65.6
CARHR111300 Cardamine hirsuta HOM05D004354 ORTHO05D005409 8.0e-106 389.0 294 65.0
MBI18_g19626_MAGBIO Magnolia biondii HOM05D004354 ORTHO05D005409 1.4e-105 388.3 294 66.3
THA.LOC104824696 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 1.4e-105 388.3 297 65.0
arahy.Tifrunner.gnm1.ann1.SG72Z3 Arachis hypogaea HOM05D004354 ORTHO05D005409 3.0e-105 387.1 326 62.3
ECA234G2175 Erigeron canadensis HOM05D004354 ORTHO05D005409 3.0e-105 387.1 294 65.3
BcaB03g16858 Brassica carinata HOM05D004354 ORTHO05D005409 3.9e-105 386.7 294 65.0
Migut.M00279 Erythranthe guttata HOM05D004354 ORTHO05D005409 5.2e-105 386.3 294 65.0
Lalb_Chr01g0005151 Lupinus albus HOM05D004354 ORTHO05D005409 5.2e-105 386.3 294 64.3
CsaV3_6G015220 Cucumis sativus L. HOM05D004354 ORTHO05D005409 6.7e-105 386.0 294 67.3
MELO3C013588.2 Cucumis melo HOM05D004354 ORTHO05D005409 8.8e-105 385.6 294 67.3
Sed0026522 Sechium edule HOM05D004354 ORTHO05D005409 1.1e-104 385.2 294 67.3
Zm00001eb322160 Zea mays HOM05D004354 ORTHO05D005409 1.1e-104 385.2 294 65.6
ATR0763G074 Amborella trichopoda HOM05D004354 ORTHO05D005409 1.5e-104 384.8 294 67.0
TAR626G1453 Trochodendron aralioides HOM05D004354 ORTHO05D005409 7.4e-104 382.5 281 68.7
Oeu036067.1 Olea europaea HOM05D004354 ORTHO05D005409 2.2e-103 380.9 294 64.3
arahy.Tifrunner.gnm1.ann1.6AZK3P Arachis hypogaea HOM05D004354 ORTHO05D005409 4.8e-103 379.8 294 65.0
AUR62038896 Chenopodium quinoa HOM05D004354 ORTHO05D005409 4.8e-103 379.8 272 73.2
Sed0007610 Sechium edule HOM05D004354 ORTHO05D005409 6.3e-103 379.4 294 66.3
arahy.Tifrunner.gnm1.ann1.7S1AZB Arachis hypogaea HOM05D004354 ORTHO05D005409 8.2e-103 379.0 294 64.6
HanXRQChr05g0143301 Helianthus annuus HOM05D004354 ORTHO05D005409 2.0e-101 374.4 294 62.6
unitig_22.g5828 Utricularia gibba HOM05D004354 ORTHO05D005409 3.2e-99 367.1 295 63.4
Mapoly0093s0076 Marchantia polymorpha HOM05D004354 ORTHO05D005409 7.2e-99 365.9 300 62.0
Pp3c18_8870 Physcomitrium patens HOM05D004354 ORTHO05D005409 1.4e-97 361.7 299 59.9
SMO351G0175 Selaginella moellendorffii HOM05D004354 ORTHO05D005409 6.7e-97 359.4 300 61.3
Pp3c21_16510 Physcomitrium patens HOM05D004354 ORTHO05D005409 1.7e-95 354.8 300 59.0
Nn1g06483 Nelumbo nucifera HOM05D004354 ORTHO05D005409 6.5e-92 342.8 260 68.5
SEGI_11328 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 2.5e-91 340.9 272 59.6
FAN14G3021 Fragaria x ananassa HOM05D004354 ORTHO05D005409 7.2e-91 339.3 260 67.7
FAN09G2589 Fragaria x ananassa HOM05D004354 ORTHO05D005409 1.8e-89 334.7 261 67.0
PGSC0003DMG400013734 Solanum tuberosum HOM05D004354 ORTHO05D005409 9.8e-88 328.9 261 65.9
Nitab4.5_0000638g0120 Nicotiana tabacum HOM05D004354 ORTHO05D005409 6.3e-87 326.2 260 65.4
Peaxi162Scf01415g00030 Petunia axillaris HOM05D004354 ORTHO05D005409 2.4e-86 324.3 261 64.8
ClCG02G017760 Citrullus lanatus HOM05D004354 ORTHO05D005409 3.3e-83 313.9 298 59.4
CBR_g36920 Chara braunii HOM05D004354 ORTHO05D005409 1.3e-71 275.4 302 50.3
SGA_v2.0_scaffold70G23519 Striga asiatica HOM05D004354 ORTHO05D005409 1.7e-71 275.0 294 52.7
Nitab4.5_0001752g0070 Nicotiana tabacum HOM05D004354 ORTHO05D005409 3.5e-69 267.3 223 63.2
Atru.chr6.2897 Acer truncatum HOM05D004354 ORTHO05D005409 2.6e-56 224.6 193 61.7
SGA_v2.0_scaffold4316G54468 Striga asiatica HOM05D004354 ORTHO05D005409 8.3e-55 219.5 222 53.2
SEGI_25482 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 7.8e-53 213.0 200 54.0
PRCOL_00005121 Prasinoderma coloniale HOM05D000722 ORTHO05D000590 2.1e-45 188.3 325 32.9
MCO03G390 Micromonas commoda HOM05D004354 ORTHO05D005409 1.5e-43 182.2 283 38.2
Cre08.g381900 Chlamydomonas reinhardtii HOM05D004354 ORTHO05D005409 7.1e-30 136.7 393 25.2
TAR627G0937 Trochodendron aralioides HOM05D004354 ORTHO05D005409 9.3e-22 109.8 54 85.2
AUR62031605 Chenopodium quinoa HOM05D000759 ORTHO05D000574 2.4e-09 68.6 83 53.0
AUR62036405 Chenopodium quinoa HOM05D000929 ORTHO05D004813 3.1e-09 68.2 149 36.9
AUR62040861 Chenopodium quinoa HOM05D001410 ORTHO05D006840 3.1e-09 68.2 142 40.8
Cfa022079 Carpinus fangiana HOM05D004354 ORTHO05D124722 5.9e-08 63.9 80 35.0
AUR62032921 Chenopodium quinoa HOM05D002511 ORTHO05D003982 5.0e-07 60.8 183 38.3
HPP92_020305 Vanilla planifolia HOM05D000459 ORTHO05D000798 2.5e-06 58.5 78 30.8
MELO3C021991.2 Cucumis melo HOM05D000082 ORTHO05D000038 4.2e-06 57.8 55 34.5
Migut.D01577 Erythranthe guttata HOM05D000082 ORTHO05D000038 4.2e-06 57.8 67 35.8
Gorai.006G016300 Gossypium raimondii HOM05D000082 ORTHO05D000038 4.2e-06 57.8 51 41.2
PGSC0003DMG400000359 Solanum tuberosum HOM05D000634 ORTHO05D000517 4.2e-06 57.8 63 36.5
Gohir.A09G015300 Gossypium hirsutum HOM05D000082 ORTHO05D000038 5.5e-06 57.4 51 41.2
Gohir.D09G013700 Gossypium hirsutum HOM05D000082 ORTHO05D000038 5.5e-06 57.4 51 41.2
Gohir.D09G013800 Gossypium hirsutum HOM05D000082 ORTHO05D000038 5.5e-06 57.4 51 41.2
Gorai.006G015900 Gossypium raimondii HOM05D000082 ORTHO05D000038 5.5e-06 57.4 51 41.2
HPP92_020309 Vanilla planifolia HOM05D000459 ORTHO05D000798 5.5e-06 57.4 78 29.5
Ah.16g102310 Amaranthus hybridus HOM05D003103 ORTHO05D019548 7.2e-06 57.0 59 40.7
CAN.G141.4 Capsicum annuum HOM05D000082 ORTHO05D001639 7.2e-06 57.0 58 34.5
COL.COLO4_10976 Corchorus olitorius HOM05D000082 ORTHO05D008126 7.2e-06 57.0 75 36.0
Dinv03794 Davidia involucrata HOM05D000082 ORTHO05D000038 7.2e-06 57.0 54 38.9
FvH4_1g03410 Fragaria vesca HOM05D012452 ORTHO05D017950 7.2e-06 57.0 56 39.3
FAN19G1771 Fragaria x ananassa HOM05D012452 ORTHO05D017950 7.2e-06 57.0 56 39.3
Potri.001G400600 Populus trichocarpa HOM05D004354 ORTHO05D001065 7.2e-06 57.0 62 37.1
VMungo1215G2860 Vigna mungo HOM05D000459 ORTHO05D000038 7.2e-06 57.0 54 38.9
Gohir.A09G015100 Gossypium hirsutum HOM05D000082 ORTHO05D000038 9.4e-06 56.6 50 40.0
Gohir.D09G014000 Gossypium hirsutum HOM05D000082 ORTHO05D000038 9.4e-06 56.6 51 39.2
Thecc.04G083500 Theobroma cacao HOM05D000082 ORTHO05D000038 9.4e-06 56.6 50 42.0


User provided reference genes

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