Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62033734 Chenopodium quinoa HOM05D004354 ORTHO05D005409 8.3e-224 780.0 387 100.0
Hund01030 Selenicereus undatus HOM05D004354 ORTHO05D005409 2.1e-150 536.2 373 73.7
Dinv04814 Davidia involucrata HOM05D004354 ORTHO05D005409 4.0e-149 531.9 350 72.9
Actinidia11016 Actinidia chinensis HOM05D004354 ORTHO05D005409 2.2e-147 526.2 355 72.4
Sc21g0003070 Simmondsia chinensis HOM05D004354 ORTHO05D005409 2.2e-147 526.2 367 71.4
EL10Ac9g20792 Beta vulgaris HOM05D004354 ORTHO05D005409 4.8e-147 525.0 311 84.6
Rhsim06G0139400 Rhododendron simsii HOM05D004354 ORTHO05D005409 5.3e-146 521.5 349 73.6
Dinv13394 Davidia involucrata HOM05D004354 ORTHO05D005409 7.7e-145 517.7 349 71.9
Manes.13G144800 Manihot esculenta HOM05D004354 ORTHO05D005409 7.7e-145 517.7 367 69.8
Cfa014637 Carpinus fangiana HOM05D004354 ORTHO05D005409 1.3e-144 516.9 356 71.9
CSS0014582 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 3.8e-144 515.4 350 70.6
Gohir.A03G155600 Gossypium hirsutum HOM05D004354 ORTHO05D005409 5.0e-144 515.0 359 71.3
CSS0000262 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 6.5e-144 514.6 350 70.6
Thecc.02G182400 Theobroma cacao HOM05D004354 ORTHO05D005409 1.9e-143 513.1 359 70.8
Gorai.005G200400 Gossypium raimondii HOM05D004354 ORTHO05D005409 3.2e-143 512.3 359 71.0
Gohir.D02G178700 Gossypium hirsutum HOM05D004354 ORTHO05D005409 4.2e-143 511.9 359 71.0
GSVIVG01020571001 Vitis vinifera HOM05D004354 ORTHO05D005409 2.1e-142 509.6 362 69.3
COL.COLO4_05947 Corchorus olitorius HOM05D004354 ORTHO05D005409 2.7e-142 509.2 359 70.2
Cc05_g07440 Coffea canephora HOM05D004354 ORTHO05D005409 3.6e-142 508.8 352 69.3
QL08p039658 Quercus lobata HOM05D004354 ORTHO05D005409 4.7e-142 508.4 368 69.0
Prupe.3G139300 Prunus persica HOM05D004354 ORTHO05D005409 8.0e-142 507.7 369 68.6
CiPaw.03G179000 Carya illinoinensis HOM05D004354 ORTHO05D005409 3.4e-140 502.3 348 70.7
THA.LOC104804057 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 1.7e-139 500.0 352 69.0
Ciclev10014745m.g Citrus clementina HOM05D004354 ORTHO05D005409 4.1e-138 495.4 354 69.5
Hma1.2p1_0002F.1_g002080 Hydrangea macrophylla HOM05D004354 ORTHO05D005409 5.4e-138 495.0 349 69.3
Lsat_1_v5_gn_4_66820 Lactuca sativa HOM05D004354 ORTHO05D005409 3.5e-137 492.3 344 69.5
TWI23G0225 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 5.9e-137 491.5 359 68.2
Potri.007G139300 Populus trichocarpa HOM05D004354 ORTHO05D005409 3.8e-136 488.8 355 68.5
Oeu036067.1 Olea europaea HOM05D004354 ORTHO05D005409 8.6e-136 487.6 353 67.1
MSTRG.6802 Avicennia marina HOM05D004354 ORTHO05D005409 1.9e-135 486.5 357 66.9
FAN05G5576 Fragaria x ananassa HOM05D004354 ORTHO05D005409 4.2e-135 485.3 329 70.5
PGR142G0821 Punica granatum HOM05D004354 ORTHO05D005409 4.2e-135 485.3 356 69.4
Potri.017G012600 Populus trichocarpa HOM05D004354 ORTHO05D005409 9.5e-135 484.2 356 67.1
RcHm_v2.0_Chr2g0127681 Rosa chinensis HOM05D004354 ORTHO05D005409 2.8e-134 482.6 355 66.8
TAR627G0070 Trochodendron aralioides HOM05D004354 ORTHO05D005409 4.7e-134 481.9 349 66.5
FvH4_6g26490 Fragaria vesca HOM05D004354 ORTHO05D005409 8.0e-134 481.1 326 70.6
Actinidia11091 Actinidia chinensis HOM05D004354 ORTHO05D005409 1.4e-133 480.3 318 73.6
FAN02G3736 Fragaria x ananassa HOM05D004354 ORTHO05D005409 1.4e-133 480.3 356 65.4
Phvul.005G102100 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 1.8e-133 479.9 354 66.9
Sopen12g001470 Solanum pennellii HOM05D004354 ORTHO05D005409 3.0e-133 479.2 359 66.9
Nn1g06483 Nelumbo nucifera HOM05D004354 ORTHO05D005409 5.2e-133 478.4 338 68.0
CANSAT64G2319 Cannabis sativa HOM05D004354 ORTHO05D005409 6.8e-133 478.0 355 67.3
Solyc12g005470.2 Solanum lycopersicum HOM05D004354 ORTHO05D005409 6.8e-133 478.0 359 66.6
TAR626G1453 Trochodendron aralioides HOM05D004354 ORTHO05D005409 6.8e-133 478.0 343 69.4
VMungo1080G0203 Vigna mungo HOM05D004354 ORTHO05D005409 6.8e-133 478.0 352 67.3
arahy.Tifrunner.gnm1.ann1.SG72Z3 Arachis hypogaea HOM05D004354 ORTHO05D005409 8.9e-133 477.6 354 65.5
MD17G1236500 Malus domestica HOM05D004354 ORTHO05D005409 8.9e-133 477.6 342 69.0
DCAR_009753 Daucus carota HOM05D004354 ORTHO05D005409 1.2e-132 477.2 348 68.7
MELO3C013588.2 Cucumis melo HOM05D004354 ORTHO05D005409 1.5e-132 476.9 349 67.6
MD09G1244500 Malus domestica HOM05D004354 ORTHO05D005409 1.5e-132 476.9 343 68.2
Solyc07g053850.3 Solanum lycopersicum HOM05D004354 ORTHO05D005409 1.5e-132 476.9 347 68.3
FAN14G3021 Fragaria x ananassa HOM05D004354 ORTHO05D005409 3.4e-132 475.7 339 68.1
arahy.Tifrunner.gnm1.ann1.6AZK3P Arachis hypogaea HOM05D004354 ORTHO05D005409 4.4e-132 475.3 336 70.2
arahy.Tifrunner.gnm1.ann1.7S1AZB Arachis hypogaea HOM05D004354 ORTHO05D005409 4.4e-132 475.3 336 70.2
Sopen07g027820 Solanum pennellii HOM05D004354 ORTHO05D005409 4.4e-132 475.3 347 68.3
SGA_v2.0_scaffold70G23519 Striga asiatica HOM05D004354 ORTHO05D005409 4.4e-132 475.3 353 65.7
CsaV3_6G015220 Cucumis sativus L. HOM05D004354 ORTHO05D005409 5.7e-132 474.9 349 67.6
Sed0026522 Sechium edule HOM05D004354 ORTHO05D005409 7.5e-132 474.6 360 66.7
AL3G53730 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 9.8e-132 474.2 350 66.3
vmacro12326 Vaccinium macrocarpon HOM05D004354 ORTHO05D005409 2.8e-131 472.6 313 73.2
Glyma.12G205300 Glycine max HOM05D004354 ORTHO05D005409 4.9e-131 471.9 353 65.4
PGSC0003DMG400032816 Solanum tuberosum HOM05D004354 ORTHO05D005409 8.3e-131 471.1 348 67.8
Glyma.13G295600 Glycine max HOM05D004354 ORTHO05D005409 1.4e-130 470.3 353 66.3
Lj3g0011593 Lotus japonicus HOM05D004354 ORTHO05D005409 3.1e-130 469.2 336 69.6
HanXRQChr05g0143301 Helianthus annuus HOM05D004354 ORTHO05D005409 9.2e-130 467.6 337 67.1
arahy.Tifrunner.gnm1.ann1.5TEV2E Arachis hypogaea HOM05D004354 ORTHO05D005409 1.6e-129 466.8 370 62.4
Lj1A714G27 Lonicera japonica HOM05D004354 ORTHO05D005409 1.6e-129 466.8 349 65.9
Lalb_Chr19g0135191 Lupinus albus HOM05D004354 ORTHO05D005409 2.0e-129 466.5 351 64.4
Eucgr.K01043 Eucalyptus grandis HOM05D004354 ORTHO05D005409 5.9e-129 464.9 357 65.0
Thhalv10002192m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 7.8e-129 464.5 343 65.6
Sp3g33900 Schrenkiella parvula HOM05D004354 ORTHO05D005409 1.0e-128 464.2 347 65.1
FAN09G2589 Fragaria x ananassa HOM05D004354 ORTHO05D005409 6.6e-128 461.5 348 66.1
PSO675G5152 Papaver somniferum HOM05D004354 ORTHO05D005409 6.6e-128 461.5 346 64.2
PSO541G1897 Papaver somniferum HOM05D004354 ORTHO05D005409 8.6e-128 461.1 346 64.2
Glyma.06G290800 Glycine max HOM05D004354 ORTHO05D005409 1.1e-127 460.7 368 61.1
Aqoxy1G02375 Aquilegia oxysepala HOM05D004354 ORTHO05D005409 1.5e-127 460.3 339 67.3
Carub.0007s1237 Capsella rubella HOM05D004354 ORTHO05D005409 5.6e-127 458.4 358 63.1
AT2G20650 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 7.3e-127 458.0 350 64.0
Phvul.011G119730 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 1.6e-126 456.8 368 60.6
Aa31LG8G17560 Aethionema arabicum HOM05D004354 ORTHO05D005409 4.7e-126 455.3 351 63.5
Migut.M00279 Erythranthe guttata HOM05D004354 ORTHO05D005409 6.1e-126 454.9 342 62.6
TWI59G0686 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 6.1e-126 454.9 359 63.8
Medtr4g078525 Medicago truncatula HOM05D004354 ORTHO05D005409 8.0e-126 454.5 371 60.1
Glyma.12G116100 Glycine max HOM05D004354 ORTHO05D005409 1.4e-125 453.8 368 60.9
CARHR236110 Cardamine hirsuta HOM05D004354 ORTHO05D005409 2.3e-125 453.0 353 62.6
Lj3g0017215 Lotus japonicus HOM05D004354 ORTHO05D005409 5.2e-125 451.8 371 60.6
Ca_18937_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 8.9e-125 451.1 347 62.8
Carub.0003s3517 Capsella rubella HOM05D004354 ORTHO05D005409 2.0e-124 449.9 351 63.5
ECA234G2175 Erigeron canadensis HOM05D004354 ORTHO05D005409 2.6e-124 449.5 329 65.7
Thhalv10024798m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 2.6e-124 449.5 359 61.3
AT4G28370 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 3.4e-124 449.1 349 63.6
Nitab4.5_0001184g0100 Nicotiana tabacum HOM05D004354 ORTHO05D005409 3.4e-124 449.1 347 65.1
AL7G24220 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 1.3e-123 447.2 348 63.2
BraA07t27805Z Brassica rapa HOM05D004354 ORTHO05D005409 1.3e-123 447.2 350 64.9
BcaB03g16858 Brassica carinata HOM05D004354 ORTHO05D005409 1.7e-123 446.8 351 63.8
THA.LOC104824696 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 4.9e-123 445.3 349 63.6
Ca_09445_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 6.4e-123 444.9 351 63.5
BcaC06g36756 Brassica carinata HOM05D004354 ORTHO05D005409 1.9e-122 443.4 350 64.3
C07p00280 Brassica napus HOM05D004354 ORTHO05D005409 1.9e-122 443.4 350 64.6
BolC7t40478H Brassica oleracea HOM05D004354 ORTHO05D005409 1.9e-122 443.4 350 64.3
Psat7g168720 Pisum sativum HOM05D004354 ORTHO05D005409 2.4e-122 443.0 344 63.1
BraA08t33968Z Brassica rapa HOM05D004354 ORTHO05D005409 3.5e-121 439.1 360 62.2
Aa31LG2G22230 Aethionema arabicum HOM05D004354 ORTHO05D005409 4.6e-121 438.7 348 62.4
MBI18_g19626_MAGBIO Magnolia biondii HOM05D004354 ORTHO05D005409 6.0e-121 438.3 343 64.7
BcaC07g38328 Brassica carinata HOM05D004354 ORTHO05D005409 7.8e-121 438.0 360 62.2
A08p20090 Brassica napus HOM05D004354 ORTHO05D005409 7.8e-121 438.0 360 62.2
C08p10830 Brassica napus HOM05D004354 ORTHO05D005409 7.8e-121 438.0 360 62.2
BolC8t48758H Brassica oleracea HOM05D004354 ORTHO05D005409 7.8e-121 438.0 360 62.2
TPR.G2846 Trifolium pratense HOM05D004354 ORTHO05D005409 1.0e-120 437.6 359 60.4
Lalb_Chr03g0029541 Lupinus albus HOM05D004354 ORTHO05D005409 3.9e-120 435.6 351 61.0
Cpa.g.sc83.63 Carica papaya HOM05D004354 ORTHO05D005409 1.9e-119 433.3 367 62.4
BcaB03g12570 Brassica carinata HOM05D004354 ORTHO05D005409 5.6e-119 431.8 360 61.1
Peaxi162Scf01415g00030 Petunia axillaris HOM05D004354 ORTHO05D005409 6.2e-118 428.3 373 59.2
Lalb_Chr01g0005151 Lupinus albus HOM05D004354 ORTHO05D005409 2.3e-117 426.4 343 60.6
Haze_13201 Corylus avellana HOM05D004354 ORTHO05D005409 1.5e-116 423.7 373 60.3
Nitab4.5_0001752g0070 Nicotiana tabacum HOM05D004354 ORTHO05D005409 1.5e-116 423.7 343 62.4
Nitab4.5_0000638g0120 Nicotiana tabacum HOM05D004354 ORTHO05D005409 1.7e-115 420.2 343 61.8
PGSC0003DMG400013734 Solanum tuberosum HOM05D004354 ORTHO05D005409 3.7e-115 419.1 364 59.1
ClCG02G017760 Citrullus lanatus HOM05D004354 ORTHO05D005409 2.4e-114 416.4 369 58.8
A07p00120 Brassica napus HOM05D004354 ORTHO05D005409 1.6e-113 413.7 338 62.1
CARHR111300 Cardamine hirsuta HOM05D004354 ORTHO05D005409 2.7e-113 412.9 312 65.4
Peaxi162Scf00008g00611 Petunia axillaris HOM05D004354 ORTHO05D005409 3.3e-111 406.0 359 58.8
HPP92_012418 Vanilla planifolia HOM05D004354 ORTHO05D005409 6.2e-110 401.7 362 57.2
AUR62038895 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.3e-104 384.0 232 84.1
Sed0007610 Sechium edule HOM05D004354 ORTHO05D005409 1.3e-104 384.0 289 66.4
ATR0763G074 Amborella trichopoda HOM05D004354 ORTHO05D005409 1.5e-103 380.6 311 60.5
Sp7g26330 Schrenkiella parvula HOM05D004354 ORTHO05D005409 2.9e-99 366.3 349 55.6
unitig_22.g5828 Utricularia gibba HOM05D004354 ORTHO05D005409 7.6e-92 341.7 346 51.4
Os07g0501900 Oryza sativa ssp. japonica HOM05D004354 ORTHO05D005409 4.2e-90 335.9 324 55.2
SGA_v2.0_scaffold34G13945 Striga asiatica HOM05D004354 ORTHO05D005409 9.3e-90 334.7 324 52.5
Nitab4.5_0006194g0010 Nicotiana tabacum HOM05D004354 ORTHO05D005409 2.5e-87 326.6 347 50.7
Pp3c18_8870 Physcomitrium patens HOM05D004354 ORTHO05D005409 1.1e-82 311.2 354 48.9
Pp3c21_16510 Physcomitrium patens HOM05D004354 ORTHO05D005409 4.6e-81 305.8 355 50.4
CDE05G0163 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 1.7e-75 287.3 202 70.8
Mapoly0093s0076 Marchantia polymorpha HOM05D004354 ORTHO05D005409 1.9e-74 283.9 353 45.9
SMO351G0175 Selaginella moellendorffii HOM05D004354 ORTHO05D005409 1.6e-73 280.8 367 44.1
Zm00001eb322160 Zea mays HOM05D004354 ORTHO05D005409 3.9e-72 276.2 177 78.0
AUR62038894 Chenopodium quinoa HOM05D004354 ORTHO05D005409 7.4e-63 245.4 163 75.5
Atru.chr6.2897 Acer truncatum HOM05D004354 ORTHO05D005409 1.7e-54 217.6 125 86.4
Atru.chr6.2898 Acer truncatum HOM05D004354 ORTHO05D005409 1.8e-40 171.0 162 51.9
CDE05G2312 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 3.7e-30 136.7 161 46.0
LjContig00564g0000671 Lotus japonicus HOM05D000084 ORTHO05D000363 4.1e-29 133.3 114 56.1
CBR_g36920 Chara braunii HOM05D004354 ORTHO05D005409 1.0e-27 128.6 131 55.0
SEGI_31944 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 1.2e-25 121.7 139 44.6
arahy.Tifrunner.gnm1.ann1.56HDLZ Arachis hypogaea HOM05D004354 ORTHO05D005409 1.8e-24 117.9 133 46.6
TPR.G10974 Trifolium pratense HOM05D004354 ORTHO05D005409 6.3e-22 109.4 200 36.5
SGA_v2.0_scaffold70G23386 Striga asiatica HOM05D004354 ORTHO05D005409 3.1e-21 107.1 114 56.1
Nn1g04142 Nelumbo nucifera HOM05D004354 ORTHO05D005409 6.1e-17 92.8 56 75.0
Cre08.g381900 Chlamydomonas reinhardtii HOM05D004354 ORTHO05D005409 5.0e-11 73.2 120 39.2
CDE05G0895 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 6.6e-11 72.8 39 89.7
Glyma.14G107350 Glycine max HOM05D004354 ORTHO05D005409 8.6e-11 72.4 51 62.7
Ciclev10013591m.g Citrus clementina HOM05D004354 ORTHO05D005409 1.2e-09 68.6 44 70.5
PRCOL_00005121 Prasinoderma coloniale HOM05D000722 ORTHO05D000590 2.1e-09 67.8 75 42.7
SGA_v2.0_scaffold4316G54468 Striga asiatica HOM05D004354 ORTHO05D005409 4.9e-06 56.6 31 87.1


User provided reference genes

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