Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62031870 Chenopodium quinoa HOM05D001353 ORTHO05D005187 0.0e+00 1109.0 609 100.0
AUR62022162 Chenopodium quinoa HOM05D001353 ORTHO05D005187 1.3e-170 604.0 449 74.8
EL10Ac9g22047 Beta vulgaris HOM05D001353 ORTHO05D005187 5.1e-143 512.3 510 59.4
QL05p021219 Quercus lobata HOM05D001353 ORTHO05D005187 2.5e-113 413.7 457 53.0
Sabra01G0153700 Salix brachista HOM05D001353 ORTHO05D005187 2.1e-112 410.6 365 60.8
MELO3C024262.2 Cucumis melo HOM05D001353 ORTHO05D005187 4.7e-112 409.5 368 59.2
Prupe.3G063900 Prunus persica HOM05D001353 ORTHO05D005187 4.7e-112 409.5 453 53.6
Ca_01153_v3 Cicer arietinum L. HOM05D001353 ORTHO05D005187 2.3e-111 407.1 439 54.4
Potri.001G186600 Populus trichocarpa HOM05D001353 ORTHO05D005187 2.3e-111 407.1 365 61.4
VMungo1080G1628 Vigna mungo HOM05D001353 ORTHO05D005187 3.0e-111 406.8 448 53.8
CsaV3_7G033510 Cucumis sativus L. HOM05D001353 ORTHO05D005187 3.9e-111 406.4 368 58.7
Hund00659 Selenicereus undatus HOM05D001353 ORTHO05D005187 3.9e-111 406.4 378 61.1
Eucgr.F03052 Eucalyptus grandis HOM05D001353 ORTHO05D005187 5.2e-111 406.0 444 54.3
CSS0044224 Camellia sinensis var. sinensis HOM05D001353 ORTHO05D005187 6.7e-111 405.6 381 60.4
Lalb_Chr24g0396041 Lupinus albus HOM05D001353 ORTHO05D005187 6.7e-111 405.6 458 51.7
Thecc.06G095300 Theobroma cacao HOM05D001353 ORTHO05D005187 4.4e-110 402.9 438 53.0
Medtr2g101350 Medicago truncatula HOM05D001353 ORTHO05D005187 7.4e-110 402.1 372 61.3
CiPaw.01G234100 Carya illinoinensis HOM05D001353 ORTHO05D005187 2.2e-109 400.6 365 60.5
Haze_16338 Corylus avellana HOM05D001353 ORTHO05D005187 2.2e-109 400.6 371 60.6
Lj3g0013233 Lotus japonicus HOM05D001353 ORTHO05D005187 1.1e-108 398.3 445 53.5
Phvul.005G170400 Phaseolus vulgaris HOM05D001353 ORTHO05D005187 1.1e-108 398.3 443 53.0
TPR.G37234 Trifolium pratense HOM05D001353 ORTHO05D005187 1.1e-108 398.3 436 54.4
PGR102G2383 Punica granatum HOM05D001353 ORTHO05D005187 1.4e-108 397.9 371 61.2
CANSAT56G0514 Cannabis sativa HOM05D001353 ORTHO05D005187 1.8e-108 397.5 458 51.3
THA.LOC104817973 Tarenaya hassleriana HOM05D001353 ORTHO05D005187 7.0e-108 395.6 446 52.0
MD17G1188900 Malus domestica HOM05D001353 ORTHO05D005187 1.2e-107 394.8 453 51.7
Glyma.15G018200 Glycine max HOM05D001353 ORTHO05D005187 1.6e-107 394.4 377 59.4
Actinidia32713 Actinidia chinensis HOM05D001353 ORTHO05D005187 2.6e-107 393.7 376 58.2
Sed0007714 Sechium edule HOM05D001353 ORTHO05D005187 2.6e-107 393.7 373 56.0
Ciclev10025383m.g Citrus clementina HOM05D001353 ORTHO05D005187 5.9e-107 392.5 455 51.0
Cfa002108 Carpinus fangiana HOM05D001353 ORTHO05D005187 7.7e-107 392.1 455 51.9
FvH4_6g31960 Fragaria vesca HOM05D001353 ORTHO05D005187 1.1e-105 388.3 366 60.4
Duzib160G0428 Durio zibethinus HOM05D001353 ORTHO05D005187 2.5e-105 387.1 442 51.8
Gohir.D03G060300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 3.6e-104 383.3 443 51.0
GSVIVG01017044001 Vitis vinifera HOM05D001353 ORTHO05D005187 1.4e-103 381.3 364 58.8
Carub.0003s1598 Capsella rubella HOM05D001353 ORTHO05D005187 3.0e-103 380.2 432 51.6
Gorai.003G064100 Gossypium raimondii HOM05D001353 ORTHO05D005187 3.0e-103 380.2 443 50.8
Nn2g11646 Nelumbo nucifera HOM05D001353 ORTHO05D005187 5.2e-103 379.4 379 57.0
Aa31LG8G3360 Aethionema arabicum HOM05D001353 ORTHO05D005187 8.8e-103 378.6 434 52.1
RcHm_v2.0_Chr2g0139461 Rosa chinensis HOM05D001353 ORTHO05D005187 1.2e-102 378.3 361 58.7
QL05p021238 Quercus lobata HOM05D001353 ORTHO05D005187 1.5e-102 377.9 339 62.2
arahy.Tifrunner.gnm1.ann1.8T8ZNV Arachis hypogaea HOM05D001353 ORTHO05D005187 2.6e-102 377.1 364 58.8
PSO782G2586 Papaver somniferum HOM05D001353 ORTHO05D005187 2.2e-101 374.0 367 58.3
Sp3g14600 Schrenkiella parvula HOM05D001353 ORTHO05D005187 2.8e-101 373.6 433 51.0
Thhalv10020736m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 3.7e-101 373.2 434 50.9
Migut.I00929 Erythranthe guttata HOM05D001353 ORTHO05D005187 4.8e-101 372.9 385 54.5
arahy.Tifrunner.gnm1.ann1.K0TTLC Arachis hypogaea HOM05D001353 ORTHO05D005187 8.2e-101 372.1 365 57.8
FAN02G4091 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.1e-100 371.7 450 51.6
Nitab4.5_0006985g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.8e-100 370.9 371 54.4
Solyc03g120480.3 Solanum lycopersicum HOM05D001353 ORTHO05D005187 3.5e-99 366.7 459 47.5
PSO566G0332 Papaver somniferum HOM05D001353 ORTHO05D005187 7.7e-99 365.5 361 57.3
Sopen03g039360 Solanum pennellii HOM05D001353 ORTHO05D005187 1.0e-98 365.2 459 46.8
Rhsim12G0201500 Rhododendron simsii HOM05D001353 ORTHO05D000070 1.3e-98 364.8 524 45.4
AL3G28930 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 1.7e-98 364.4 432 50.0
Dinv30464 Davidia involucrata HOM05D001353 ORTHO05D005187 1.7e-98 364.4 425 51.5
Peaxi162Scf00015g00128 Petunia axillaris HOM05D001353 ORTHO05D005187 1.7e-98 364.4 463 46.7
CAN.G438.39 Capsicum annuum HOM05D001353 ORTHO05D005187 2.9e-98 363.6 377 53.6
Aqoxy7G01510 Aquilegia oxysepala HOM05D001353 ORTHO05D005187 9.4e-97 358.6 365 53.7
TAR383G0250 Trochodendron aralioides HOM05D001353 ORTHO05D005187 1.2e-96 358.2 369 53.9
Cc04_g02860 Coffea canephora HOM05D001353 ORTHO05D005187 1.6e-96 357.8 364 54.9
MSTRG.11044 Avicennia marina HOM05D001353 ORTHO05D005187 6.1e-96 355.9 406 50.2
Lsat_1_v5_gn_1_34781 Lactuca sativa HOM05D001353 ORTHO05D005187 6.1e-96 355.9 441 47.8
Manes.11G036600 Manihot esculenta HOM05D001353 ORTHO05D005187 1.0e-95 355.1 329 59.3
SalBow2G1883 Salvia bowleyana HOM05D001353 ORTHO05D005187 1.0e-95 355.1 398 53.0
Gohir.D09G081500 Gossypium hirsutum HOM05D001353 ORTHO05D005187 5.2e-95 352.8 368 52.2
Gohir.A09G081400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 8.8e-95 352.1 435 47.6
Gorai.006G097100 Gossypium raimondii HOM05D001353 ORTHO05D005187 8.8e-95 352.1 365 52.9
CARHR091420 Cardamine hirsuta HOM05D001353 ORTHO05D005187 3.4e-94 350.1 343 56.0
ECA247G1811 Erigeron canadensis HOM05D001353 ORTHO05D005187 1.3e-93 348.2 372 52.2
DCAR_007575 Daucus carota HOM05D001353 ORTHO05D005187 2.8e-93 347.1 451 46.3
BraA03t13123Z Brassica rapa HOM05D001353 ORTHO05D005187 1.1e-92 345.1 428 48.4
Hma1.2p1_0659F.1_g197330 Hydrangea macrophylla HOM05D001353 ORTHO05D005187 1.8e-92 344.4 447 45.2
A03p39730 Brassica napus HOM05D001353 ORTHO05D005187 3.1e-92 343.6 428 47.9
MBI01_g06185_MAGBIO Magnolia biondii HOM05D001353 ORTHO05D002359 1.0e-90 338.6 347 57.1
vmacro16977 Vaccinium macrocarpon HOM05D001353 ORTHO05D005187 1.0e-90 338.6 388 50.8
ClCG09G001840 Citrullus lanatus HOM05D001353 ORTHO05D005187 1.3e-90 338.2 369 51.5
SGA_v2.0_scaffold5G02539 Striga asiatica HOM05D001353 ORTHO05D005187 1.3e-90 338.2 421 48.9
BcaC01g03834 Brassica carinata HOM05D001353 ORTHO05D005187 2.3e-90 337.4 427 46.8
ATR0315G016 Amborella trichopoda HOM05D001353 ORTHO05D005187 8.6e-90 335.5 360 53.3
HanXRQChr04g0096261 Helianthus annuus HOM05D001353 ORTHO05D005187 4.7e-88 329.7 377 48.3
Os01g0231900 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 4.0e-87 326.6 358 49.4
PGSC0003DMG401002551 Solanum tuberosum HOM05D001353 ORTHO05D005187 6.8e-87 325.9 379 49.6
CDE05G3629 Ceratophyllum demersum HOM05D001353 ORTHO05D005187 4.4e-86 323.2 360 50.6
HPP92_005271 Vanilla planifolia HOM05D001353 ORTHO05D005187 1.8e-84 317.8 354 50.3
BcaB04g18890 Brassica carinata HOM05D001353 ORTHO05D005187 3.1e-84 317.0 402 49.3
C03p48170 Brassica napus HOM05D001353 ORTHO05D005187 1.3e-82 311.6 477 43.6
TWI12G1071 Tripterygium wilfordii HOM05D001353 ORTHO05D005187 2.3e-82 310.8 465 44.1
Lj9A510G79 Lonicera japonica HOM05D001353 ORTHO05D005187 9.5e-81 305.4 350 52.3
Nitab4.5_0011578g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 7.5e-78 295.8 424 43.6
Gohir.A02G119300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 4.0e-71 273.5 223 64.1
Cpa.g.sc109.36 Carica papaya HOM05D001353 ORTHO05D005187 5.8e-70 269.6 193 69.9
Nitab4.5_0000568g0110 Nicotiana tabacum HOM05D001353 ORTHO05D005187 2.4e-68 264.2 294 49.7
Psat1g005440 Pisum sativum HOM05D001353 ORTHO05D005187 3.2e-68 263.8 351 47.9
BolC3t17020H Brassica oleracea HOM05D001353 ORTHO05D005187 2.7e-67 260.8 410 40.2
Actinidia21695 Actinidia chinensis HOM05D001353 ORTHO05D005187 3.5e-67 260.4 307 50.5
HanXRQChr04g0096271 Helianthus annuus HOM05D001353 ORTHO05D005187 9.5e-65 252.3 351 43.6
AT3G16230 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 2.1e-64 251.1 351 44.7
AagrBONN_evm.TU.Sc2ySwM_368.659 Anthoceros agrestis HOM05D001353 ORTHO05D005187 2.8e-64 250.8 359 42.1
ATR0315G123 Amborella trichopoda HOM05D001353 ORTHO05D005187 4.7e-64 250.0 308 48.7
Zm00001eb119210 Zea mays HOM05D001353 ORTHO05D005187 4.4e-62 243.4 288 47.9
Nitab4.5_0001591g0200 Nicotiana tabacum HOM05D001353 ORTHO05D005187 2.8e-56 224.2 289 46.0
Mapoly0110s0022 Marchantia polymorpha HOM05D001353 ORTHO05D005187 4.7e-56 223.4 442 34.4
Sc10g0007280 Simmondsia chinensis HOM05D001353 ORTHO05D005187 4.7e-56 223.4 239 54.8
Carub.0003s1597 Capsella rubella HOM05D001353 ORTHO05D005187 1.8e-55 221.5 279 44.4
COL.COLO4_30466 Corchorus olitorius HOM05D001353 ORTHO05D005187 1.5e-54 218.4 188 60.1
FAN05G1388 Fragaria x ananassa HOM05D001353 ORTHO05D005187 5.8e-54 216.5 237 54.9
FAN14G4842 Fragaria x ananassa HOM05D001353 ORTHO05D005187 2.2e-53 214.5 237 54.0
SMO340G0259 Selaginella moellendorffii HOM05D001353 ORTHO05D005187 2.9e-53 214.2 279 42.3
CARHR091410 Cardamine hirsuta HOM05D001353 ORTHO05D005187 3.8e-53 213.8 278 43.2
AL3G28920 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 4.9e-53 213.4 279 42.3
CAN.G206.170 Capsicum annuum HOM05D001353 ORTHO05D005187 2.4e-52 211.1 187 57.2
BcaC09g48591 Brassica carinata HOM05D001353 ORTHO05D005187 7.1e-52 209.5 322 40.4
BcaC01g03832 Brassica carinata HOM05D001353 ORTHO05D005187 1.2e-48 198.7 151 66.9
Atru.chr1.3463 Acer truncatum HOM05D001353 ORTHO05D005187 4.7e-48 196.8 159 62.3
BraA01t03849Z Brassica rapa HOM05D001353 ORTHO05D005187 1.1e-47 195.7 291 39.5
A01p37890 Brassica napus HOM05D001353 ORTHO05D005187 3.1e-47 194.1 291 39.5
C01p48010 Brassica napus HOM05D001353 ORTHO05D005187 4.0e-47 193.7 290 39.3
Nitab4.5_0021337g0010 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.2e-46 192.2 270 44.4
Thhalv10021339m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 2.9e-45 187.6 187 52.9
Solyc02g088200.4 Solanum lycopersicum HOM05D001353 ORTHO05D005187 3.8e-45 187.2 180 54.4
Sopen02g032890 Solanum pennellii HOM05D001353 ORTHO05D005187 4.9e-45 186.8 170 55.9
PGSC0003DMG400001428 Solanum tuberosum HOM05D001353 ORTHO05D005187 4.9e-45 186.8 171 55.6
BcaC09g48592 Brassica carinata HOM05D001353 ORTHO05D005187 1.1e-44 185.7 279 38.7
Os01g0231800 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 1.9e-44 184.9 298 37.6
SHI11057 Sapria himalayana HOM05D001353 ORTHO05D005187 3.3e-41 174.1 168 56.5
CBR_g20332 Chara braunii HOM05D001353 ORTHO05D005187 4.8e-40 170.2 176 51.7
Sp3g14590 Schrenkiella parvula HOM05D001353 ORTHO05D005187 7.6e-38 162.9 186 46.8
COL.COLO4_30465 Corchorus olitorius HOM05D000453 ORTHO05D000387 8.4e-37 159.5 233 45.5
unitig_22.g6212 Utricularia gibba HOM05D001353 ORTHO05D005187 1.4e-36 158.7 124 61.3
Glyma.13G355900 Glycine max HOM05D001353 ORTHO05D005187 7.1e-36 156.4 197 51.3
BcaC01g03835 Brassica carinata HOM05D001353 ORTHO05D005187 1.7e-29 135.2 307 31.3
CANSAT56G3175 Cannabis sativa HOM05D001353 ORTHO05D005187 7.1e-28 129.8 148 51.4
Nitab4.5_0000568g0120 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.0e-26 125.9 118 56.8
AUR62017399 Chenopodium quinoa HOM05D007105 ORTHO05D009304 6.7e-26 123.2 88 79.5
Pp3c16_10470 Physcomitrium patens HOM05D001353 ORTHO05D005187 1.5e-25 122.1 246 31.7
AT3G16220 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 2.5e-25 121.3 192 38.5
Atru.chr1.3457 Acer truncatum HOM05D001353 ORTHO05D005187 4.8e-24 117.1 99 64.6
Cre01.g008000 Chlamydomonas reinhardtii HOM05D001353 ORTHO05D005187 1.2e-22 112.5 204 31.9
Gohir.A02G119400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.0e-21 109.4 170 40.0
BcaC09g48593 Brassica carinata HOM05D001353 ORTHO05D005187 3.9e-18 97.4 93 50.5
C03p48160 Brassica napus HOM05D001353 ORTHO05D005187 5.1e-18 97.1 215 30.2
BolC3t17094H Brassica oleracea HOM05D001353 ORTHO05D005187 1.5e-17 95.5 210 30.0
Nitab4.5_0000568g0100 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.6e-16 92.0 166 36.7
SEGI_15304 Sequoiadendron giganteum HOM05D001353 ORTHO05D005187 4.8e-16 90.5 119 42.0
Medtr8g033020 Medicago truncatula HOM05D001353 ORTHO05D005187 6.5e-13 80.1 73 53.4
MCO06G129 Micromonas commoda HOM05D001353 ORTHO05D005187 8.5e-13 79.7 201 29.9
ATR0315G092 Amborella trichopoda HOM05D001353 ORTHO05D005187 1.1e-12 79.3 66 60.6
BolC3t17095H Brassica oleracea HOM05D001353 ORTHO05D000017 2.3e-10 71.6 292 26.7
FvH4_4g23310 Fragaria vesca HOM05D001353 ORTHO05D005187 1.2e-06 59.3 129 34.1
FAN12G2992 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.2e-06 59.3 153 32.7
AUR62025276 Chenopodium quinoa HOM05D006185 ORTHO05D007572 2.0e-06 58.5 33 87.9
Psat1g156000 Pisum sativum HOM05D001353 ORTHO05D005187 2.6e-06 58.2 40 72.5


User provided reference genes

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