Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62030669 Chenopodium quinoa HOM05D005914 ORTHO05D007361 5.4e-231 803.9 388 100.0
AUR62024878 Chenopodium quinoa HOM05D005914 ORTHO05D007361 3.6e-142 508.8 325 80.0
EL10Ac2g02591 Beta vulgaris HOM05D005914 ORTHO05D007361 5.0e-136 488.4 324 75.3
QL02p022744 Quercus lobata HOM05D005914 ORTHO05D007361 1.6e-110 403.7 321 63.6
CiPaw.07G220900 Carya illinoinensis HOM05D005914 ORTHO05D007361 2.7e-105 386.3 313 64.2
Haze_21570 Corylus avellana HOM05D005914 ORTHO05D007361 4.6e-105 385.6 317 62.5
Cfa013180 Carpinus fangiana HOM05D005914 ORTHO05D007361 1.3e-102 377.5 314 61.8
Thecc.09G149100 Theobroma cacao HOM05D005914 ORTHO05D007361 1.5e-100 370.5 313 59.4
Gorai.004G274400 Gossypium raimondii HOM05D005914 ORTHO05D007361 2.6e-100 369.8 312 60.3
MD15G1120500 Malus domestica HOM05D005914 ORTHO05D007361 2.6e-100 369.8 329 59.9
Gohir.A08G236800 Gossypium hirsutum HOM05D005914 ORTHO05D007361 3.4e-100 369.4 312 60.3
Actinidia22373 Actinidia chinensis HOM05D005914 ORTHO05D007361 4.4e-100 369.0 314 61.5
TWI63G0300 Tripterygium wilfordii HOM05D005914 ORTHO05D007361 1.7e-99 367.1 315 59.0
Gohir.D08G257400 Gossypium hirsutum HOM05D005914 ORTHO05D007361 3.8e-99 365.9 282 63.8
Eucgr.C01789 Eucalyptus grandis HOM05D005914 ORTHO05D007361 4.9e-99 365.5 318 58.5
Atru.chr7.2376 Acer truncatum HOM05D005914 ORTHO05D007361 8.4e-99 364.8 314 60.2
CSS0046358 Camellia sinensis var. sinensis HOM05D005914 ORTHO05D007361 3.2e-98 362.8 314 60.2
Potri.006G250800 Populus trichocarpa HOM05D005914 ORTHO05D007361 1.6e-97 360.5 325 58.5
GSVIVG01035808001 Vitis vinifera HOM05D005914 ORTHO05D007361 2.1e-97 360.1 312 60.3
Thhalv10004397m.g Eutrema salsugineum HOM05D005914 ORTHO05D007361 1.0e-96 357.8 327 58.1
Rhsim02G0194500 Rhododendron simsii HOM05D005914 ORTHO05D007361 1.7e-96 357.1 325 59.4
TAR625G1283 Trochodendron aralioides HOM05D005914 ORTHO05D007361 2.3e-96 356.7 323 57.3
RcHm_v2.0_Chr6g0298621 Rosa chinensis HOM05D005914 ORTHO05D007361 3.9e-96 355.9 320 59.7
Sabra06G0196100 Salix brachista HOM05D005914 ORTHO05D007361 3.9e-96 355.9 325 58.2
C07p42340 Brassica napus HOM05D005914 ORTHO05D007361 2.5e-95 353.2 328 57.0
Aa31LG11G4850 Aethionema arabicum HOM05D005914 ORTHO05D007361 3.3e-95 352.8 327 56.6
FvH4_2g29650 Fragaria vesca HOM05D005914 ORTHO05D007361 3.3e-95 352.8 314 59.2
Cc11_g01820 Coffea canephora HOM05D005914 ORTHO05D007361 5.6e-95 352.1 324 57.7
PSO170G3156 Papaver somniferum HOM05D005914 ORTHO05D007361 9.6e-95 351.3 315 58.1
HanXRQChr13g0402741 Helianthus annuus HOM05D005914 ORTHO05D007361 1.3e-94 350.9 315 57.5
FAN24G3193 Fragaria x ananassa HOM05D005914 ORTHO05D007361 1.6e-94 350.5 314 58.9
CANSAT80G0109 Cannabis sativa HOM05D005914 ORTHO05D007361 2.1e-94 350.1 314 58.3
Sp2g22050 Schrenkiella parvula HOM05D005914 ORTHO05D007361 8.1e-94 348.2 327 57.8
A06p36180 Brassica napus HOM05D005914 ORTHO05D007361 1.4e-93 347.4 328 57.0
PGR142G2371 Punica granatum HOM05D005914 ORTHO05D007361 1.4e-93 347.4 318 58.2
BolC7t44763H Brassica oleracea HOM05D005914 ORTHO05D007361 1.8e-93 347.1 332 56.3
CANSAT80G2406 Cannabis sativa HOM05D005914 ORTHO05D007361 1.8e-93 347.1 314 58.0
AT5G25480 Arabidopsis thaliana HOM05D005914 ORTHO05D007361 4.0e-93 345.9 325 57.8
BraA06t26540Z Brassica rapa HOM05D005914 ORTHO05D007361 4.0e-93 345.9 328 57.0
Ciclev10008576m.g Citrus clementina HOM05D005914 ORTHO05D007361 4.0e-93 345.9 314 58.9
Carub.0006s2334 Capsella rubella HOM05D005914 ORTHO05D007361 5.3e-93 345.5 337 55.8
AL6G37280 Arabidopsis lyrata HOM05D005914 ORTHO05D007361 6.9e-93 345.1 325 58.2
DCAR_006234 Daucus carota HOM05D005914 ORTHO05D007361 9.0e-93 344.7 315 57.5
ECA233G4604 Erigeron canadensis HOM05D005914 ORTHO05D007361 9.0e-93 344.7 331 54.7
PSO455G0041 Papaver somniferum HOM05D005914 ORTHO05D007361 1.2e-92 344.4 286 61.5
Dinv11618 Davidia involucrata HOM05D005914 ORTHO05D007361 2.0e-92 343.6 293 60.1
Aqoxy7G02060 Aquilegia oxysepala HOM05D005914 ORTHO05D007361 2.6e-92 343.2 324 53.7
ClCG08G013130 Citrullus lanatus HOM05D005914 ORTHO05D007361 7.6e-92 341.7 334 55.1
Lalb_Chr20g0122961 Lupinus albus HOM05D005914 ORTHO05D007361 1.7e-91 340.5 314 57.6
MELO3C011235.2 Cucumis melo HOM05D005914 ORTHO05D007361 2.2e-91 340.1 314 56.7
CsaV3_2G031850 Cucumis sativus L. HOM05D005914 ORTHO05D007361 2.9e-91 339.7 286 59.4
THA.LOC104799221 Tarenaya hassleriana HOM05D005914 ORTHO05D007361 8.4e-91 338.2 319 55.2
Lsat_1_v5_gn_6_22181 Lactuca sativa HOM05D005914 ORTHO05D007361 1.4e-90 337.4 326 53.7
Migut.E01476 Erythranthe guttata HOM05D005914 ORTHO05D007361 2.4e-90 336.7 321 55.5
VMungo0540G0716 Vigna mungo HOM05D005914 ORTHO05D007361 2.4e-90 336.7 288 60.8
Lj6g0019162 Lotus japonicus HOM05D005914 ORTHO05D007361 4.2e-90 335.9 315 58.4
CAN.G98.27 Capsicum annuum HOM05D005914 ORTHO05D007361 1.2e-89 334.3 317 56.2
Peaxi162Scf00341g00624 Petunia axillaris HOM05D005914 ORTHO05D007361 2.7e-89 333.2 313 56.5
Ca_00145_v3 Cicer arietinum L. HOM05D005914 ORTHO05D007361 1.0e-88 331.3 316 55.7
arahy.Tifrunner.gnm1.ann1.J9LH1L Arachis hypogaea HOM05D005914 ORTHO05D007361 3.9e-88 329.3 314 56.7
Nitab4.5_0000151g0200 Nicotiana tabacum HOM05D005914 ORTHO05D007361 3.9e-88 329.3 309 56.0
Nitab4.5_0001669g0040 Nicotiana tabacum HOM05D005914 ORTHO05D007361 5.1e-88 328.9 312 55.4
TPR.G25250 Trifolium pratense HOM05D005914 ORTHO05D008190 5.1e-88 328.9 314 56.4
Medtr2g009140 Medicago truncatula HOM05D005914 ORTHO05D007361 1.5e-87 327.4 316 55.4
Glyma.15G054900 Glycine max HOM05D005914 ORTHO05D007361 1.9e-87 327.0 311 56.9
Solyc08g067070.3 Solanum lycopersicum HOM05D005914 ORTHO05D007361 2.5e-87 326.6 316 55.4
arahy.Tifrunner.gnm1.ann1.T9E77A Arachis hypogaea HOM05D005914 ORTHO05D007361 4.3e-87 325.9 314 56.4
Psat1g215880 Pisum sativum HOM05D005914 ORTHO05D007361 5.6e-87 325.5 312 55.8
Sed0010731 Sechium edule HOM05D005914 ORTHO05D007361 1.6e-86 323.9 318 55.0
Sopen08g021020 Solanum pennellii HOM05D005914 ORTHO05D007361 2.8e-86 323.2 316 55.1
SGA_v2.0_scaffold4G02186 Striga asiatica HOM05D005914 ORTHO05D007361 2.8e-86 323.2 324 52.5
Nn2g11936 Nelumbo nucifera HOM05D005914 ORTHO05D007361 3.4e-84 316.2 295 57.6
Duzib150G0329 Durio zibethinus HOM05D005914 ORTHO05D007361 1.1e-82 311.2 313 52.4
unitig_747.g21653 Utricularia gibba HOM05D005914 ORTHO05D007361 1.1e-82 311.2 320 51.2
SalBow2G3472 Salvia bowleyana HOM05D005914 ORTHO05D007361 3.2e-82 309.7 334 50.9
Zm00001eb358040 Zea mays HOM05D005914 ORTHO05D007361 2.1e-81 307.0 313 53.0
HPP92_012620 Vanilla planifolia HOM05D005914 ORTHO05D007361 2.7e-81 306.6 313 50.8
CDE04G0852 Ceratophyllum demersum HOM05D005914 ORTHO05D007361 2.3e-80 303.5 313 50.2
Os01g0612000 Oryza sativa ssp. japonica HOM05D005914 ORTHO05D007361 1.3e-78 297.7 286 56.6
ATR0815G040 Amborella trichopoda HOM05D005914 ORTHO05D007361 4.8e-78 295.8 340 48.8
COL.COLO4_23983 Corchorus olitorius HOM05D005914 ORTHO05D007361 6.2e-78 295.4 313 51.4
Ah.12g063960 Amaranthus hybridus HOM05D005914 ORTHO05D007361 3.8e-75 286.2 163 84.0
arahy.Tifrunner.gnm1.ann1.71PCZ9 Arachis hypogaea HOM05D005914 ORTHO05D007361 1.0e-72 278.1 275 53.8
CARHR187910 Cardamine hirsuta HOM05D005914 ORTHO05D007361 5.1e-72 275.8 179 75.4
MD08G1143700 Malus domestica HOM05D005914 ORTHO05D007361 1.1e-71 274.6 282 54.3
Cpa.g.sc91.41 Carica papaya HOM05D005914 ORTHO05D007361 1.6e-70 270.8 163 79.8
Mapoly0011s0185 Marchantia polymorpha HOM05D005914 ORTHO05D007361 2.8e-70 270.0 191 67.0
AagrBONN_evm.TU.Sc2ySwM_228.810 Anthoceros agrestis HOM05D005914 ORTHO05D007361 9.0e-69 265.0 319 45.8
Lj7C718G14 Lonicera japonica HOM05D005914 ORTHO05D007361 5.0e-67 259.2 270 52.2
SMO146G0196 Selaginella moellendorffii HOM05D005914 ORTHO05D007361 3.6e-65 253.1 211 58.8
Prupe.1G473200 Prunus persica HOM05D005914 ORTHO05D007361 6.7e-64 248.8 282 52.5
Pp3c12_2410 Physcomitrium patens HOM05D005914 ORTHO05D007361 3.7e-62 243.0 207 55.6
FAN20G2480 Fragaria x ananassa HOM05D005914 ORTHO05D007361 1.2e-60 238.0 272 49.3
CBR_g3173 Chara braunii HOM05D005914 ORTHO05D007361 8.5e-59 231.9 249 48.6
Manes.16G119400 Manihot esculenta HOM05D005914 ORTHO05D007361 3.2e-58 229.9 252 50.4
FAN27G2538 Fragaria x ananassa HOM05D005914 ORTHO05D007361 7.2e-58 228.8 292 45.9
MBI04_g29855_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 8.5e-51 205.3 234 50.4
MCO14G456 Micromonas commoda HOM05D005914 ORTHO05D007361 2.7e-49 200.3 196 51.5
MD15G1439700 Malus domestica HOM05D005914 ORTHO05D007361 1.3e-46 191.4 407 35.9
PRCOL_00003212 Prasinoderma coloniale HOM05D005914 ORTHO05D007361 7.0e-45 185.7 182 50.5
Nitab4.5_0003498g0080 Nicotiana tabacum HOM05D005914 ORTHO05D007361 1.0e-43 181.8 298 40.6
SEGI_35502 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 6.5e-43 179.1 111 75.7
MBI04_g46184_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 1.1e-42 178.3 322 39.8
Phvul.006G205000 Phaseolus vulgaris HOM05D005914 ORTHO05D007361 9.4e-42 175.3 227 44.9
RcHm_v2.0_Chr1g0355831 Rosa chinensis HOM05D005914 ORTHO05D007361 1.4e-40 171.4 254 44.5
Glyma.08G177800 Glycine max HOM05D005914 ORTHO05D007361 2.8e-38 163.7 199 46.2
Ah.12g063950 Amaranthus hybridus HOM05D005914 ORTHO05D007361 7.0e-37 159.1 121 61.2
MSTRG.13986 Avicennia marina HOM05D005914 ORTHO05D007361 1.2e-36 158.3 227 42.3
PGR031G2948 Punica granatum HOM05D005914 ORTHO05D007361 3.0e-32 143.7 85 75.3
Sc09g0008460 Simmondsia chinensis HOM05D005914 ORTHO05D007361 5.2e-32 142.9 141 51.1
MCO11G560 Micromonas commoda HOM05D005914 ORTHO05D007361 2.6e-31 140.6 183 41.5
Sc09g0008580 Simmondsia chinensis HOM05D005914 ORTHO05D007361 2.6e-31 140.6 175 50.3
Cre12.g484600 Chlamydomonas reinhardtii HOM05D005914 ORTHO05D007361 1.7e-30 137.9 175 42.3
Sc09g0008440 Simmondsia chinensis HOM05D005914 ORTHO05D007361 3.1e-29 133.7 95 65.3
Oeu033137.1 Olea europaea HOM05D005914 ORTHO05D007361 2.3e-27 127.5 84 72.6
CAN.G374.12 Capsicum annuum HOM05D005914 ORTHO05D007361 2.8e-17 94.0 57 73.7
Aqoxy7G02061 Aquilegia oxysepala HOM05D005914 ORTHO05D007361 1.0e-16 92.0 64 64.1
Sc09g0008540 Simmondsia chinensis HOM05D002899 ORTHO05D003850 4.0e-16 90.1 71 63.4
MBI04_g10409_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 1.9e-13 81.3 56 66.1
MBI04_g46185_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 1.9e-13 81.3 56 66.1
SEGI_16557 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 1.9e-13 81.3 52 67.3
Hma1.2p1_0000F.1_g000780 Hydrangea macrophylla HOM05D005914 ORTHO05D007361 3.5e-12 77.0 150 38.0
Sc09g0008600 Simmondsia chinensis HOM05D005914 ORTHO05D007361 6.0e-12 76.3 43 86.0
MD08G1144900 Malus domestica HOM05D005914 ORTHO05D007361 2.8e-09 67.4 92 39.1
Hund25721 Selenicereus undatus HOM05D005914 ORTHO05D007361 8.9e-08 62.4 70 47.1


User provided reference genes

Program Settings