Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62030016 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 2201.8 1144 100.0
AUR62002591 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 2032.7 1144 93.5
EL10Ac3g06291 Beta vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1773.4 1144 82.1
Ah.07g203900 Amaranthus hybridus HOM05D004611 ORTHO05D005794 0.0e+00 1707.6 1146 78.7
Manes.03G208700 Manihot esculenta HOM05D004611 ORTHO05D005794 0.0e+00 1474.9 1148 69.0
QL06p013322 Quercus lobata HOM05D004611 ORTHO05D005794 0.0e+00 1467.6 1158 68.3
CiPaw.02G072100 Carya illinoinensis HOM05D004611 ORTHO05D005794 0.0e+00 1467.2 1157 68.6
Cfa015689 Carpinus fangiana HOM05D004611 ORTHO05D005794 0.0e+00 1465.3 1156 68.5
TWI73G0848 Tripterygium wilfordii HOM05D004611 ORTHO05D005794 0.0e+00 1464.5 1144 68.8
RcHm_v2.0_Chr4g0426211 Rosa chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1462.2 1151 68.0
Lj6A696G31 Lonicera japonica HOM05D004611 ORTHO05D005794 0.0e+00 1460.7 1167 68.1
CSS0006805 Camellia sinensis var. sinensis HOM05D004611 ORTHO05D005794 0.0e+00 1460.3 1154 68.3
Prupe.1G111500 Prunus persica HOM05D004611 ORTHO05D005794 0.0e+00 1457.2 1156 68.1
Gohir.A02G056200 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1454.9 1155 67.8
MD13G1148000 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1449.5 1181 66.5
Sc25g0001590 Simmondsia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1447.2 1112 70.7
Actinidia02513 Actinidia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1442.9 1165 67.0
FvH4_4g20770 Fragaria vesca HOM05D004611 ORTHO05D005794 0.0e+00 1441.8 1151 67.9
Potri.008G101200 Populus trichocarpa HOM05D004611 ORTHO05D005794 0.0e+00 1439.9 1161 66.6
MD16G1147800 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1437.9 1177 66.4
ClCG06G004360 Citrullus lanatus HOM05D004611 ORTHO05D005794 0.0e+00 1437.6 1156 68.6
FAN07G0444 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1435.6 1189 65.5
Rhsim02G0001700 Rhododendron simsii HOM05D004611 ORTHO05D005794 0.0e+00 1433.7 1156 66.3
PGR004G0015 Punica granatum HOM05D004611 ORTHO05D005794 0.0e+00 1432.2 1147 66.6
Sabra08G0076500 Salix brachista HOM05D004611 ORTHO05D005794 0.0e+00 1430.6 1142 67.8
Eucgr.H04083 Eucalyptus grandis HOM05D004611 ORTHO05D005794 0.0e+00 1426.8 1157 66.6
Glyma.09G031900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1426.4 1164 66.7
vmacro15164 Vaccinium macrocarpon HOM05D004611 ORTHO05D005794 0.0e+00 1425.6 1156 66.7
Thecc.04G307400 Theobroma cacao HOM05D004611 ORTHO05D005794 0.0e+00 1425.2 1154 67.2
COL.COLO4_34558 Corchorus olitorius HOM05D004611 ORTHO05D005794 0.0e+00 1423.7 1144 66.9
FAN12G0652 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1423.7 1192 65.8
Nn8g40813 Nelumbo nucifera HOM05D004611 ORTHO05D005794 0.0e+00 1418.3 1158 66.1
arahy.Tifrunner.gnm1.ann1.VX19JK Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1416.7 1157 67.1
arahy.Tifrunner.gnm1.ann1.J0E0JD Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1411.7 1160 66.9
Sed0020756 Sechium edule HOM05D004611 ORTHO05D005794 0.0e+00 1411.0 1152 66.3
Gohir.D02G061400 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1409.0 1155 66.3
Duzib151G0109 Durio zibethinus HOM05D004611 ORTHO05D005794 0.0e+00 1404.4 1153 66.7
Gorai.005G069100 Gossypium raimondii HOM05D004611 ORTHO05D005794 0.0e+00 1404.4 1155 66.0
DCAR_030442 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1402.9 1151 66.6
CANSAT78G0742 Cannabis sativa HOM05D004611 ORTHO05D005794 0.0e+00 1399.8 1171 65.5
THA.LOC104818864 Tarenaya hassleriana HOM05D004611 ORTHO05D005794 0.0e+00 1395.9 1145 66.5
Psat1g162720 Pisum sativum HOM05D004611 ORTHO05D005794 0.0e+00 1390.6 1155 65.6
Ciclev10004185m.g Citrus clementina HOM05D004611 ORTHO05D005794 0.0e+00 1389.4 1177 64.2
MELO3C021251.2 Cucumis melo HOM05D004611 ORTHO05D005794 0.0e+00 1389.4 1149 66.3
CsaV3_6G000020 Cucumis sativus L. HOM05D004611 ORTHO05D005794 0.0e+00 1388.6 1151 66.1
Aqoxy2G02628 Aquilegia oxysepala HOM05D004611 ORTHO05D005794 0.0e+00 1388.2 1175 65.4
Nitab4.5_0000062g0520 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1385.2 1146 65.6
GSVIVG01034941001 Vitis vinifera HOM05D004611 ORTHO05D005794 0.0e+00 1384.8 1138 65.6
Glyma.15G136900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1383.6 1165 65.1
Cc03_g00470 Coffea canephora HOM05D004611 ORTHO05D005794 0.0e+00 1383.2 1135 65.4
Migut.N00024 Erythranthe guttata HOM05D004611 ORTHO05D005794 0.0e+00 1377.8 1149 65.4
Ca_00946_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1377.1 1154 65.7
Ca_00952_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1377.1 1154 65.7
Lj6g0013514 Lotus japonicus HOM05D004611 ORTHO05D005794 0.0e+00 1374.4 1154 65.3
Lalb_Chr18g0058501 Lupinus albus HOM05D004611 ORTHO05D005794 0.0e+00 1372.1 1155 65.6
PSO541G3737 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1370.5 1156 64.0
PSO675G3276 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1370.5 1153 64.1
Phvul.006G121000 Phaseolus vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1367.8 1163 63.9
VMungo0540G0237 Vigna mungo HOM05D004611 ORTHO05D005794 0.0e+00 1366.3 1162 64.3
Atru.chr4.3104 Acer truncatum HOM05D004611 ORTHO05D005794 0.0e+00 1365.9 1151 65.2
CAN.G179.3 Capsicum annuum HOM05D004611 ORTHO05D005794 0.0e+00 1364.4 1145 64.7
Carub.0008s0980 Capsella rubella HOM05D004611 ORTHO05D005794 0.0e+00 1360.9 1150 65.1
SGA_v2.0_scaffold123G33405 Striga asiatica HOM05D004611 ORTHO05D005794 0.0e+00 1360.9 1211 63.6
ATR0693G069 Amborella trichopoda HOM05D004611 ORTHO05D005794 0.0e+00 1354.0 1148 65.1
MSTRG.21753 Avicennia marina HOM05D004611 ORTHO05D005794 0.0e+00 1354.0 1149 64.8
AL8G23880 Arabidopsis lyrata HOM05D004611 ORTHO05D005794 0.0e+00 1350.9 1152 64.8
CARHR258790 Cardamine hirsuta HOM05D004611 ORTHO05D005794 0.0e+00 1349.7 1152 64.9
Aa31LG3G6800 Aethionema arabicum HOM05D004611 ORTHO05D005794 0.0e+00 1348.2 1146 65.2
AT5G49930 Arabidopsis thaliana HOM05D004611 ORTHO05D005794 0.0e+00 1346.6 1151 64.3
Lsat_1_v5_gn_1_40220 Lactuca sativa HOM05D004611 ORTHO05D005794 0.0e+00 1346.3 1159 63.8
HanXRQChr11g0353941 Helianthus annuus HOM05D004611 ORTHO05D005794 0.0e+00 1342.0 1169 63.8
BcaB01g02933 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1338.9 1176 63.6
BcaC01g04844 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1338.9 1172 63.8
Haze_00831 Corylus avellana HOM05D004611 ORTHO05D005794 0.0e+00 1338.6 1176 63.4
Thhalv10012510m.g Eutrema salsugineum HOM05D004611 ORTHO05D005794 0.0e+00 1338.2 1167 64.4
MBI19_g32689_MAGBIO Magnolia biondii HOM05D004611 ORTHO05D005794 0.0e+00 1337.8 1152 63.3
C03p33270 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1335.9 1172 63.7
A03p27560 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1333.2 1176 63.7
BolC3t15649H Brassica oleracea HOM05D004611 ORTHO05D005794 0.0e+00 1333.2 1174 63.6
BraA03t11969Z Brassica rapa HOM05D004611 ORTHO05D005794 0.0e+00 1332.8 1174 63.5
Sp6g11490 Schrenkiella parvula HOM05D004611 ORTHO05D005794 0.0e+00 1327.0 1173 63.8
DCAR_002526 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1318.5 1150 63.1
ECA247G1486 Erigeron canadensis HOM05D004611 ORTHO05D005794 0.0e+00 1315.1 1150 63.7
TPR.G10113 Trifolium pratense HOM05D004611 ORTHO05D005794 0.0e+00 1290.8 1141 61.8
Os12g0564600 Oryza sativa ssp. japonica HOM05D004611 ORTHO05D005794 0.0e+00 1280.4 1176 60.9
Zm00001eb136770 Zea mays HOM05D004611 ORTHO05D005794 0.0e+00 1266.9 1213 58.6
Dinv15127 Davidia involucrata HOM05D004611 ORTHO05D005794 0.0e+00 1171.8 873 70.9
TAR362G1323 Trochodendron aralioides HOM05D004611 ORTHO05D005794 0.0e+00 1141.7 934 66.1
Pp3c6_29680 Physcomitrium patens HOM05D004611 ORTHO05D005794 0.0e+00 1111.7 1235 52.1
Nitab4.5_0003678g0010 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1094.3 1035 60.3
Mapoly0029s0152 Marchantia polymorpha HOM05D004611 ORTHO05D005794 0.0e+00 1088.6 1239 51.0
AagrBONN_evm.TU.Sc2ySwM_344.977 Anthoceros agrestis HOM05D004611 ORTHO05D005794 7.8e-312 1074.3 1214 51.3
CDE02G0179 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 1.0e-306 1057.0 741 72.5
FAN17G1213 Fragaria x ananassa HOM05D004611 ORTHO05D005794 3.4e-305 1052.0 919 63.2
SMO356G0321 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 2.9e-288 995.7 1153 50.8
GSVIVG01017617001 Vitis vinifera HOM05D004611 ORTHO05D005794 4.8e-259 898.7 743 64.1
CBR_g49302 Chara braunii HOM05D004611 ORTHO05D005794 9.9e-257 891.0 1399 42.0
Peaxi162Scf00126g01513 Petunia axillaris HOM05D004611 ORTHO05D005794 4.2e-239 832.4 593 73.5
Solyc01g057850.4 Solanum lycopersicum HOM05D004611 ORTHO05D005794 1.6e-235 820.5 591 72.6
Sopen01g023180 Solanum pennellii HOM05D004611 ORTHO05D005794 2.1e-222 776.9 546 73.4
PGSC0003DMG401001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 2.3e-221 773.5 539 74.4
unitig_746.g26903 Utricularia gibba HOM05D004611 ORTHO05D005794 4.1e-218 762.7 624 66.2
Oeu045272.1 Olea europaea HOM05D004611 ORTHO05D005794 4.2e-215 752.7 539 72.9
Sopen01g023170 Solanum pennellii HOM05D004611 ORTHO05D005794 9.8e-188 661.8 617 59.8
PRCOL_00000926 Prasinoderma coloniale HOM05D004611 ORTHO05D005794 1.8e-181 641.0 1168 37.7
Oeu045271.1 Olea europaea HOM05D004611 ORTHO05D005794 7.3e-175 619.0 598 60.0
HPP92_010928 Vanilla planifolia HOM05D004611 ORTHO05D005794 7.3e-167 592.4 562 59.3
Solyc01g057840.3 Solanum lycopersicum HOM05D004611 ORTHO05D005794 1.7e-152 544.7 550 54.9
PGSC0003DMG402001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 6.4e-147 526.2 540 56.1
Actinidia14243 Actinidia chinensis HOM05D004611 ORTHO05D005794 5.6e-143 513.1 464 61.2
HPP92_010927 Vanilla planifolia HOM05D004611 ORTHO05D005794 4.8e-142 510.0 399 67.2
Peaxi162Scf00126g01512 Petunia axillaris HOM05D004611 ORTHO05D005794 1.3e-126 458.8 539 51.6
GSVIVG01017631001 Vitis vinifera HOM05D004611 ORTHO05D005794 6.2e-126 456.4 341 69.8
Cpa.g.sc146.72 Carica papaya HOM05D004611 ORTHO05D005794 2.5e-119 434.5 326 68.4
MCO13G239 Micromonas commoda HOM05D004611 ORTHO05D005794 6.5e-115 419.9 778 35.9
unitig_746.g26902 Utricularia gibba HOM05D004611 ORTHO05D005794 6.7e-104 383.3 483 52.0
SEGI_12646 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 1.3e-102 379.0 537 43.9
SEGI_02813 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 2.3e-96 358.2 358 54.5
GSVIVG01017613001 Vitis vinifera HOM05D004611 ORTHO05D005794 2.8e-94 351.3 374 53.2
GSVIVG01017626001 Vitis vinifera HOM05D004611 ORTHO05D005794 5.3e-93 347.1 371 53.9
Cfa025106 Carpinus fangiana HOM05D004611 ORTHO05D005794 2.6e-92 344.7 1143 28.8
arahy.Tifrunner.gnm1.ann1.JPBR4U Arachis hypogaea HOM05D004611 ORTHO05D005794 3.2e-90 337.8 233 77.3
Cre17.g734961 Chlamydomonas reinhardtii HOM05D004611 ORTHO05D005794 5.2e-80 303.9 261 57.5
Oeu046590.2 Olea europaea HOM05D004611 ORTHO05D005794 1.5e-79 302.4 390 51.5
CDE02G2799 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 2.9e-75 288.1 253 61.7
TAR362G0625 Trochodendron aralioides HOM05D004611 ORTHO05D005794 2.7e-68 265.0 224 66.1
SEGI_18823 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 8.9e-64 250.0 147 83.0
arahy.Tifrunner.gnm1.ann1.PAF7VJ Arachis hypogaea HOM05D004611 ORTHO05D005794 4.4e-63 247.7 149 84.6
Cpa.g.sc146.70 Carica papaya HOM05D004611 ORTHO05D005794 1.1e-61 243.0 218 59.2
Actinidia07518 Actinidia chinensis HOM05D004611 ORTHO05D005794 3.6e-57 228.0 198 58.1
GSVIVG01017633001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.4e-56 226.1 175 64.6
Lsat_1_v5_gn_5_111761 Lactuca sativa HOM05D004611 ORTHO05D029976 1.5e-55 222.6 369 42.3
Lsat_1_v5_gn_3_85221 Lactuca sativa HOM05D004611 ORTHO05D029976 8.3e-54 216.9 369 41.5
Lsat_1_v5_gn_2_109460 Lactuca sativa HOM05D004611 ORTHO05D029976 1.6e-52 212.6 369 40.7
Lsat_1_v5_gn_1_27520 Lactuca sativa HOM05D004611 ORTHO05D029976 2.7e-52 211.8 369 40.9
Actinidia07517 Actinidia chinensis HOM05D004611 ORTHO05D005794 2.3e-48 198.7 106 91.5
arahy.Tifrunner.gnm1.ann1.MSK2EL Arachis hypogaea HOM05D004611 ORTHO05D005794 5.8e-47 194.1 113 85.0
arahy.Tifrunner.gnm1.ann1.631YT7 Arachis hypogaea HOM05D004611 ORTHO05D005794 1.4e-45 189.5 111 84.7
arahy.Tifrunner.gnm1.ann1.N4MQ0H Arachis hypogaea HOM05D004611 ORTHO05D005794 3.2e-45 188.3 113 83.2
arahy.Tifrunner.gnm1.ann1.G1FZ3Z Arachis hypogaea HOM05D004611 ORTHO05D005794 6.0e-44 184.1 113 81.4
arahy.Tifrunner.gnm1.ann1.80REVR Arachis hypogaea HOM05D004611 ORTHO05D005794 7.8e-44 183.7 113 81.4
arahy.Tifrunner.gnm1.ann1.KEPZ3C Arachis hypogaea HOM05D004611 ORTHO05D005794 6.2e-41 174.1 109 81.7
arahy.Tifrunner.gnm1.ann1.F9ANIH Arachis hypogaea HOM05D004611 ORTHO05D005794 3.1e-40 171.8 106 82.1
Atru.chr6.2576 Acer truncatum HOM05D004611 ORTHO05D005794 1.2e-39 169.9 97 85.6
CANSAT35G0087 Cannabis sativa HOM05D004611 ORTHO05D005794 2.6e-39 168.7 179 53.1
SMO356G0537 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 7.1e-37 160.6 594 28.3
Actinidia25067 Actinidia chinensis HOM05D004611 ORTHO05D005794 1.2e-36 159.8 270 41.5
arahy.Tifrunner.gnm1.ann1.LTB099 Arachis hypogaea HOM05D004611 ORTHO05D005794 1.2e-36 159.8 99 79.8
Cpa.g.sc146.71 Carica papaya HOM05D004611 ORTHO05D005794 1.1e-34 153.3 82 92.7
SMO356G0656 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 1.9e-29 136.0 123 58.5
SMO356G0045 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 1.5e-26 126.3 148 45.3
HanXRQChr06g0164931 Helianthus annuus HOM05D004611 ORTHO05D005794 6.4e-22 110.9 73 74.0
TPR.G31403 Trifolium pratense HOM05D004611 ORTHO05D005794 6.4e-22 110.9 73 76.7
arahy.Tifrunner.gnm1.ann1.0CQZ6Z Arachis hypogaea HOM05D000862 ORTHO05D000003 1.2e-20 106.7 75 74.7
arahy.Tifrunner.gnm1.ann1.R4H24K Arachis hypogaea HOM05D000862 ORTHO05D000003 3.5e-20 105.1 75 73.3
HanXRQChr04g0096671 Helianthus annuus HOM05D004611 ORTHO05D005794 1.0e-19 103.6 73 71.2
COL.COLO4_13521 Corchorus olitorius HOM05D004611 ORTHO05D005794 3.0e-19 102.1 152 43.4
TPR.G40539 Trifolium pratense HOM05D004611 ORTHO05D005794 4.3e-18 98.2 146 46.6
Lsat_1_v5_gn_1_111061 Lactuca sativa HOM05D004611 ORTHO05D233625 7.6e-07 60.8 57 59.6


User provided reference genes

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