Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62005532 Chenopodium quinoa HOM05D004105 ORTHO05D005649 6.5e-20 99.8 50 100.0
AUR62029557 Chenopodium quinoa HOM05D004105 ORTHO05D138218 6.5e-20 99.8 50 100.0
AUR62029560 Chenopodium quinoa HOM05D004105 ORTHO05D005649 6.5e-20 99.8 50 100.0
AUR62034822 Chenopodium quinoa HOM05D004105 ORTHO05D005649 2.9e-12 74.3 36 100.0
Cc10_g12640 Coffea canephora HOM05D004105 ORTHO05D005649 2.9e-12 74.3 36 100.0
Sc04g0000430 Simmondsia chinensis HOM05D004105 ORTHO05D005649 8.5e-12 72.8 36 97.2
TWI39G0681 Tripterygium wilfordii HOM05D004105 ORTHO05D005649 1.9e-11 71.6 36 94.4
EL10Ac5g11355 Beta vulgaris HOM05D004105 ORTHO05D005649 2.5e-11 71.2 36 94.4
CiPaw.11G003700 Carya illinoinensis HOM05D004105 ORTHO05D005649 2.5e-11 71.2 36 94.4
Lj9C482T3 Lonicera japonica HOM05D004105 ORTHO05D005649 2.5e-11 71.2 36 94.4
TWI23G0168 Tripterygium wilfordii HOM05D004105 ORTHO05D005649 2.5e-11 71.2 36 94.4
Actinidia08890 Actinidia chinensis HOM05D004105 ORTHO05D005649 3.2e-11 70.9 36 94.4
Actinidia36827 Actinidia chinensis HOM05D004105 ORTHO05D030951 3.2e-11 70.9 36 94.4
Cfa018749 Carpinus fangiana HOM05D004105 ORTHO05D005649 4.2e-11 70.5 36 94.4
Haze_07185 Corylus avellana HOM05D004105 ORTHO05D005649 4.2e-11 70.5 36 94.4
QL11p026924 Quercus lobata HOM05D004105 ORTHO05D005649 4.2e-11 70.5 36 94.4
PGSC0003DMG400032546 Solanum tuberosum HOM05D004105 ORTHO05D005649 4.2e-11 70.5 36 94.4
SGA_v2.0_scaffold99G29471 Striga asiatica HOM05D004105 ORTHO05D005649 4.2e-11 70.5 36 94.4
TAR371G1205 Trochodendron aralioides HOM05D004105 ORTHO05D005649 4.2e-11 70.5 36 94.4
Atru.chr6.1872 Acer truncatum HOM05D004105 ORTHO05D005649 5.5e-11 70.1 36 91.7
BcaC04g23339 Brassica carinata HOM05D004105 ORTHO05D005649 5.5e-11 70.1 36 94.4
C09p09420 Brassica napus HOM05D004105 ORTHO05D005649 5.5e-11 70.1 36 94.4
BolC9t53854H Brassica oleracea HOM05D004105 ORTHO05D005649 5.5e-11 70.1 36 94.4
FvH4_5g08950 Fragaria vesca HOM05D004105 ORTHO05D005649 5.5e-11 70.1 36 94.4
FAN04G0399 Fragaria x ananassa HOM05D004105 ORTHO05D005649 5.5e-11 70.1 36 94.4
FAN08G1339 Fragaria x ananassa HOM05D004105 ORTHO05D005649 5.5e-11 70.1 36 94.4
FAN13G0496 Fragaria x ananassa HOM05D004105 ORTHO05D005649 5.5e-11 70.1 36 94.4
FAN18G1589 Fragaria x ananassa HOM05D004105 ORTHO05D005649 5.5e-11 70.1 36 94.4
Nitab4.5_0002672g0010 Nicotiana tabacum HOM05D004105 ORTHO05D029789 5.5e-11 70.1 36 94.4
Peaxi162Scf00681g00117 Petunia axillaris HOM05D004105 ORTHO05D005649 5.5e-11 70.1 36 91.7
RcHm_v2.0_Chr7g0189421 Rosa chinensis HOM05D004105 ORTHO05D005649 5.5e-11 70.1 36 94.4
Solyc04g009200.3 Solanum lycopersicum HOM05D004105 ORTHO05D005649 5.5e-11 70.1 36 91.7
Sopen04g004330 Solanum pennellii HOM05D004105 ORTHO05D005649 5.5e-11 70.1 36 91.7
Actinidia18331 Actinidia chinensis HOM05D004105 ORTHO05D005649 7.2e-11 69.7 36 91.7
A09p08350 Brassica napus HOM05D004105 ORTHO05D005649 7.2e-11 69.7 36 91.7
BraA09t36484Z Brassica rapa HOM05D004105 ORTHO05D005649 7.2e-11 69.7 36 91.7
ClCG09G016340 Citrullus lanatus HOM05D004105 ORTHO05D005649 7.2e-11 69.7 36 91.7
MELO3C018572.2 Cucumis melo HOM05D004105 ORTHO05D005649 7.2e-11 69.7 36 91.7
CsaV3_7G007260 Cucumis sativus L. HOM05D004105 ORTHO05D005649 7.2e-11 69.7 36 91.7
Duzib205G0778 Durio zibethinus HOM05D004105 ORTHO05D005649 7.2e-11 69.7 36 91.7
Nn4g22230 Nelumbo nucifera HOM05D004105 ORTHO05D005649 7.2e-11 69.7 36 88.9
Thecc.03G135100 Theobroma cacao HOM05D004105 ORTHO05D005649 7.2e-11 69.7 36 91.7
CSS0005977 Camellia sinensis var. sinensis HOM05D004105 ORTHO05D005649 9.4e-11 69.3 36 91.7
CSS0020466 Camellia sinensis var. sinensis HOM05D004105 ORTHO05D005649 9.4e-11 69.3 36 91.7
CARHR277440 Cardamine hirsuta HOM05D004105 ORTHO05D005649 1.2e-10 68.9 36 91.7
Cpa.g.sc4.152 Carica papaya HOM05D004105 ORTHO05D005649 1.2e-10 68.9 36 91.7
Dinv11203 Davidia involucrata HOM05D004105 ORTHO05D005649 1.2e-10 68.9 36 88.9
Manes.14G048100 Manihot esculenta HOM05D004105 ORTHO05D005649 1.2e-10 68.9 36 91.7
PSO017G4116 Papaver somniferum HOM05D004105 ORTHO05D005649 1.2e-10 68.9 36 91.7
PSO478G2355 Papaver somniferum HOM05D004105 ORTHO05D005649 1.2e-10 68.9 36 91.7
PGR083G1562 Punica granatum HOM05D004105 ORTHO05D005649 1.2e-10 68.9 36 88.9
Sed0023678 Sechium edule HOM05D004105 ORTHO05D005649 1.2e-10 68.9 36 88.9
Hund02468 Selenicereus undatus HOM05D004105 ORTHO05D005649 1.2e-10 68.9 36 91.7
DCAR_021646 Daucus carota HOM05D004105 ORTHO05D005649 1.6e-10 68.6 36 88.9
HanXRQChr09g0273511 Helianthus annuus HOM05D004105 ORTHO05D005649 1.6e-10 68.6 36 91.7
Rhsim12G0177900 Rhododendron simsii HOM05D004105 ORTHO05D005649 1.6e-10 68.6 36 91.7
TAR622G0102 Trochodendron aralioides HOM05D004105 ORTHO05D005649 1.6e-10 68.6 36 88.9
Aqoxy3G01668 Aquilegia oxysepala HOM05D004105 ORTHO05D005649 2.1e-10 68.2 36 91.7
AT5G63570 Arabidopsis thaliana HOM05D004105 ORTHO05D005649 2.1e-10 68.2 36 91.7
MSTRG.13687 Avicennia marina HOM05D004105 ORTHO05D005649 2.1e-10 68.2 35 94.3
Haze_07186 Corylus avellana HOM05D004105 ORTHO05D005649 2.1e-10 68.2 36 91.7
Duzib068G0759 Durio zibethinus HOM05D004105 ORTHO05D005649 2.1e-10 68.2 36 88.9
Gohir.A07G048500 Gossypium hirsutum HOM05D004105 ORTHO05D005649 2.1e-10 68.2 36 91.7
Gohir.D07G052800 Gossypium hirsutum HOM05D004105 ORTHO05D005649 2.1e-10 68.2 36 91.7
Gorai.001G055800 Gossypium raimondii HOM05D004105 ORTHO05D005649 2.1e-10 68.2 36 91.7
Oeu036699.1 Olea europaea HOM05D004105 ORTHO05D005649 2.1e-10 68.2 36 88.9
unitig_32.g11186 Utricularia gibba HOM05D004105 ORTHO05D005649 2.1e-10 68.2 36 91.7
BcaB04g19926 Brassica carinata HOM05D004105 ORTHO05D005649 2.7e-10 67.8 36 91.7
Thhalv10010337m.g Eutrema salsugineum HOM05D004105 ORTHO05D005649 2.7e-10 67.8 36 91.7
Sabra15G0121600 Salix brachista HOM05D004105 ORTHO05D005649 2.7e-10 67.8 36 88.9
Sp5g13290 Schrenkiella parvula HOM05D004105 ORTHO05D005649 2.7e-10 67.8 36 91.7
AL5G28210 Arabidopsis lyrata HOM05D004105 ORTHO05D005649 3.6e-10 67.4 36 91.7
AL8G40650 Arabidopsis lyrata HOM05D004105 ORTHO05D005649 3.6e-10 67.4 36 88.9
AT3G48730 Arabidopsis thaliana HOM05D004105 ORTHO05D005649 3.6e-10 67.4 36 91.7
A06p30190 Brassica napus HOM05D004105 ORTHO05D005649 3.6e-10 67.4 36 88.9
BraA06t25970Z Brassica rapa HOM05D004105 ORTHO05D005649 3.6e-10 67.4 36 88.9
Carub.0005s1489 Capsella rubella HOM05D004105 ORTHO05D005649 3.6e-10 67.4 36 91.7
CDE05G1664 Ceratophyllum demersum HOM05D004105 ORTHO05D005649 3.6e-10 67.4 36 86.1
Thhalv10004138m.g Eutrema salsugineum HOM05D004105 ORTHO05D005649 3.6e-10 67.4 36 88.9
Dinv23185 Davidia involucrata HOM05D005705 ORTHO05D007152 4.7e-10 67.0 36 86.1
Hma1.2p1_0572F.1_g181070 Hydrangea macrophylla HOM05D004105 ORTHO05D005649 4.7e-10 67.0 36 88.9
MBI04_g30438_MAGBIO Magnolia biondii HOM05D004105 ORTHO05D005649 4.7e-10 67.0 36 86.1
MBI11_g13058_MAGBIO Magnolia biondii HOM05D004105 ORTHO05D005649 4.7e-10 67.0 36 86.1
Manes.06G122800 Manihot esculenta HOM05D004105 ORTHO05D005649 4.7e-10 67.0 36 88.9
Peaxi162Scf00334g00121 Petunia axillaris HOM05D004105 ORTHO05D005649 4.7e-10 67.0 36 88.9
vmacro16732 Vaccinium macrocarpon HOM05D004105 ORTHO05D005649 4.7e-10 67.0 36 88.9
BcaB02g09750 Brassica carinata HOM05D004105 ORTHO05D005649 6.1e-10 66.6 36 88.9
BcaC01g02611 Brassica carinata HOM05D004105 ORTHO05D005649 6.1e-10 66.6 36 88.9
C03p62870 Brassica napus HOM05D004105 ORTHO05D005649 6.1e-10 66.6 36 88.9
BolC3t18541H Brassica oleracea HOM05D004105 ORTHO05D005649 6.1e-10 66.6 36 88.9
CAN.G619.6 Capsicum annuum HOM05D004105 ORTHO05D005649 6.1e-10 66.6 36 88.9
Ciclev10031414m.g Citrus clementina HOM05D004105 ORTHO05D005649 6.1e-10 66.6 36 86.1
ECA247G3132 Erigeron canadensis HOM05D004105 ORTHO05D005649 6.1e-10 66.6 36 88.9
MD06G1136900 Malus domestica HOM05D004105 ORTHO05D005649 6.1e-10 66.6 36 86.1
Potri.015G101100 Populus trichocarpa HOM05D004105 ORTHO05D005649 6.1e-10 66.6 35 91.4
Sp2g26660 Schrenkiella parvula HOM05D004105 ORTHO05D005649 6.1e-10 66.6 36 88.9
Zm00001eb291360 Zea mays HOM05D004105 ORTHO05D005649 6.1e-10 66.6 36 83.3
Aa31LG1G18370 Aethionema arabicum HOM05D004105 ORTHO05D005649 7.9e-10 66.2 36 88.9
Lj1g0022155 Lotus japonicus HOM05D004105 ORTHO05D005649 7.9e-10 66.2 36 86.1
Rhsim08G0193500 Rhododendron simsii HOM05D004105 ORTHO05D005649 7.9e-10 66.2 36 86.1
ECA232G0449 Erigeron canadensis HOM05D004105 ORTHO05D005649 1.0e-09 65.9 36 88.9
Migut.E00706 Erythranthe guttata HOM05D004105 ORTHO05D005649 1.4e-09 65.5 36 86.1
Potri.012G103000 Populus trichocarpa HOM05D004105 ORTHO05D005649 1.8e-09 65.1 36 88.9
TPR.G38501 Trifolium pratense HOM05D004105 ORTHO05D005649 1.8e-09 65.1 36 86.1
HanXRQChr02g0034141 Helianthus annuus HOM05D004105 ORTHO05D005649 2.3e-09 64.7 36 86.1
Duzib084G0440 Durio zibethinus HOM05D004105 ORTHO05D005649 3.0e-09 64.3 36 83.3
Gohir.A03G053920 Gossypium hirsutum HOM05D004105 ORTHO05D005649 3.0e-09 64.3 35 85.7
Gohir.A03G054100 Gossypium hirsutum HOM05D004105 ORTHO05D005649 3.0e-09 64.3 35 85.7
Gohir.D03G112900 Gossypium hirsutum HOM05D004105 ORTHO05D005649 3.0e-09 64.3 35 85.7
Gohir.D03G112950 Gossypium hirsutum HOM05D004105 ORTHO05D005649 3.0e-09 64.3 35 85.7
MD14G1151700 Malus domestica HOM05D004105 ORTHO05D005649 3.0e-09 64.3 36 83.3
THA.LOC104818177 Tarenaya hassleriana HOM05D004105 ORTHO05D005649 3.0e-09 64.3 36 86.1
ATR0582G244 Amborella trichopoda HOM05D004105 ORTHO05D005649 3.9e-09 63.9 36 83.3
Ca_15293_v3 Cicer arietinum L. HOM05D004105 ORTHO05D005649 3.9e-09 63.9 36 83.3
Eucgr.K00727 Eucalyptus grandis HOM05D004105 ORTHO05D005649 3.9e-09 63.9 36 80.6
Glyma.04G002900 Glycine max HOM05D004105 ORTHO05D005649 3.9e-09 63.9 36 83.3
Glyma.06G002900 Glycine max HOM05D004105 ORTHO05D005649 3.9e-09 63.9 36 83.3
Lalb_Chr08g0246741 Lupinus albus HOM05D004105 ORTHO05D005649 3.9e-09 63.9 36 83.3
Medtr3g118070 Medicago truncatula HOM05D004105 ORTHO05D005649 3.9e-09 63.9 36 83.3
Phvul.009G118500 Phaseolus vulgaris HOM05D004105 ORTHO05D005649 3.9e-09 63.9 36 83.3
Prupe.5G146800 Prunus persica HOM05D004105 ORTHO05D005649 3.9e-09 63.9 36 83.3
VMungo1309G1206 Vigna mungo HOM05D004105 ORTHO05D005649 3.9e-09 63.9 36 83.3
Carub.0008s2430 Capsella rubella HOM05D004105 ORTHO05D005649 5.1e-09 63.5 36 83.3
arahy.Tifrunner.gnm1.ann1.M8Q52W Arachis hypogaea HOM05D004105 ORTHO05D005649 8.8e-09 62.8 36 83.3
Gorai.003G119100 Gossypium raimondii HOM05D004105 ORTHO05D005649 8.8e-09 62.8 35 82.9
Lsat_1_v5_gn_1_32701 Lactuca sativa HOM05D004105 ORTHO05D005649 8.8e-09 62.8 36 83.3
Psat5g001920 Pisum sativum HOM05D004105 ORTHO05D005649 8.8e-09 62.8 36 80.6
RcHm_v2.0_Chr7g0199591 Rosa chinensis HOM05D004105 ORTHO05D005649 8.8e-09 62.8 36 83.3
Os08g0532200 Oryza sativa ssp. japonica HOM05D004105 ORTHO05D005649 1.5e-08 62.0 36 77.8
HPP92_000338 Vanilla planifolia HOM05D004105 ORTHO05D005649 1.5e-08 62.0 36 77.8
arahy.Tifrunner.gnm1.ann1.NV4Y6S Arachis hypogaea HOM05D004105 ORTHO05D005649 3.3e-08 60.8 36 77.8
SHI10683 Sapria himalayana HOM05D004105 ORTHO05D005649 3.3e-08 60.8 35 77.1
arahy.Tifrunner.gnm1.ann1.26LP8U Arachis hypogaea HOM05D004105 ORTHO05D005649 4.4e-08 60.5 36 77.8
Pp3c16_12390 Physcomitrium patens HOM05D004105 ORTHO05D005649 7.4e-08 59.7 36 80.6
CDE02G1094 Ceratophyllum demersum HOM05D004105 ORTHO05D030951 9.7e-08 59.3 36 77.8
Cre03.g158000 Chlamydomonas reinhardtii HOM05D004105 ORTHO05D005649 2.2e-07 58.2 36 75.0
Mapoly0094s0038 Marchantia polymorpha HOM05D004105 ORTHO05D005649 2.2e-07 58.2 36 77.8
Pp3c27_4150 Physcomitrium patens HOM05D004105 ORTHO05D005649 2.2e-07 58.2 35 80.0
MCO04G178 Micromonas commoda HOM05D004105 ORTHO05D005649 3.7e-07 57.4 36 75.0
SMO337G0012 Selaginella moellendorffii HOM05D004105 ORTHO05D005649 4.8e-07 57.0 36 75.0
SEGI_17449 Sequoiadendron giganteum HOM05D004105 ORTHO05D005649 8.2e-07 56.2 36 72.2
AagrBONN_evm.TU.Sc2ySwM_368.3191 Anthoceros agrestis HOM05D004105 ORTHO05D005649 1.8e-06 55.1 34 73.5
CBR_g49915 Chara braunii HOM05D004105 ORTHO05D005649 7.0e-06 53.1 35 71.4


User provided reference genes

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