Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62029060 Chenopodium quinoa HOM05D005979 ORTHO05D007848 4.0e-133 478.0 230 100.0
AUR62033954 Chenopodium quinoa HOM05D005979 ORTHO05D007848 5.5e-106 387.9 242 81.0
Ah.09g228190 Amaranthus hybridus HOM05D005979 ORTHO05D007848 2.9e-99 365.5 243 72.4
EL10Ac8g19200 Beta vulgaris HOM05D005979 ORTHO05D007848 2.3e-88 329.3 244 66.4
Dinv35473 Davidia involucrata HOM05D005979 ORTHO05D007848 8.8e-88 327.4 243 65.8
Sc18g0002150 Simmondsia chinensis HOM05D005979 ORTHO05D007848 3.3e-87 325.5 243 64.6
CSS0035132 Camellia sinensis var. sinensis HOM05D005979 ORTHO05D007848 9.1e-85 317.4 243 63.8
Actinidia40001 Actinidia chinensis HOM05D005979 ORTHO05D007848 2.0e-84 316.2 243 64.6
TWI77G1019 Tripterygium wilfordii HOM05D005979 ORTHO05D007848 4.5e-84 315.1 241 61.8
CiPaw.09G046000 Carya illinoinensis HOM05D005979 ORTHO05D007848 7.7e-84 314.3 243 62.1
Manes.09G007200 Manihot esculenta HOM05D005979 ORTHO05D007848 1.7e-83 313.2 243 62.1
AUR62032907 Chenopodium quinoa HOM05D005979 ORTHO05D007848 2.2e-83 312.8 210 75.7
HanXRQChr05g0144951 Helianthus annuus HOM05D005979 ORTHO05D007848 2.2e-83 312.8 244 61.1
vmacro19992 Vaccinium macrocarpon HOM05D005979 ORTHO05D007848 3.8e-83 312.0 275 57.1
RcHm_v2.0_Chr4g0414381 Rosa chinensis HOM05D005979 ORTHO05D007848 5.0e-83 311.6 244 62.3
Cpa.g.sc5.208 Carica papaya HOM05D005979 ORTHO05D007848 6.5e-83 311.2 241 62.7
Nn7g36654 Nelumbo nucifera HOM05D005979 ORTHO05D007848 6.5e-83 311.2 243 61.3
FvH4_4g13730 Fragaria vesca HOM05D005979 ORTHO05D007848 8.5e-83 310.8 244 62.3
FAN12G2831 Fragaria x ananassa HOM05D005979 ORTHO05D007848 8.5e-83 310.8 244 62.3
FAN17G0168 Fragaria x ananassa HOM05D005979 ORTHO05D007848 2.5e-82 309.3 244 62.3
THA.LOC104823212 Tarenaya hassleriana HOM05D005979 ORTHO05D007848 4.2e-82 308.5 241 60.2
Gorai.013G116500 Gossypium raimondii HOM05D005979 ORTHO05D007848 1.6e-81 306.6 243 61.7
AL3G21560 Arabidopsis lyrata HOM05D005979 ORTHO05D007848 2.7e-81 305.8 241 60.6
RcHm_v2.0_Chr6g0280571 Rosa chinensis HOM05D005979 ORTHO05D007848 2.7e-81 305.8 244 60.7
Ciclev10021922m.g Citrus clementina HOM05D005979 ORTHO05D007848 3.6e-81 305.4 244 61.1
GSVIVG01033606001 Vitis vinifera HOM05D005979 ORTHO05D007848 3.6e-81 305.4 243 60.9
ClCG09G016040 Citrullus lanatus HOM05D005979 ORTHO05D007848 6.1e-81 304.7 242 61.2
Oeu013750.3 Olea europaea HOM05D005979 ORTHO05D007848 8.0e-81 304.3 284 55.6
Solyc03g098170.3 Solanum lycopersicum HOM05D005979 ORTHO05D007848 1.0e-80 303.9 244 60.2
Thecc.05G139000 Theobroma cacao HOM05D005979 ORTHO05D007848 1.0e-80 303.9 243 60.5
CAN.G637.20 Capsicum annuum HOM05D005979 ORTHO05D007848 1.4e-80 303.5 241 59.8
Cc02_g19250 Coffea canephora HOM05D005979 ORTHO05D007848 1.4e-80 303.5 244 60.2
Sopen03g028870 Solanum pennellii HOM05D005979 ORTHO05D007848 1.4e-80 303.5 244 60.2
BcaB04g21222 Brassica carinata HOM05D005979 ORTHO05D007848 1.8e-80 303.1 241 59.8
Gohir.D13G103900 Gossypium hirsutum HOM05D005979 ORTHO05D007848 1.8e-80 303.1 243 61.3
Gohir.A13G100300 Gossypium hirsutum HOM05D005979 ORTHO05D007848 2.3e-80 302.8 243 61.3
MD04G1012500 Malus domestica HOM05D005979 ORTHO05D007848 2.3e-80 302.8 244 60.7
Carub.0003s0939 Capsella rubella HOM05D005979 ORTHO05D007848 3.0e-80 302.4 241 59.8
MBI09_g07121_MAGBIO Magnolia biondii HOM05D005979 ORTHO05D007848 3.0e-80 302.4 243 60.1
Aa31LG3G2790 Aethionema arabicum HOM05D005979 ORTHO05D007848 5.2e-80 301.6 241 59.3
Hma1.2p1_0075F.1_g039230 Hydrangea macrophylla HOM05D005979 ORTHO05D007848 6.7e-80 301.2 228 64.0
Rhsim05G0172800 Rhododendron simsii HOM05D005979 ORTHO05D007848 6.7e-80 301.2 295 51.9
Thhalv10021412m.g Eutrema salsugineum HOM05D005979 ORTHO05D007848 8.8e-80 300.8 241 60.2
Potri.006G041400 Populus trichocarpa HOM05D005979 ORTHO05D007848 8.8e-80 300.8 241 58.9
PGSC0003DMG400031053 Solanum tuberosum HOM05D005979 ORTHO05D007848 8.8e-80 300.8 244 59.8
Prupe.7G257800 Prunus persica HOM05D005979 ORTHO05D007848 1.2e-79 300.4 244 60.2
Cfa016688 Carpinus fangiana HOM05D005979 ORTHO05D007848 1.5e-79 300.1 276 54.0
Duzib093G1926 Durio zibethinus HOM05D005979 ORTHO05D007848 1.5e-79 300.1 243 60.9
Lj5g0020498 Lotus japonicus HOM05D005979 ORTHO05D007848 2.0e-79 299.7 244 59.8
AT3G10220 Arabidopsis thaliana HOM05D005979 ORTHO05D007848 3.3e-79 298.9 241 59.8
Migut.B00389 Erythranthe guttata HOM05D005979 ORTHO05D007848 3.3e-79 298.9 243 59.3
Sed0017937 Sechium edule HOM05D005979 ORTHO05D007848 3.3e-79 298.9 242 60.3
Hund26899 Selenicereus undatus HOM05D005979 ORTHO05D007848 4.4e-79 298.5 253 60.5
Lalb_Chr02g0156521 Lupinus albus HOM05D005979 ORTHO05D007848 5.7e-79 298.1 244 60.2
ECA232G1805 Erigeron canadensis HOM05D005979 ORTHO05D007848 7.5e-79 297.7 243 58.8
Sp3g08500 Schrenkiella parvula HOM05D005979 ORTHO05D007848 7.5e-79 297.7 241 59.3
BolC5t34447H Brassica oleracea HOM05D005979 ORTHO05D007848 9.7e-79 297.4 241 59.3
unitig_0.g99 Utricularia gibba HOM05D005979 ORTHO05D007848 1.7e-78 296.6 245 59.2
CsaV3_4G027840 Cucumis sativus L. HOM05D005979 ORTHO05D007848 2.2e-78 296.2 242 59.5
Aqoxy2G00350 Aquilegia oxysepala HOM05D005979 ORTHO05D007848 3.7e-78 295.4 243 58.8
BraA05t22680Z Brassica rapa HOM05D005979 ORTHO05D007848 6.3e-78 294.7 242 59.1
Gohir.D04G132100 Gossypium hirsutum HOM05D005979 ORTHO05D007848 6.3e-78 294.7 243 59.3
C05p57920 Brassica napus HOM05D005979 ORTHO05D007848 8.2e-78 294.3 242 59.5
CARHR084710 Cardamine hirsuta HOM05D005979 ORTHO05D007848 8.2e-78 294.3 241 58.5
CDE08G1123 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 1.4e-77 293.5 243 57.6
BcaNung05525 Brassica carinata HOM05D005979 ORTHO05D007848 1.8e-77 293.1 242 58.7
Medtr1g051215 Medicago truncatula HOM05D005979 ORTHO05D007848 1.8e-77 293.1 244 60.2
TAR633G0311 Trochodendron aralioides HOM05D005979 ORTHO05D007848 2.4e-77 292.7 230 60.4
CANSAT64G2596 Cannabis sativa HOM05D005979 ORTHO05D007848 4.1e-77 292.0 244 59.8
Lsat_1_v5_gn_0_460 Lactuca sativa HOM05D005979 ORTHO05D007848 4.1e-77 292.0 241 58.5
Psat6g123280 Pisum sativum HOM05D005979 ORTHO05D007848 4.1e-77 292.0 244 60.7
Eucgr.K01638 Eucalyptus grandis HOM05D005979 ORTHO05D007848 5.3e-77 291.6 245 57.6
A05p38880 Brassica napus HOM05D005979 ORTHO05D007848 7.0e-77 291.2 242 58.3
COL.COLO4_00190 Corchorus olitorius HOM05D005979 ORTHO05D007848 9.1e-77 290.8 241 58.9
Medtr0004s0600 Medicago truncatula HOM05D005979 ORTHO05D007848 1.2e-76 290.4 244 59.8
SGA_v2.0_scaffold32G13036 Striga asiatica HOM05D005979 ORTHO05D007848 1.2e-76 290.4 275 54.5
HPP92_006880 Vanilla planifolia HOM05D005979 ORTHO05D007848 1.2e-76 290.4 243 57.2
TPR.G19644 Trifolium pratense HOM05D005979 ORTHO05D007848 1.6e-76 290.0 244 59.4
Ca_23806_v3 Cicer arietinum L. HOM05D005979 ORTHO05D007848 2.7e-76 289.3 244 58.2
QL07p008776 Quercus lobata HOM05D005979 ORTHO05D007848 5.9e-76 288.1 257 54.9
DCAR_001099 Daucus carota HOM05D005979 ORTHO05D007848 1.0e-75 287.3 239 56.1
CDE06G1795 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 1.3e-75 287.0 243 56.4
Phvul.002G285700 Phaseolus vulgaris HOM05D005979 ORTHO05D007848 1.3e-75 287.0 244 55.7
HPP92_006862 Vanilla planifolia HOM05D005979 ORTHO05D007848 1.3e-75 287.0 243 56.8
VMungo0251G0166 Vigna mungo HOM05D005979 ORTHO05D007848 5.0e-75 285.0 244 56.6
arahy.Tifrunner.gnm1.ann1.Y5SS6T Arachis hypogaea HOM05D005979 ORTHO05D007848 3.2e-74 282.3 224 62.5
Glyma.05G203800 Glycine max HOM05D005979 ORTHO05D007848 9.4e-74 280.8 238 56.7
ATR1134G092 Amborella trichopoda HOM05D005979 ORTHO05D007848 4.7e-73 278.5 243 56.8
MELO3C019044.2 Cucumis melo HOM05D005979 ORTHO05D007848 8.0e-73 277.7 230 59.6
Atru.chr1.1490 Acer truncatum HOM05D005979 ORTHO05D007848 1.5e-71 273.5 224 58.9
SalBow6G2287 Salvia bowleyana HOM05D005979 ORTHO05D007848 8.3e-70 267.7 327 46.2
Nitab4.5_0003715g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 2.9e-67 259.2 211 61.6
Haze_19714 Corylus avellana HOM05D005979 ORTHO05D007848 4.7e-65 251.9 214 56.1
PSO170G5780 Papaver somniferum HOM05D005979 ORTHO05D007848 6.1e-65 251.5 210 56.7
Os04g0692100 Oryza sativa ssp. japonica HOM05D005979 ORTHO05D007848 9.8e-63 244.2 245 51.4
Nitab4.5_0001180g0050 Nicotiana tabacum HOM05D005979 ORTHO05D007848 3.5e-60 235.7 300 45.0
Zm00001eb076570 Zea mays HOM05D005979 ORTHO05D007848 1.5e-58 230.3 278 44.6
Prupe.1G158700 Prunus persica HOM05D005979 ORTHO05D007848 5.6e-58 228.4 205 56.1
COL.COLO4_36506 Corchorus olitorius HOM05D005979 ORTHO05D007848 4.7e-57 225.3 204 53.9
Gorai.012G115900 Gossypium raimondii HOM05D005979 ORTHO05D007848 6.1e-57 224.9 205 54.1
Mapoly0016s0206 Marchantia polymorpha HOM05D005979 ORTHO05D007848 2.0e-55 219.9 252 44.4
Lj2A41G64 Lonicera japonica HOM05D005979 ORTHO05D007848 4.6e-52 208.8 222 50.5
Pp3c13_18250 Physcomitrium patens HOM05D005979 ORTHO05D007848 2.3e-51 206.5 250 42.4
Sabra06G0028100 Salix brachista HOM05D005979 ORTHO05D007848 7.5e-47 191.4 107 75.7
AagrBONN_evm.TU.Sc2ySwM_228.4763 Anthoceros agrestis HOM05D005979 ORTHO05D007848 9.2e-45 184.5 316 35.8
CBR_g30186 Chara braunii HOM05D005979 ORTHO05D007848 1.6e-44 183.7 260 38.5
Cre15.g636300 Chlamydomonas reinhardtii HOM05D005979 ORTHO05D007848 8.3e-38 161.4 269 36.8
Peaxi162Scf00171g00620 Petunia axillaris HOM05D005979 ORTHO05D007848 5.4e-37 158.7 338 31.4
Nitab4.5_0005200g0030 Nicotiana tabacum HOM05D005979 ORTHO05D007848 3.5e-36 156.0 83 77.1
Nitab4.5_0005200g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 1.5e-34 150.6 144 56.9
MCO14G471 Micromonas commoda HOM05D005979 ORTHO05D007848 1.2e-31 141.0 267 34.8
PRCOL_00000740 Prasinoderma coloniale HOM05D005979 ORTHO05D007848 2.0e-31 140.2 237 36.3
COL.COLO4_00246 Corchorus olitorius HOM05D005979 ORTHO05D007848 6.0e-28 128.6 85 70.6
Gohir.A04G092832 Gossypium hirsutum HOM05D005979 ORTHO05D007848 2.1e-25 120.2 85 68.2
FAN03G2583 Fragaria x ananassa HOM05D005979 ORTHO05D007848 9.0e-24 114.8 83 68.7
FAN08G3312 Fragaria x ananassa HOM05D005979 ORTHO05D007848 9.0e-24 114.8 83 68.7
FAN25G1846 Fragaria x ananassa HOM05D005979 ORTHO05D007848 1.9e-21 107.1 75 70.7
SEGI_39367 Sequoiadendron giganteum HOM05D005979 ORTHO05D007848 5.4e-21 105.5 59 72.9
BcaC09g48108 Brassica carinata HOM05D005979 ORTHO05D007848 4.6e-20 102.4 114 45.6
Glyma.08G011202 Glycine max HOM05D005979 ORTHO05D007848 1.4e-13 80.9 60 58.3
BraA01t04540Z Brassica rapa HOM05D005979 ORTHO05D007848 3.5e-12 76.3 51 62.7
A01p41070 Brassica napus HOM05D005979 ORTHO05D007848 1.8e-11 73.9 51 60.8
BNapus_Darmor_BZH_scaffold_78p00640 Brassica napus HOM05D005979 ORTHO05D007848 1.8e-11 73.9 51 60.8
CBR_g27740 Chara braunii HOM05D000738 ORTHO05D000675 3.0e-11 73.2 73 43.8
BolC1t05773H Brassica oleracea HOM05D005979 ORTHO05D007848 1.4e-08 64.3 43 60.5
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 3.4e-07 59.7 94 38.3
Pp3c13_4420 Physcomitrium patens HOM05D005625 ORTHO05D007564 4.5e-07 59.3 77 40.3
Cfa025444 Carpinus fangiana HOM05D005979 ORTHO05D122864 5.8e-07 58.9 76 39.5
PRCOL_00006618 Prasinoderma coloniale HOM05D000738 ORTHO05D000675 5.8e-07 58.9 91 35.2
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 1.3e-06 57.8 60 46.7
BcaC09g47773 Brassica carinata HOM05D005979 ORTHO05D007848 1.3e-06 57.8 38 60.5
DCAR_006209 Daucus carota HOM05D005625 ORTHO05D007564 1.3e-06 57.8 78 44.9
HanXRQChr11g0326321 Helianthus annuus HOM05D005625 ORTHO05D007564 2.2e-06 57.0 76 39.5
Solyc11g042470.1 Solanum lycopersicum HOM05D005625 ORTHO05D007564 2.9e-06 56.6 67 49.3
TAR381G1540 Trochodendron aralioides HOM05D005625 ORTHO05D007564 3.8e-06 56.2 73 39.7
PGR044G1301 Punica granatum HOM05D005625 ORTHO05D007564 4.9e-06 55.8 81 38.3
PGSC0003DMG400019987 Solanum tuberosum HOM05D005625 ORTHO05D007564 4.9e-06 55.8 67 49.3
Mapoly0057s0080 Marchantia polymorpha HOM05D005625 ORTHO05D007564 6.4e-06 55.5 58 44.8
arahy.Tifrunner.gnm1.ann1.0NEN23 Arachis hypogaea HOM05D005625 ORTHO05D007564 8.4e-06 55.1 80 41.2
arahy.Tifrunner.gnm1.ann1.U40EKY Arachis hypogaea HOM05D005625 ORTHO05D007564 8.4e-06 55.1 80 41.2
MBI03_g28415_MAGBIO Magnolia biondii HOM05D005625 ORTHO05D007564 8.4e-06 55.1 87 36.8
Manes.18G118300 Manihot esculenta HOM05D005625 ORTHO05D007564 8.4e-06 55.1 75 41.3
SMO145G0237 Selaginella moellendorffii HOM05D005625 ORTHO05D007564 8.4e-06 55.1 80 36.2


User provided reference genes

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