Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62026733 Chenopodium quinoa HOM05D003914 ORTHO05D001189 1.3e-293 1012.3 489 100.0
EL10Ac3g05211 Beta vulgaris HOM05D003914 ORTHO05D001189 3.7e-221 771.5 489 79.3
Ah.02g130190 Amaranthus hybridus HOM05D003914 ORTHO05D001189 1.2e-211 740.0 516 73.3
AUR62019191 Chenopodium quinoa HOM05D003914 ORTHO05D001189 3.1e-207 725.3 469 76.8
Sc26g0002670 Simmondsia chinensis HOM05D003914 ORTHO05D001189 1.0e-189 667.2 489 67.3
Dinv21395 Davidia involucrata HOM05D003914 ORTHO05D001189 7.9e-179 630.9 487 64.9
CSS0032385 Camellia sinensis var. sinensis HOM05D003914 ORTHO05D001189 6.7e-178 627.9 488 63.9
QL05p034889 Quercus lobata HOM05D003914 ORTHO05D001189 1.8e-175 619.8 488 61.9
Lj5A78T80 Lonicera japonica HOM05D003914 ORTHO05D001189 9.0e-175 617.5 483 62.9
vmacro19039 Vaccinium macrocarpon HOM05D003914 ORTHO05D001189 1.2e-174 617.1 488 61.7
MD08G1215300 Malus domestica HOM05D003914 ORTHO05D001189 2.0e-174 616.3 489 61.8
RcHm_v2.0_Chr1g0336931 Rosa chinensis HOM05D003914 ORTHO05D001189 2.6e-174 615.9 489 62.4
Prupe.2G099100 Prunus persica HOM05D003914 ORTHO05D001189 2.2e-173 612.8 489 61.8
Haze_16646 Corylus avellana HOM05D003914 ORTHO05D001189 1.4e-172 610.1 536 58.2
Rhsim08G0208100 Rhododendron simsii HOM05D003914 ORTHO05D001189 1.2e-171 607.1 488 61.7
Cfa001895 Carpinus fangiana HOM05D003914 ORTHO05D001189 2.1e-171 606.3 489 61.6
MD15G1399200 Malus domestica HOM05D003914 ORTHO05D001189 2.7e-171 605.9 489 60.5
FvH4_5g27200 Fragaria vesca HOM05D003914 ORTHO05D001189 1.4e-170 603.6 489 61.1
CANSAT56G3222 Cannabis sativa HOM05D003914 ORTHO05D001189 3.0e-170 602.4 485 60.6
FAN18G0022 Fragaria x ananassa HOM05D003914 ORTHO05D001189 5.1e-170 601.7 489 60.9
FAN13G1654 Fragaria x ananassa HOM05D003914 ORTHO05D001189 1.1e-169 600.5 489 60.9
Duzib235G0729 Durio zibethinus HOM05D003914 ORTHO05D001189 2.5e-169 599.4 484 59.7
FAN08G1096 Fragaria x ananassa HOM05D003914 ORTHO05D001189 6.3e-168 594.7 489 60.5
Oeu010367.1 Olea europaea HOM05D003914 ORTHO05D001189 6.3e-168 594.7 486 60.7
Nn5g28958 Nelumbo nucifera HOM05D003914 ORTHO05D001189 1.4e-167 593.6 488 58.4
Manes.04G104700 Manihot esculenta HOM05D003914 ORTHO05D001189 4.1e-167 592.0 484 60.1
Ciclev10024784m.g Citrus clementina HOM05D003914 ORTHO05D001189 5.3e-167 591.7 488 58.4
TWI12G1414 Tripterygium wilfordii HOM05D003914 ORTHO05D001189 9.1e-167 590.9 488 60.0
Gohir.A10G069101 Gossypium hirsutum HOM05D003914 ORTHO05D001189 2.6e-166 589.3 488 59.0
TAR625G0765 Trochodendron aralioides HOM05D003914 ORTHO05D001189 2.6e-166 589.3 488 59.2
Gohir.D10G082300 Gossypium hirsutum HOM05D003914 ORTHO05D001189 3.4e-166 589.0 488 59.0
Cc04_g04890 Coffea canephora HOM05D003914 ORTHO05D001189 4.5e-166 588.6 483 60.0
Gorai.011G089200 Gossypium raimondii HOM05D003914 ORTHO05D001189 5.9e-166 588.2 488 59.0
PGSC0003DMG400014195 Solanum tuberosum HOM05D003914 ORTHO05D001189 5.9e-166 588.2 489 58.9
TAR381G0623 Trochodendron aralioides HOM05D003914 ORTHO05D001189 1.3e-165 587.0 488 60.5
Thecc.06G038600 Theobroma cacao HOM05D003914 ORTHO05D001189 1.7e-165 586.6 488 58.4
CAN.G407.47 Capsicum annuum HOM05D003914 ORTHO05D001189 2.2e-165 586.3 489 58.1
Potri.003G180100 Populus trichocarpa HOM05D003914 ORTHO05D001189 5.0e-165 585.1 486 58.4
SGA_v2.0_scaffold5G02755 Striga asiatica HOM05D003914 ORTHO05D001189 6.5e-165 584.7 483 59.4
Solyc03g117120.4 Solanum lycopersicum HOM05D003914 ORTHO05D001189 2.5e-164 582.8 489 58.5
COL.COLO4_26660 Corchorus olitorius HOM05D003914 ORTHO05D001189 7.2e-164 581.3 488 59.2
Sopen03g036030 Solanum pennellii HOM05D003914 ORTHO05D001189 9.4e-164 580.9 489 58.3
Migut.I00709 Erythranthe guttata HOM05D003914 ORTHO05D001189 1.2e-163 580.5 483 59.2
Phvul.008G287100 Phaseolus vulgaris HOM05D003914 ORTHO05D001189 6.7e-162 574.7 488 56.8
Aqoxy7G03430 Aquilegia oxysepala HOM05D003914 ORTHO05D001189 1.3e-160 570.5 489 58.1
arahy.Tifrunner.gnm1.ann1.39XWEQ Arachis hypogaea HOM05D003914 ORTHO05D001189 1.4e-159 567.0 488 55.5
Glyma.14G005800 Glycine max HOM05D003914 ORTHO05D001189 1.4e-159 567.0 488 55.9
arahy.Tifrunner.gnm1.ann1.E1J0LN Arachis hypogaea HOM05D003914 ORTHO05D001189 1.8e-159 566.6 488 55.3
DCAR_025582 Daucus carota HOM05D003914 ORTHO05D001189 2.4e-159 566.2 488 58.4
Medtr5g097890 Medicago truncatula HOM05D003914 ORTHO05D001189 3.1e-159 565.8 488 55.9
Eucgr.F03948 Eucalyptus grandis HOM05D003914 ORTHO05D001189 9.1e-159 564.3 489 56.4
THA.LOC104812443 Tarenaya hassleriana HOM05D003914 ORTHO05D001189 2.0e-158 563.1 484 56.4
Ca_06471_v3 Cicer arietinum L. HOM05D003914 ORTHO05D001189 5.9e-158 561.6 499 55.5
TPR.G15053 Trifolium pratense HOM05D003914 ORTHO05D001189 1.3e-157 560.5 484 55.6
LjContig00081g0020682 Lotus japonicus HOM05D003914 ORTHO05D001189 1.7e-157 560.1 484 56.2
Peaxi162Scf00332g00329 Petunia axillaris HOM05D003914 ORTHO05D001189 2.2e-157 559.7 489 56.6
VMungo0647G1679 Vigna mungo HOM05D003914 ORTHO05D001189 3.8e-157 558.9 488 54.9
ECA247G0583 Erigeron canadensis HOM05D003914 ORTHO05D001189 5.0e-157 558.5 488 57.2
ClCG02G022560 Citrullus lanatus HOM05D003914 ORTHO05D001189 3.2e-156 555.8 488 58.0
Lalb_Chr04g0247201 Lupinus albus HOM05D003914 ORTHO05D001189 5.5e-156 555.1 489 55.0
PGR102G3368 Punica granatum HOM05D003914 ORTHO05D001189 5.5e-156 555.1 488 55.5
SalBow7G0967 Salvia bowleyana HOM05D003914 ORTHO05D001189 9.4e-156 554.3 483 57.3
PSO210G6726 Papaver somniferum HOM05D003914 ORTHO05D001189 1.6e-155 553.5 487 57.1
SalBow5G0986 Salvia bowleyana HOM05D003914 ORTHO05D001189 6.1e-155 551.6 483 57.1
SalBow5G5560 Salvia bowleyana HOM05D003914 ORTHO05D001189 6.1e-155 551.6 483 57.1
AT1G80680 Arabidopsis thaliana HOM05D003914 ORTHO05D001189 1.0e-154 550.8 485 56.1
PSO447G0077 Papaver somniferum HOM05D003914 ORTHO05D001189 1.1e-153 547.4 487 56.9
BraA02t07320Z Brassica rapa HOM05D003914 ORTHO05D001189 1.5e-153 547.0 485 56.3
AL2G40760 Arabidopsis lyrata HOM05D003914 ORTHO05D001189 2.0e-153 546.6 486 56.0
MELO3C014532.2 Cucumis melo HOM05D003914 ORTHO05D001189 4.4e-153 545.4 488 57.0
Thhalv10018057m.g Eutrema salsugineum HOM05D003914 ORTHO05D001189 7.5e-153 544.7 485 55.9
Carub.0002s2688 Capsella rubella HOM05D003914 ORTHO05D001189 2.2e-152 543.1 484 55.8
BcaB05g25235 Brassica carinata HOM05D003914 ORTHO05D001189 6.3e-152 541.6 485 56.1
CsaV3_6G038690 Cucumis sativus L. HOM05D005551 ORTHO05D001189 1.1e-151 540.8 482 57.3
A02p23230 Brassica napus HOM05D003914 ORTHO05D001189 1.4e-151 540.4 485 56.1
Lsat_1_v5_gn_1_32000 Lactuca sativa HOM05D003914 ORTHO05D001189 1.8e-151 540.0 489 55.8
CiPaw.01G252800 Carya illinoinensis HOM05D003914 ORTHO05D001189 3.5e-150 535.8 489 56.2
BcaB02g07257 Brassica carinata HOM05D003914 ORTHO05D001189 1.0e-149 534.3 485 54.8
A07p26790 Brassica napus HOM05D003914 ORTHO05D001189 2.2e-149 533.1 485 55.1
BraA07t30322Z Brassica rapa HOM05D003914 ORTHO05D001189 2.2e-149 533.1 485 55.1
SalBow5G1255 Salvia bowleyana HOM05D003914 ORTHO05D001189 3.8e-149 532.3 475 56.2
Sp5g35080 Schrenkiella parvula HOM05D003914 ORTHO05D001189 3.8e-149 532.3 484 55.2
ATR0048G029 Amborella trichopoda HOM05D003914 ORTHO05D001189 1.9e-148 530.0 489 54.4
Nitab4.5_0011117g0010 Nicotiana tabacum HOM05D003914 ORTHO05D001189 3.2e-148 529.3 489 54.2
BcaC08g45332 Brassica carinata HOM05D003914 ORTHO05D001189 5.5e-148 528.5 485 54.4
C06p29420 Brassica napus HOM05D003914 ORTHO05D001189 2.1e-147 526.6 485 54.2
BolC6t38107H Brassica oleracea HOM05D003914 ORTHO05D001189 2.1e-147 526.6 485 54.2
Sed0002099 Sechium edule HOM05D003914 ORTHO05D001189 3.6e-147 525.8 488 54.9
HanXRQChr03g0080251 Helianthus annuus HOM05D003914 ORTHO05D001189 4.7e-147 525.4 491 54.6
Aa31LG7G450 Aethionema arabicum HOM05D003914 ORTHO05D001189 5.7e-145 518.5 486 52.7
C02p36990 Brassica napus HOM05D003914 ORTHO05D001189 4.8e-144 515.4 465 55.5
AUR62013548 Chenopodium quinoa HOM05D003914 ORTHO05D001189 4.8e-144 515.4 369 71.8
Nitab4.5_0001454g0080 Nicotiana tabacum HOM05D003914 ORTHO05D001189 4.5e-142 508.8 518 50.8
Os03g0172000 Oryza sativa ssp. japonica HOM05D003914 ORTHO05D001189 7.7e-142 508.1 483 50.1
CDE05G2347 Ceratophyllum demersum HOM05D003914 ORTHO05D001189 1.5e-137 493.8 499 49.9
Zm00001eb402160 Zea mays HOM05D003914 ORTHO05D001189 4.9e-136 488.8 485 48.7
SEGI_18885 Sequoiadendron giganteum HOM05D003914 ORTHO05D001189 3.1e-135 486.1 492 49.6
HanXRQChr08g0217431 Helianthus annuus HOM05D003914 ORTHO05D001189 8.3e-128 461.5 426 55.2
HanXRQChr02g0034961 Helianthus annuus HOM05D003914 ORTHO05D001189 1.0e-125 454.5 426 54.9
MBI05_g01294_MAGBIO Magnolia biondii HOM05D003914 ORTHO05D001189 5.0e-125 452.2 381 56.7
CARHR073840 Cardamine hirsuta HOM05D003914 ORTHO05D001189 2.6e-121 439.9 390 55.1
HPP92_024673 Vanilla planifolia HOM05D003914 ORTHO05D001189 1.7e-112 410.6 485 43.5
Psat2g003960 Pisum sativum HOM05D003914 ORTHO05D001189 3.7e-112 409.5 284 63.0
arahy.Tifrunner.gnm1.ann1.448EM4 Arachis hypogaea HOM05D003914 ORTHO05D001189 6.4e-112 408.7 373 54.2
Cpa.g.sc2.93 Carica papaya HOM05D003914 ORTHO05D001189 7.3e-108 395.2 267 66.3
Actinidia18235 Actinidia chinensis HOM05D003914 ORTHO05D001189 1.8e-106 390.6 248 72.2
Pp3c26_7720 Physcomitrium patens HOM05D003914 ORTHO05D001189 3.7e-104 382.9 484 41.7
Mapoly0028s0046 Marchantia polymorpha HOM05D003914 ORTHO05D001189 4.1e-103 379.4 491 39.3
SMO367G0807 Selaginella moellendorffii HOM05D003914 ORTHO05D001189 2.1e-99 367.1 488 41.0
unitig_61.g26229 Utricularia gibba HOM05D003914 ORTHO05D001189 6.8e-98 362.1 379 51.2
Zm00001eb242170 Zea mays HOM05D003914 ORTHO05D001189 1.2e-94 351.3 428 43.5
MD16G1257100 Malus domestica HOM05D003914 ORTHO05D001189 1.3e-93 347.8 242 65.7
AagrBONN_evm.TU.Sc2ySwM_340.72 Anthoceros agrestis HOM05D003914 ORTHO05D001189 4.8e-91 339.3 494 38.5
Oeu008404.1 Olea europaea HOM05D003914 ORTHO05D001189 3.8e-88 329.7 241 65.6
SalBow5G5111 Salvia bowleyana HOM05D003914 ORTHO05D001189 2.3e-85 320.5 287 54.7
Actinidia25447 Actinidia chinensis HOM05D003914 ORTHO05D001189 1.1e-82 311.6 293 55.6
arahy.Tifrunner.gnm1.ann1.AIB04B Arachis hypogaea HOM05D003914 ORTHO05D001189 6.2e-75 285.8 414 39.4
GSVIVG01017553001 Vitis vinifera HOM05D003914 ORTHO05D001189 5.1e-69 266.2 258 55.0
ATR0564G275 Amborella trichopoda HOM05D003914 ORTHO05D001189 2.1e-67 260.8 242 51.7
Zm00001eb206280 Zea mays HOM05D003914 ORTHO05D001189 3.1e-66 256.9 267 45.3
CBR_g34675 Chara braunii HOM05D003914 ORTHO05D001189 9.7e-60 235.3 490 29.4
Actinidia28303 Actinidia chinensis HOM05D003914 ORTHO05D001189 1.0e-45 188.7 304 40.8
Zm00001eb072150 Zea mays HOM05D003914 ORTHO05D001189 1.1e-44 185.3 260 39.6
Zm00001eb037140 Zea mays HOM05D003914 ORTHO05D001189 3.3e-44 183.7 260 39.2
Zm00001eb104230 Zea mays HOM05D003914 ORTHO05D001189 4.4e-44 183.3 275 37.8
SHI11253 Sapria himalayana HOM05D003914 ORTHO05D001189 5.9e-41 172.9 151 58.3
HPP92_024664 Vanilla planifolia HOM05D003914 ORTHO05D001189 2.2e-40 171.0 130 56.9
arahy.Tifrunner.gnm1.ann1.W0G0JC Arachis hypogaea HOM05D000229 ORTHO05D001189 3.2e-39 167.2 227 39.2
Zm00001eb336550 Zea mays HOM05D003914 ORTHO05D001189 9.4e-39 165.6 248 38.3
Zm00001eb386800 Zea mays HOM05D003914 ORTHO05D001189 1.6e-38 164.9 104 68.3
Zm00001eb075600 Zea mays HOM05D003914 ORTHO05D001189 6.1e-38 162.9 248 37.9
Atru.chr10.2395 Acer truncatum HOM05D003914 ORTHO05D001189 4.8e-27 126.7 76 71.1
HanXRQChr02g0034921 Helianthus annuus HOM05D003914 ORTHO05D001189 6.3e-27 126.3 183 43.2
Atru.chr10.2396 Acer truncatum HOM05D003914 ORTHO05D001189 5.4e-26 123.2 97 62.9
Pp3c26_7670 Physcomitrium patens HOM05D003914 ORTHO05D001189 1.6e-25 121.7 145 42.8
Zm00001eb421450 Zea mays HOM05D003914 ORTHO05D001189 3.5e-25 120.6 154 44.8
Zm00001eb052930 Zea mays HOM05D003914 ORTHO05D006988 7.7e-25 119.4 137 47.4
Nn1g04288 Nelumbo nucifera HOM05D003914 ORTHO05D001189 2.2e-24 117.9 173 39.3
Zm00001eb059520 Zea mays HOM05D003914 ORTHO05D001189 2.2e-24 117.9 134 47.8
CARHR073830 Cardamine hirsuta HOM05D003914 ORTHO05D001189 5.5e-23 113.2 95 60.0
Zm00001eb236280 Zea mays HOM05D003914 ORTHO05D001189 1.2e-20 105.5 132 43.9
SalBow5G3025 Salvia bowleyana HOM05D003914 ORTHO05D001189 1.4e-18 98.6 105 49.5
unitig_61.g26230 Utricularia gibba HOM05D003914 ORTHO05D001189 1.4e-13 82.0 54 63.0
Zm00001eb154890 Zea mays HOM05D003914 ORTHO05D001189 8.9e-13 79.3 91 46.2
Zm00001eb386790 Zea mays HOM05D003914 ORTHO05D001189 4.4e-12 77.0 91 46.2
PRCOL_00003883 Prasinoderma coloniale HOM05D003914 ORTHO05D001189 1.6e-09 68.6 323 25.1
Cre02.g086887 Chlamydomonas reinhardtii HOM05D003914 ORTHO05D001189 2.5e-07 61.2 249 23.3
Nn1g04287 Nelumbo nucifera HOM05D003914 ORTHO05D001189 4.7e-06 57.0 41 63.4


User provided reference genes

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