Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62025581 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 2142.9 1078 100.0
EL10Ac7g18223 Beta vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1907.1 1079 88.2
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1857.4 996 94.5
Ah.15g094660 Amaranthus hybridus HOM05D004422 ORTHO05D007331 0.0e+00 1752.3 1228 74.9
Hund18610 Selenicereus undatus HOM05D004422 ORTHO05D007331 0.0e+00 1733.0 1079 80.8
GSVIVG01018288001 Vitis vinifera HOM05D004422 ORTHO05D007331 0.0e+00 1628.6 1084 75.2
CSS0020521 Camellia sinensis var. sinensis HOM05D004422 ORTHO05D007331 0.0e+00 1610.9 1085 74.5
QL10p000960 Quercus lobata HOM05D004422 ORTHO05D007331 0.0e+00 1595.5 1081 74.7
Sc12g0011040 Simmondsia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1593.9 979 81.0
Manes.05G055300 Manihot esculenta HOM05D004422 ORTHO05D007331 0.0e+00 1593.2 1078 74.6
Atru.chr5.121 Acer truncatum HOM05D004422 ORTHO05D007331 0.0e+00 1591.6 1085 73.9
Rhsim07G0036300 Rhododendron simsii HOM05D004422 ORTHO05D007331 0.0e+00 1590.5 1084 73.0
CiPaw.14G020100 Carya illinoinensis HOM05D004422 ORTHO05D007331 0.0e+00 1587.8 1081 73.8
Potri.014G049200 Populus trichocarpa HOM05D004422 ORTHO05D007331 0.0e+00 1580.5 1093 73.3
RcHm_v2.0_Chr1g0348021 Rosa chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1579.7 1084 73.5
Nn1g00835 Nelumbo nucifera HOM05D004422 ORTHO05D007331 0.0e+00 1572.8 1081 72.9
MD07G1109400 Malus domestica HOM05D004422 ORTHO05D007331 0.0e+00 1571.6 1089 72.6
Thecc.01G395500 Theobroma cacao HOM05D004422 ORTHO05D007331 0.0e+00 1571.2 1083 73.2
Aqoxy5G04133 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 0.0e+00 1570.8 1085 72.4
Gohir.D08G040000 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1565.8 1017 75.8
Gohir.A08G029300 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1562.0 1017 75.5
Gorai.004G038800 Gossypium raimondii HOM05D004422 ORTHO05D007331 0.0e+00 1559.7 1017 75.4
TWI59G1250 Tripterygium wilfordii HOM05D004422 ORTHO05D007331 0.0e+00 1558.9 1080 72.3
Dinv43612 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1553.5 1103 72.4
Actinidia18350 Actinidia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1553.1 1086 72.7
CANSAT25G3675 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1547.7 1083 71.7
Sabra14G0035000 Salix brachista HOM05D004422 ORTHO05D007331 0.0e+00 1547.7 1093 71.8
HanXRQChr16g0521111 Helianthus annuus HOM05D004422 ORTHO05D007331 0.0e+00 1546.6 1089 71.2
Lsat_1_v5_gn_4_39461 Lactuca sativa HOM05D004422 ORTHO05D007331 0.0e+00 1545.4 1096 69.9
CANSAT25G3884 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1544.3 1079 71.8
Migut.B01531 Erythranthe guttata HOM05D004422 ORTHO05D007331 0.0e+00 1540.8 1091 70.6
ECA234G0959 Erigeron canadensis HOM05D004422 ORTHO05D007331 0.0e+00 1538.9 1080 71.3
FAN03G1687 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1534.6 1081 72.3
Lj3g0007750 Lotus japonicus HOM05D004422 ORTHO05D007331 0.0e+00 1533.1 1085 71.6
MSTRG.20687 Avicennia marina HOM05D004422 ORTHO05D007331 0.0e+00 1530.0 1088 71.0
Ca_25801_v3 Cicer arietinum L. HOM05D004422 ORTHO05D007331 0.0e+00 1528.5 1075 71.4
FAN01G0685 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1528.5 1078 71.7
Haze_02852 Corylus avellana HOM05D004422 ORTHO05D007331 0.0e+00 1524.6 1130 69.8
PSO782G5506 Papaver somniferum HOM05D004422 ORTHO05D007331 0.0e+00 1522.7 1084 70.5
THA.LOC104816999 Tarenaya hassleriana HOM05D004422 ORTHO05D007331 0.0e+00 1521.1 1081 70.4
Eucgr.H04784 Eucalyptus grandis HOM05D004422 ORTHO05D007331 0.0e+00 1516.5 1092 71.2
FAN06G3830 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1516.1 1078 71.3
Lalb_Chr07g0195401 Lupinus albus HOM05D004422 ORTHO05D007331 0.0e+00 1513.4 1078 71.1
Medtr8g006955 Medicago truncatula HOM05D004422 ORTHO05D007331 0.0e+00 1508.4 1089 70.5
MELO3C022290.2 Cucumis melo HOM05D004422 ORTHO05D007331 0.0e+00 1508.0 1088 69.2
Thhalv10018047m.g Eutrema salsugineum HOM05D004422 ORTHO05D007331 0.0e+00 1507.7 1081 70.5
Psat4g224760 Pisum sativum HOM05D004422 ORTHO05D007331 0.0e+00 1507.7 1005 74.1
CsaV3_6G008710 Cucumis sativus L. HOM05D004422 ORTHO05D007331 0.0e+00 1507.3 1088 69.2
AT3G48110 Arabidopsis thaliana HOM05D004422 ORTHO05D007331 0.0e+00 1506.9 1075 69.6
AL5G27440 Arabidopsis lyrata HOM05D004422 ORTHO05D007331 0.0e+00 1503.8 1075 69.5
Sopen01g035990 Solanum pennellii HOM05D004422 ORTHO05D007331 0.0e+00 1503.8 1078 70.3
Solyc01g090200.4 Solanum lycopersicum HOM05D004422 ORTHO05D007331 0.0e+00 1502.3 1078 70.4
Lj7C547G5 Lonicera japonica HOM05D004422 ORTHO05D007331 0.0e+00 1488.0 1153 67.0
Sed0020409 Sechium edule HOM05D004422 ORTHO05D007331 0.0e+00 1487.6 1082 68.3
BraA07t30542Z Brassica rapa HOM05D004422 ORTHO05D007331 0.0e+00 1479.9 1076 69.3
A07p29020 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1478.0 1076 69.3
Cc02_g25150 Coffea canephora HOM05D004422 ORTHO05D007331 0.0e+00 1474.9 1123 68.2
SGA_v2.0_scaffold52G19227 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1471.8 1169 65.2
BcaB02g07011 Brassica carinata HOM05D004422 ORTHO05D007331 0.0e+00 1469.5 1096 68.2
C06p32790 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1467.2 1078 69.3
BolC6t38401H Brassica oleracea HOM05D004422 ORTHO05D007331 0.0e+00 1464.5 1079 69.3
ClCG06G002430 Citrullus lanatus HOM05D004422 ORTHO05D007331 0.0e+00 1463.7 1111 67.4
Dinv44059 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1455.7 955 76.8
Prupe.2G132400 Prunus persica HOM05D004422 ORTHO05D007331 0.0e+00 1451.0 956 75.5
Oeu000053.1 Olea europaea HOM05D004422 ORTHO05D007331 0.0e+00 1444.9 973 74.2
Duzib268G0035 Durio zibethinus HOM05D004422 ORTHO05D007331 0.0e+00 1432.5 1093 67.9
Cfa011065 Carpinus fangiana HOM05D004422 ORTHO05D007331 0.0e+00 1424.1 1081 68.1
arahy.Tifrunner.gnm1.ann1.NVW2FV Arachis hypogaea HOM05D004422 ORTHO05D007331 0.0e+00 1416.4 1006 70.6
Phvul.010G049401 Phaseolus vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1413.3 955 73.8
Zm00001eb379480 Zea mays HOM05D004422 ORTHO05D007331 0.0e+00 1412.5 1051 67.6
Os06g0103600 Oryza sativa ssp. japonica HOM05D004422 ORTHO05D007331 0.0e+00 1409.4 1016 69.0
SGA_v2.0_scaffold340G49325 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1409.4 1103 65.7
Ciclev10018701m.g Citrus clementina HOM05D004422 ORTHO05D007331 0.0e+00 1399.0 1079 66.6
ATR0057G028 Amborella trichopoda HOM05D004422 ORTHO05D007331 0.0e+00 1392.5 1034 68.2
DCAR_029470 Daucus carota HOM05D004422 ORTHO05D007331 0.0e+00 1390.6 986 70.0
HPP92_002531 Vanilla planifolia HOM05D004422 ORTHO05D007331 0.0e+00 1334.3 986 66.2
Nitab4.5_0000920g0050 Nicotiana tabacum HOM05D004422 ORTHO05D007331 0.0e+00 1283.9 1207 58.3
FvH4_7g10270 Fragaria vesca HOM05D004422 ORTHO05D007331 0.0e+00 1276.5 876 72.8
Sp5g30300 Schrenkiella parvula HOM05D004422 ORTHO05D007331 0.0e+00 1267.7 883 71.3
Aa31LG1G11470 Aethionema arabicum HOM05D004422 ORTHO05D007331 0.0e+00 1258.8 1097 61.5
Peaxi162Scf00475g00041 Petunia axillaris HOM05D004422 ORTHO05D007331 0.0e+00 1246.5 1128 59.0
Mapoly0186s0003 Marchantia polymorpha HOM05D004422 ORTHO05D007331 0.0e+00 1239.9 1011 61.5
AagrBONN_evm.TU.Sc2ySwM_117.3818 Anthoceros agrestis HOM05D004422 ORTHO05D007331 0.0e+00 1238.8 1034 60.5
Pp3c1_42870 Physcomitrium patens HOM05D004422 ORTHO05D007331 0.0e+00 1232.6 1081 58.7
SalBow5G1783 Salvia bowleyana HOM05D004422 ORTHO05D007331 0.0e+00 1227.2 976 66.2
CBR_g19146 Chara braunii HOM05D004422 ORTHO05D007331 0.0e+00 1149.4 1012 56.0
unitig_0.g1355 Utricularia gibba HOM05D004422 ORTHO05D007331 0.0e+00 1086.6 1144 53.1
PRCOL_00000491 Prasinoderma coloniale HOM05D004422 ORTHO05D007331 1.5e-311 1073.2 1020 54.4
TAR375G0830 Trochodendron aralioides HOM05D004422 ORTHO05D007331 2.3e-295 1019.2 690 73.2
Nitab4.5_0002685g0030 Nicotiana tabacum HOM05D004422 ORTHO05D007331 3.6e-293 1011.9 1109 52.5
MCO03G257 Micromonas commoda HOM05D004422 ORTHO05D007331 1.9e-286 989.6 1021 50.6
Cre10.g433000 Chlamydomonas reinhardtii HOM05D004422 ORTHO05D007331 1.8e-284 983.0 1047 50.1
CARHR156840 Cardamine hirsuta HOM05D004422 ORTHO05D007331 3.2e-281 972.2 759 64.4
TPR.G33119 Trifolium pratense HOM05D004422 ORTHO05D007331 1.9e-278 963.0 1005 52.6
Carub.0005s1421 Capsella rubella HOM05D004422 ORTHO05D007331 5.7e-254 881.7 622 69.6
Glyma.03G110500 Glycine max HOM05D004422 ORTHO05D007331 7.7e-251 871.3 603 72.5
CAN.G1473.2 Capsicum annuum HOM05D004422 ORTHO05D007331 2.3e-210 736.9 584 63.4
arahy.Tifrunner.gnm1.ann1.Q83G00 Arachis hypogaea HOM05D004422 ORTHO05D007331 2.9e-205 719.9 504 72.4
QL09p024682 Quercus lobata HOM05D004422 ORTHO05D007331 2.3e-194 683.7 518 69.3
Cpa.g.sc22.56 Carica papaya HOM05D004422 ORTHO05D007331 4.9e-189 666.0 471 69.2
QL04p030045 Quercus lobata HOM05D004422 ORTHO05D007331 3.5e-187 659.8 621 58.8
COL.COLO4_07156 Corchorus olitorius HOM05D004422 ORTHO05D007331 2.1e-176 624.0 825 46.5
CDE02G3124 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 6.6e-170 602.4 459 66.9
vmacro13500 Vaccinium macrocarpon HOM05D004422 ORTHO05D007331 5.3e-167 592.8 633 53.2
Carub.0005s1422 Capsella rubella HOM05D004422 ORTHO05D007331 5.8e-166 589.3 410 72.7
Cpa.g.sc22.52 Carica papaya HOM05D004422 ORTHO05D007331 9.9e-166 588.6 387 76.2
VMungo0331G0292 Vigna mungo HOM05D000002 ORTHO05D000001 2.1e-152 544.3 404 66.3
VMungo0331G1046 Vigna mungo HOM05D004422 ORTHO05D007331 4.6e-147 526.6 346 77.7
CAN.G1497.17 Capsicum annuum HOM05D004422 ORTHO05D007331 6.7e-130 469.5 337 72.7
TPR.G13525 Trifolium pratense HOM05D004422 ORTHO05D007331 2.2e-128 464.5 330 70.6
TAR375G0769 Trochodendron aralioides HOM05D004422 ORTHO05D007331 1.7e-125 454.9 285 78.9
FAN10G2373 Fragaria x ananassa HOM05D004422 ORTHO05D007331 1.1e-124 452.2 309 75.1
Glyma.03G111000 Glycine max HOM05D004422 ORTHO05D007331 1.4e-122 445.3 391 61.6
COL.COLO4_30046 Corchorus olitorius HOM05D004422 ORTHO05D007331 4.2e-108 397.1 357 62.5
CDE09G1442 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 1.8e-106 391.7 302 63.6
SEGI_38441 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 2.5e-100 371.3 250 74.0
COL.COLO4_07155 Corchorus olitorius HOM05D004422 ORTHO05D007331 9.8e-89 332.8 241 68.0
CDE09G1306 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 1.1e-82 312.8 224 71.0
Haze_27357 Corylus avellana HOM05D004422 ORTHO05D007331 1.2e-81 309.3 300 49.7
Actinidia32507 Actinidia chinensis HOM05D004422 ORTHO05D007331 1.2e-59 236.1 180 71.1
HanXRQChr07g0189481 Helianthus annuus HOM05D004422 ORTHO05D021544 8.7e-53 213.4 182 61.0
QL04p030068 Quercus lobata HOM05D004422 ORTHO05D007331 2.5e-52 211.8 187 62.6
SGA_v2.0_scaffold52G19231 Striga asiatica HOM05D004422 ORTHO05D030592 4.9e-48 197.6 150 66.7
SEGI_08386 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 2.0e-41 175.6 150 58.7
SEGI_01066 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 2.8e-35 155.2 124 61.3
SEGI_36766 Sequoiadendron giganteum HOM05D004422 ORTHO05D013213 1.1e-34 153.3 125 56.0
SEGI_38096 Sequoiadendron giganteum HOM05D004422 ORTHO05D030592 1.5e-33 149.4 113 64.6
Lsat_1_v5_gn_5_158961 Lactuca sativa HOM05D004422 ORTHO05D007331 1.7e-32 146.0 100 67.0
HanXRQChr09g0251021 Helianthus annuus HOM05D004422 ORTHO05D021544 2.2e-32 145.6 203 43.3
SGA_v2.0_scaffold902G53711 Striga asiatica HOM05D004422 ORTHO05D030592 1.2e-30 139.8 113 63.7
Psat7g148920 Pisum sativum HOM05D004422 ORTHO05D013213 5.1e-29 134.4 112 58.0
HanXRQChr09g0251011 Helianthus annuus HOM05D004422 ORTHO05D021544 6.7e-29 134.0 113 63.7
arahy.Tifrunner.gnm1.ann1.Y7Q0ZL Arachis hypogaea HOM05D004422 ORTHO05D013213 8.7e-29 133.7 89 68.5
COL.COLO4_33296 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.9e-28 132.5 112 58.9
FAN06G1066 Fragaria x ananassa HOM05D004422 ORTHO05D007331 2.2e-27 129.0 123 61.0
FAN10G4150 Fragaria x ananassa HOM05D004422 ORTHO05D007331 2.2e-27 129.0 123 61.0
HanXRQChr16g0520031 Helianthus annuus HOM05D004422 ORTHO05D021544 2.4e-26 125.6 99 62.6
Aqoxy1G01621 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 1.2e-25 123.2 90 65.6
Cpa.g.sc22.55 Carica papaya HOM05D004422 ORTHO05D013213 1.2e-22 113.2 75 69.3
arahy.Tifrunner.gnm1.ann1.SPAE12 Arachis hypogaea HOM05D004422 ORTHO05D021544 7.4e-20 104.0 92 60.9
Psat7g007000 Pisum sativum HOM05D004422 ORTHO05D013213 4.5e-17 94.7 132 41.7
COL.COLO4_35716 Corchorus olitorius HOM05D004422 ORTHO05D157279 1.7e-16 92.8 205 35.1
SEGI_14209 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 1.7e-16 92.8 69 63.8
COL.COLO4_30045 Corchorus olitorius HOM05D004422 ORTHO05D007331 3.9e-13 81.6 69 62.3
Lsat_1_v5_gn_4_171980 Lactuca sativa HOM05D004422 ORTHO05D002867 2.8e-11 75.5 54 63.0
Thecc.01G108300 Theobroma cacao HOM05D004422 ORTHO05D408993 2.8e-11 75.5 90 50.0
TPR.G34724 Trifolium pratense HOM05D004422 ORTHO05D013213 1.2e-09 70.1 55 58.2
arahy.Tifrunner.gnm1.ann1.C8N37A Arachis hypogaea HOM05D004422 ORTHO05D013213 1.3e-08 66.6 44 68.2
arahy.Tifrunner.gnm1.ann1.GNE3C0 Arachis hypogaea HOM05D004422 ORTHO05D013213 1.3e-08 66.6 44 68.2
arahy.Tifrunner.gnm1.ann1.HBQ2MY Arachis hypogaea HOM05D004422 ORTHO05D013213 1.3e-08 66.6 44 68.2
arahy.Tifrunner.gnm1.ann1.BJ0H8V Arachis hypogaea HOM05D004422 ORTHO05D013213 2.2e-08 65.9 44 68.2
arahy.Tifrunner.gnm1.ann1.15LB1A Arachis hypogaea HOM05D000228 ORTHO05D013213 6.5e-08 64.3 43 67.4
arahy.Tifrunner.gnm1.ann1.6S8N9S Arachis hypogaea HOM05D000228 ORTHO05D013213 8.5e-08 63.9 44 65.9
TPR.G22860 Trifolium pratense HOM05D004422 ORTHO05D013213 8.5e-08 63.9 59 57.6
Psat7g007080 Pisum sativum HOM05D004422 ORTHO05D013213 2.5e-07 62.4 37 73.0
Thecc.04G201300 Theobroma cacao HOM05D004422 ORTHO05D001336 4.2e-07 61.6 55 56.4
TPR.G17647 Trifolium pratense HOM05D004422 ORTHO05D030592 2.7e-06 58.9 45 60.0
Thecc.03G162400 Theobroma cacao HOM05D004422 ORTHO05D408086 3.6e-06 58.5 45 55.6


User provided reference genes

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