Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62024003 Chenopodium quinoa HOM05D005041 ORTHO05D006003 7.4e-187 657.1 352 100.0
Ah.01g004760 Amaranthus hybridus HOM05D005041 ORTHO05D006003 7.1e-113 411.4 309 67.0
EL10Ac9g21025 Beta vulgaris HOM05D005041 ORTHO05D006003 7.8e-112 407.9 309 66.3
AUR62031794 Chenopodium quinoa HOM05D005041 ORTHO05D006003 1.1e-110 404.1 322 66.8
Hund00824 Selenicereus undatus HOM05D005041 ORTHO05D006003 1.6e-101 373.6 309 71.2
GSVIVG01020787001 Vitis vinifera HOM05D005041 ORTHO05D006003 3.6e-101 372.5 309 59.5
PGR142G0148 Punica granatum HOM05D005041 ORTHO05D006003 1.1e-100 370.9 309 60.5
COL.COLO4_33676 Corchorus olitorius HOM05D005041 ORTHO05D006003 2.0e-99 366.7 309 58.9
Manes.01G129200 Manihot esculenta HOM05D005041 ORTHO05D006003 7.6e-99 364.8 309 64.1
Eucgr.K01189 Eucalyptus grandis HOM05D005041 ORTHO05D006003 2.9e-98 362.8 309 58.3
Ciclev10015615m.g Citrus clementina HOM05D005041 ORTHO05D006003 3.8e-98 362.5 309 58.3
Gohir.D10G111500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 3.8e-98 362.5 309 58.6
Gorai.011G123100 Gossypium raimondii HOM05D005041 ORTHO05D006003 3.8e-98 362.5 309 58.6
Thecc.01G157600 Theobroma cacao HOM05D005041 ORTHO05D006003 3.8e-98 362.5 309 58.6
Atru.chr6.3564 Acer truncatum HOM05D005041 ORTHO05D006003 1.1e-97 360.9 309 57.6
Gohir.A10G154500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 3.2e-97 359.4 309 57.6
Nn3g21016 Nelumbo nucifera HOM05D005041 ORTHO05D006003 5.5e-97 358.6 309 57.6
Dinv26517 Davidia involucrata HOM05D005041 ORTHO05D006003 1.6e-96 357.1 307 57.3
Cc05_g09060 Coffea canephora HOM05D005041 ORTHO05D006003 7.9e-96 354.8 309 57.6
Sp4g13380 Schrenkiella parvula HOM05D005041 ORTHO05D006003 1.0e-95 354.4 309 56.6
Aqoxy1G01950 Aquilegia oxysepala HOM05D005041 ORTHO05D006003 2.3e-95 353.2 323 55.4
BcaB02g10347 Brassica carinata HOM05D005041 ORTHO05D006003 3.0e-95 352.8 309 57.0
Actinidia11183 Actinidia chinensis HOM05D005041 ORTHO05D006003 3.9e-95 352.4 309 56.3
AL283U10030 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 3.9e-95 352.4 318 56.3
AL4G25850 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 3.9e-95 352.4 318 56.3
CSS0038733 Camellia sinensis var. sinensis HOM05D005041 ORTHO05D006003 3.9e-95 352.4 309 55.7
Sed0006581 Sechium edule HOM05D005041 ORTHO05D006003 3.9e-95 352.4 309 56.3
Peaxi162Scf00828g00019 Petunia axillaris HOM05D005041 ORTHO05D006003 5.1e-95 352.1 309 57.3
A03p17270 Brassica napus HOM05D005041 ORTHO05D006003 6.7e-95 351.7 309 56.3
BraA03t11001Z Brassica rapa HOM05D005041 ORTHO05D006003 6.7e-95 351.7 309 56.3
Carub.0004s1211 Capsella rubella HOM05D005041 ORTHO05D006003 6.7e-95 351.7 318 56.6
Cfa022568 Carpinus fangiana HOM05D005041 ORTHO05D006003 8.7e-95 351.3 309 67.0
Manes.02G087100 Manihot esculenta HOM05D005041 ORTHO05D006003 8.7e-95 351.3 309 56.6
CiPaw.04G135200 Carya illinoinensis HOM05D005041 ORTHO05D006003 1.1e-94 350.9 309 67.0
TWI63G0392 Tripterygium wilfordii HOM05D005041 ORTHO05D006003 1.1e-94 350.9 309 56.0
MELO3C031066.2 Cucumis melo HOM05D005041 ORTHO05D006003 1.9e-94 350.1 309 56.0
TAR626G0242 Trochodendron aralioides HOM05D005041 ORTHO05D006003 1.9e-94 350.1 309 65.7
BcaB01g04071 Brassica carinata HOM05D005041 ORTHO05D006003 2.5e-94 349.7 309 56.0
C03p20380 Brassica napus HOM05D005041 ORTHO05D006003 4.3e-94 349.0 309 55.7
BolC3t14416H Brassica oleracea HOM05D005041 ORTHO05D006003 4.3e-94 349.0 309 55.7
Sed0005186 Sechium edule HOM05D005041 ORTHO05D006003 5.6e-94 348.6 309 55.3
AT2G30910 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 7.4e-94 348.2 318 56.3
CsaV3_6G037940 Cucumis sativus L. HOM05D005041 ORTHO05D006003 9.6e-94 347.8 309 56.0
BcaC02g11169 Brassica carinata HOM05D005041 ORTHO05D006003 1.3e-93 347.4 309 56.0
A05p14760 Brassica napus HOM05D005041 ORTHO05D006003 1.3e-93 347.4 309 56.0
C04p19760 Brassica napus HOM05D005041 ORTHO05D006003 1.3e-93 347.4 309 56.0
BolC4t23509H Brassica oleracea HOM05D005041 ORTHO05D006003 1.3e-93 347.4 309 56.0
DCAR_013571 Daucus carota HOM05D005041 ORTHO05D006003 1.3e-93 347.4 309 56.0
AT2G31300 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 1.6e-93 347.1 318 56.3
Solyc05g006470.4 Solanum lycopersicum HOM05D005041 ORTHO05D006003 2.1e-93 346.7 310 57.1
SGA_v2.0_scaffold8G04656 Striga asiatica HOM05D005041 ORTHO05D006003 8.1e-93 344.7 302 57.0
MSTRG.15060 Avicennia marina HOM05D005041 ORTHO05D006003 1.1e-92 344.4 301 56.5
THA.LOC104826236 Tarenaya hassleriana HOM05D005041 ORTHO05D006003 1.1e-92 344.4 309 66.0
ECA234G0116 Erigeron canadensis HOM05D005041 ORTHO05D006003 1.4e-92 344.0 310 54.5
Lalb_Chr20g0114161 Lupinus albus HOM05D005041 ORTHO05D006003 2.4e-92 343.2 309 56.3
Lsat_1_v5_gn_4_52360 Lactuca sativa HOM05D005041 ORTHO05D006003 5.3e-92 342.0 312 54.5
PSO675G8631 Papaver somniferum HOM05D005041 ORTHO05D006003 5.3e-92 342.0 311 53.7
PSO541G3312 Papaver somniferum HOM05D005041 ORTHO05D006003 1.2e-91 340.9 311 53.7
BraA05t20405Z Brassica rapa HOM05D005041 ORTHO05D006003 2.0e-91 340.1 311 55.3
Migut.D00514 Erythranthe guttata HOM05D005041 ORTHO05D006003 2.0e-91 340.1 302 56.6
Haze_13460 Corylus avellana HOM05D005041 ORTHO05D006003 4.5e-91 339.0 317 64.7
HanXRQChr16g0518211 Helianthus annuus HOM05D005041 ORTHO05D006003 1.0e-90 337.8 311 54.0
SGA_v2.0_scaffold1G00710 Striga asiatica HOM05D005041 ORTHO05D006003 1.0e-90 337.8 300 57.0
MBI06_g08528_MAGBIO Magnolia biondii HOM05D005041 ORTHO05D006003 1.7e-90 337.0 302 56.0
Nitab4.5_0004310g0020 Nicotiana tabacum HOM05D005041 ORTHO05D006003 2.2e-90 336.7 348 50.6
Aa31LG5G6010 Aethionema arabicum HOM05D005041 ORTHO05D006003 3.8e-90 335.9 341 54.5
A04p23600 Brassica napus HOM05D005041 ORTHO05D006003 4.9e-90 335.5 319 53.9
Hma1.2p1_0178F.1_g078240 Hydrangea macrophylla HOM05D005041 ORTHO05D006003 4.9e-90 335.5 307 54.4
Prupe.3G170000 Prunus persica HOM05D005041 ORTHO05D006003 6.5e-90 335.1 309 65.7
Lju124A34T49 Lonicera japonica HOM05D005041 ORTHO05D006003 8.4e-90 334.7 281 58.7
FAN09G1464 Fragaria x ananassa HOM05D000054 ORTHO05D006003 3.2e-89 332.8 303 66.0
ClCG09G022250 Citrullus lanatus HOM05D005041 ORTHO05D006003 1.2e-88 330.9 280 58.2
Duzib187G1062 Durio zibethinus HOM05D005041 ORTHO05D006003 1.2e-88 330.9 261 71.3
Potri.014G141700 Populus trichocarpa HOM05D005041 ORTHO05D006003 1.6e-88 330.5 309 66.0
MD09G1156800 Malus domestica HOM05D005041 ORTHO05D006003 2.1e-88 330.1 318 54.1
RcHm_v2.0_Chr2g0150441 Rosa chinensis HOM05D005041 ORTHO05D006003 2.7e-88 329.7 303 65.7
unitig_37.g12857 Utricularia gibba HOM05D005041 ORTHO05D006003 3.5e-88 329.3 312 51.9
Os02g0817200 Oryza sativa ssp. japonica HOM05D005041 ORTHO05D006003 1.0e-87 327.8 309 52.8
MD17G1143300 Malus domestica HOM05D005041 ORTHO05D006003 1.9e-86 323.6 309 64.1
QL08p043305 Quercus lobata HOM05D005041 ORTHO05D006003 2.8e-85 319.7 309 63.1
FvH4_6g37551 Fragaria vesca HOM05D005041 ORTHO05D006003 3.7e-85 319.3 281 68.7
Zm00001eb258930 Zea mays HOM05D005041 ORTHO05D006003 3.7e-85 319.3 309 50.5
Sc12g0003800 Simmondsia chinensis HOM05D005041 ORTHO05D006003 1.1e-84 317.8 286 68.2
Medtr3g049070 Medicago truncatula HOM05D005041 ORTHO05D006003 6.9e-84 315.1 308 62.7
CANSAT11G1484 Cannabis sativa HOM05D005041 ORTHO05D006003 9.0e-84 314.7 309 62.8
CDE10G0970 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 2.0e-83 313.5 308 51.0
Nitab4.5_0002312g0010 Nicotiana tabacum HOM05D005041 ORTHO05D006003 2.0e-83 313.5 309 62.8
Lj6g0019726 Lotus japonicus HOM05D005041 ORTHO05D006003 5.9e-83 312.0 309 63.1
Glyma.18G103800 Glycine max HOM05D005041 ORTHO05D006003 7.6e-83 311.6 309 62.1
Ca_14633_v3 Cicer arietinum L. HOM05D005041 ORTHO05D006003 1.0e-82 311.2 309 62.5
TPR.G13543 Trifolium pratense HOM05D005041 ORTHO05D006003 1.0e-82 311.2 327 50.8
Phvul.005G127400 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 6.5e-82 308.5 309 61.5
Psat5g186840 Pisum sativum HOM05D005041 ORTHO05D006003 6.5e-82 308.5 309 62.5
Glyma.08G311700 Glycine max HOM05D005041 ORTHO05D006003 1.1e-81 307.8 309 61.5
FAN02G2360 Fragaria x ananassa HOM05D000054 ORTHO05D006003 2.5e-81 306.6 280 58.6
FAN14G1924 Fragaria x ananassa HOM05D000054 ORTHO05D006003 2.5e-81 306.6 280 58.6
BcaB06g28392 Brassica carinata HOM05D005041 ORTHO05D006003 4.2e-81 305.8 281 54.1
VMungo1080G0034 Vigna mungo HOM05D005041 ORTHO05D006003 4.6e-80 302.4 309 60.8
VMungo0540G2345 Vigna mungo HOM05D005041 ORTHO05D006003 3.9e-79 299.3 285 53.0
Lj2A374G38 Lonicera japonica HOM05D005041 ORTHO05D006003 2.5e-78 296.6 281 54.4
arahy.Tifrunner.gnm1.ann1.5LHA9P Arachis hypogaea HOM05D005041 ORTHO05D006003 3.3e-78 296.2 305 61.3
arahy.Tifrunner.gnm1.ann1.RC242R Arachis hypogaea HOM05D005041 ORTHO05D006003 3.3e-78 296.2 305 61.3
Cpa.g.sc50.61 Carica papaya HOM05D005041 ORTHO05D006003 4.8e-77 292.4 253 57.7
HPP92_025809 Vanilla planifolia HOM05D005041 ORTHO05D006003 4.8e-77 292.4 309 52.1
vmacro12428 Vaccinium macrocarpon HOM05D005041 ORTHO05D006003 1.8e-76 290.4 307 49.5
CDE10G1309 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 5.3e-76 288.9 281 52.3
C04p60050 Brassica napus HOM05D005041 ORTHO05D006003 1.0e-74 284.6 286 52.1
Glyma.10G216300 Glycine max HOM05D005041 ORTHO05D006003 1.9e-73 280.4 268 53.4
Sopen05g002420 Solanum pennellii HOM05D005041 ORTHO05D006003 4.2e-73 279.3 257 56.8
BolC4t27508H Brassica oleracea HOM05D005041 ORTHO05D006003 9.4e-73 278.1 296 50.0
Phvul.006G036500 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 9.4e-73 278.1 306 57.8
BraA04t17886Z Brassica rapa HOM05D005041 ORTHO05D006003 3.9e-71 272.7 270 54.1
Pp3c19_12930 Physcomitrium patens HOM05D005041 ORTHO05D006003 1.3e-69 267.7 319 49.8
Thhalv10017625m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 1.7e-69 267.3 257 54.1
SMO364G0091 Selaginella moellendorffii HOM05D005041 ORTHO05D006003 1.7e-69 267.3 313 43.8
Dinv06276 Davidia involucrata HOM05D005041 ORTHO05D006003 6.3e-69 265.4 257 53.7
Pp3c18_4810 Physcomitrium patens HOM05D005041 ORTHO05D006003 2.6e-67 260.0 322 48.1
Zm00001eb191400 Zea mays HOM05D005041 ORTHO05D006003 5.9e-67 258.8 253 51.4
Thhalv10017010m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 1.7e-66 257.3 265 52.5
AagrBONN_evm.TU.Sc2ySwM_228.2899 Anthoceros agrestis HOM05D005041 ORTHO05D006003 2.5e-65 253.4 312 41.7
Mapoly0090s0056 Marchantia polymorpha HOM05D005041 ORTHO05D006003 3.3e-62 243.0 305 45.6
Mapoly0116s0052 Marchantia polymorpha HOM05D005041 ORTHO05D006003 5.7e-62 242.3 305 42.3
ATR0787G051 Amborella trichopoda HOM05D005041 ORTHO05D006003 5.2e-55 219.2 191 57.6
SalBow4G0308 Salvia bowleyana HOM05D005041 ORTHO05D006003 2.0e-46 190.7 118 72.0
Sabra14G0106900 Salix brachista HOM05D005041 ORTHO05D006003 2.8e-45 186.8 129 69.8
Oeu032123.1 Olea europaea HOM05D005041 ORTHO05D006003 1.8e-44 184.1 105 77.1
Nn6g34435 Nelumbo nucifera HOM05D005041 ORTHO05D006003 4.1e-44 183.0 128 66.4
Sopen05g002410 Solanum pennellii HOM05D005041 ORTHO05D006003 1.2e-35 154.8 272 39.7
CBR_g18699 Chara braunii HOM05D005041 ORTHO05D006003 2.1e-32 144.1 404 27.0
SHI23137 Sapria himalayana HOM05D005041 ORTHO05D006003 1.4e-31 141.4 138 50.7
SEGI_31471 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 5.4e-28 129.4 91 62.6
Actinidia12824 Actinidia chinensis HOM05D005041 ORTHO05D006003 7.0e-28 129.0 83 71.1
TAR383G0169 Trochodendron aralioides HOM05D005041 ORTHO05D006003 9.5e-25 118.6 75 66.7
Duzib147G0224 Durio zibethinus HOM05D005041 ORTHO05D006003 1.2e-22 111.7 59 84.7
CARHR124910 Cardamine hirsuta HOM05D005041 ORTHO05D006003 1.9e-20 104.4 111 51.4
Cfa026893 Carpinus fangiana HOM05D005041 ORTHO05D006003 3.2e-20 103.6 302 27.2
CARHR124390 Cardamine hirsuta HOM05D005041 ORTHO05D006003 5.4e-20 102.8 111 50.5
Duzib147G0812 Durio zibethinus HOM05D005041 ORTHO05D006003 8.6e-18 95.5 76 57.9
CARHR285180 Cardamine hirsuta HOM05D005041 ORTHO05D006003 4.7e-16 89.7 52 69.2
SEGI_36522 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 1.8e-15 87.8 59 64.4
AUR62031783 Chenopodium quinoa HOM05D004756 ORTHO05D005793 2.3e-15 87.4 48 87.5
Lsat_1_v5_gn_9_20280 Lactuca sativa HOM05D005041 ORTHO05D002973 5.2e-15 86.3 77 55.8
Haze_27289 Corylus avellana HOM05D005041 ORTHO05D006003 1.2e-11 75.1 285 34.4
CARHR059870 Cardamine hirsuta HOM05D005041 ORTHO05D006003 2.1e-11 74.3 57 61.4
SEGI_23574 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 5.6e-09 66.2 33 81.8


User provided reference genes

Program Settings