Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62023426 Chenopodium quinoa HOM05D005128 ORTHO05D006227 2.0e-71 272.3 136 100.0
AUR62013728 Chenopodium quinoa HOM05D005128 ORTHO05D006227 1.1e-69 266.5 136 97.8
EL10Ac1g00782 Beta vulgaris HOM05D005128 ORTHO05D006227 7.1e-69 263.8 136 95.6
Hund11691 Selenicereus undatus HOM05D005128 ORTHO05D006227 8.1e-65 250.4 136 89.0
Nn6g33850 Nelumbo nucifera HOM05D005128 ORTHO05D006227 2.9e-62 241.9 136 86.8
vmacro13485 Vaccinium macrocarpon HOM05D005128 ORTHO05D006227 8.4e-62 240.4 136 86.0
Actinidia40389 Actinidia chinensis HOM05D005128 ORTHO05D006227 1.1e-61 240.0 136 86.0
Prupe.2G127400 Prunus persica HOM05D005128 ORTHO05D006227 2.4e-61 238.8 136 86.8
COL.COLO4_12428 Corchorus olitorius HOM05D005128 ORTHO05D006227 3.2e-61 238.4 136 86.0
Thecc.01G392500 Theobroma cacao HOM05D005128 ORTHO05D006227 4.1e-61 238.0 136 86.0
Lj3g0015662 Lotus japonicus HOM05D005128 ORTHO05D006227 5.4e-61 237.7 136 85.3
QL04p030930 Quercus lobata HOM05D005128 ORTHO05D006227 5.4e-61 237.7 135 85.2
TAR374G1117 Trochodendron aralioides HOM05D005128 ORTHO05D006227 5.4e-61 237.7 136 85.3
Duzib138G0976 Durio zibethinus HOM05D005128 ORTHO05D006227 9.2e-61 236.9 136 85.3
Manes.01G272200 Manihot esculenta HOM05D005128 ORTHO05D006227 1.2e-60 236.5 136 84.6
Gohir.D12G099300 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.6e-60 236.1 136 85.3
Gorai.008G108000 Gossypium raimondii HOM05D005128 ORTHO05D006227 1.6e-60 236.1 136 85.3
CSS0048126 Camellia sinensis var. sinensis HOM05D005128 ORTHO05D006227 2.1e-60 235.7 136 86.8
MD02G1216700 Malus domestica HOM05D005128 ORTHO05D006227 2.7e-60 235.3 136 85.3
Medtr8g006725 Medicago truncatula HOM05D005128 ORTHO05D006227 2.7e-60 235.3 136 84.6
Glyma.07G112500 Glycine max HOM05D005128 ORTHO05D006227 7.8e-60 233.8 136 83.8
VMungo0331G0261 Vigna mungo HOM05D005128 ORTHO05D006227 7.8e-60 233.8 136 83.8
GSVIVG01018248001 Vitis vinifera HOM05D005128 ORTHO05D006227 7.8e-60 233.8 136 83.1
CsaV3_6G001140 Cucumis sativus L. HOM05D005128 ORTHO05D006227 1.0e-59 233.4 136 85.3
Phvul.010G052100 Phaseolus vulgaris HOM05D005128 ORTHO05D006227 1.0e-59 233.4 136 84.6
Psat0s118g0040 Pisum sativum HOM05D005128 ORTHO05D006227 1.0e-59 233.4 136 84.6
Cpa.g.sc101.28 Carica papaya HOM05D005128 ORTHO05D006227 1.3e-59 233.0 136 85.3
Ca_14055_v3 Cicer arietinum L. HOM05D005128 ORTHO05D006227 2.3e-59 232.3 136 83.1
Nitab4.5_0002874g0020 Nicotiana tabacum HOM05D005128 ORTHO05D006227 2.3e-59 232.3 131 85.5
Nitab4.5_0003553g0110 Nicotiana tabacum HOM05D005128 ORTHO05D006227 2.3e-59 232.3 131 85.5
Peaxi162Scf00030g00515 Petunia axillaris HOM05D005128 ORTHO05D006227 2.3e-59 232.3 131 84.7
TPR.G33121 Trifolium pratense HOM05D005128 ORTHO05D006227 2.3e-59 232.3 136 84.6
Cfa011089 Carpinus fangiana HOM05D005128 ORTHO05D006227 3.0e-59 231.9 136 83.8
Medtr1g112900 Medicago truncatula HOM05D005128 ORTHO05D006227 3.0e-59 231.9 136 83.1
Atru.chr5.161 Acer truncatum HOM05D005128 ORTHO05D006227 3.9e-59 231.5 134 83.6
Ciclev10029559m.g Citrus clementina HOM05D005128 ORTHO05D006227 3.9e-59 231.5 136 83.1
Gohir.A12G096500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 3.9e-59 231.5 136 83.1
TWI14G0708 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 3.9e-59 231.5 136 83.8
TWI14G1050 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 3.9e-59 231.5 136 83.8
Ah.05g173200 Amaranthus hybridus HOM05D005128 ORTHO05D006227 5.1e-59 231.1 200 64.0
MELO3C008212.2 Cucumis melo HOM05D005128 ORTHO05D006227 5.1e-59 231.1 136 84.6
unitig_0.g1324 Utricularia gibba HOM05D005128 ORTHO05D006227 5.1e-59 231.1 131 86.3
ClCG11G006910 Citrullus lanatus HOM05D005128 ORTHO05D006227 6.6e-59 230.7 136 83.8
CiPaw.13G027900 Carya illinoinensis HOM05D005128 ORTHO05D006227 1.1e-58 229.9 136 83.1
Sed0016496 Sechium edule HOM05D005128 ORTHO05D006227 1.1e-58 229.9 132 84.8
Thhalv10005116m.g Eutrema salsugineum HOM05D005128 ORTHO05D006227 1.9e-58 229.2 136 82.4
Lalb_Chr13g0304581 Lupinus albus HOM05D005128 ORTHO05D006227 1.9e-58 229.2 134 82.1
FvH4_7g09830 Fragaria vesca HOM05D005128 ORTHO05D006227 2.5e-58 228.8 132 84.1
FAN03G0006 Fragaria x ananassa HOM05D005128 ORTHO05D006227 2.5e-58 228.8 132 84.1
FAN10G0506 Fragaria x ananassa HOM05D005128 ORTHO05D006227 2.5e-58 228.8 132 84.1
RcHm_v2.0_Chr1g0346991 Rosa chinensis HOM05D005128 ORTHO05D006227 2.5e-58 228.8 132 84.1
FAN10G2714 Fragaria x ananassa HOM05D005128 ORTHO05D006227 3.3e-58 228.4 132 84.1
Solyc01g090450.3 Solanum lycopersicum HOM05D005128 ORTHO05D006227 3.3e-58 228.4 131 84.0
CAN.G362.11 Capsicum annuum HOM05D005128 ORTHO05D006227 4.3e-58 228.0 131 83.2
PGR042G1446 Punica granatum HOM05D005128 ORTHO05D006227 4.3e-58 228.0 136 81.6
Sp2g28380 Schrenkiella parvula HOM05D005128 ORTHO05D006227 4.3e-58 228.0 136 82.4
Glyma.03G114200 Glycine max HOM05D005128 ORTHO05D006227 7.3e-58 227.3 136 81.6
PSO782G3280 Papaver somniferum HOM05D005128 ORTHO05D006227 7.3e-58 227.3 136 83.1
Migut.B01551 Erythranthe guttata HOM05D005128 ORTHO05D006227 9.6e-58 226.9 131 83.2
FAN06G2910 Fragaria x ananassa HOM05D005128 ORTHO05D006227 9.6e-58 226.9 130 83.8
Lalb_Chr07g0195501 Lupinus albus HOM05D005128 ORTHO05D006227 9.6e-58 226.9 132 82.6
Aa31LG5G70 Aethionema arabicum HOM05D005128 ORTHO05D006227 1.2e-57 226.5 136 81.6
AL6G53500 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 1.2e-57 226.5 131 84.0
Eucgr.E01576 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.2e-57 226.5 136 81.6
Migut.A00726 Erythranthe guttata HOM05D005128 ORTHO05D006227 1.6e-57 226.1 131 83.2
HanXRQChr05g0138471 Helianthus annuus HOM05D005128 ORTHO05D006227 1.6e-57 226.1 131 84.7
MBI04_g34109_MAGBIO Magnolia biondii HOM05D005128 ORTHO05D006227 1.6e-57 226.1 132 83.3
Sopen01g036240 Solanum pennellii HOM05D005128 ORTHO05D006227 1.6e-57 226.1 131 83.2
A06p32130 Brassica napus HOM05D005128 ORTHO05D006227 2.1e-57 225.7 136 81.6
BolC3t18340H Brassica oleracea HOM05D005128 ORTHO05D006227 2.1e-57 225.7 136 81.6
BraA06t26141Z Brassica rapa HOM05D005128 ORTHO05D006227 2.1e-57 225.7 136 81.6
Carub.0006s3721 Capsella rubella HOM05D005128 ORTHO05D006227 2.1e-57 225.7 131 83.2
CARHR248040 Cardamine hirsuta HOM05D005128 ORTHO05D006227 2.1e-57 225.7 131 83.2
ECA234G3101 Erigeron canadensis HOM05D005128 ORTHO05D006227 2.1e-57 225.7 131 84.0
FAN06G2047 Fragaria x ananassa HOM05D005128 ORTHO05D006227 2.8e-57 225.3 132 83.3
TWI59G1443 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 2.8e-57 225.3 132 84.1
C03p60810 Brassica napus HOM05D005128 ORTHO05D006227 3.6e-57 224.9 136 81.6
Lsat_1_v5_gn_4_46700 Lactuca sativa HOM05D005128 ORTHO05D006227 3.6e-57 224.9 131 84.0
Aqoxy3G02773 Aquilegia oxysepala HOM05D005128 ORTHO05D006227 4.7e-57 224.6 129 84.5
AT4G01710 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 4.7e-57 224.6 131 83.2
PSO063G1454 Papaver somniferum HOM05D005128 ORTHO05D006227 6.2e-57 224.2 136 82.4
MSTRG.20701 Avicennia marina HOM05D005128 ORTHO05D006227 8.1e-57 223.8 131 83.2
Manes.05G053000 Manihot esculenta HOM05D005128 ORTHO05D006227 8.1e-57 223.8 131 82.4
THA.LOC104814071 Tarenaya hassleriana HOM05D005128 ORTHO05D006227 8.1e-57 223.8 136 81.6
Cc02_g24910 Coffea canephora HOM05D005128 ORTHO05D006227 1.2e-55 219.9 131 82.4
Potri.014G045200 Populus trichocarpa HOM05D005128 ORTHO05D006227 1.5e-55 219.5 138 79.0
SGA_v2.0_scaffold52G19215 Striga asiatica HOM05D005128 ORTHO05D006227 1.5e-55 219.5 127 83.5
ATR0057G123 Amborella trichopoda HOM05D005128 ORTHO05D006227 3.4e-55 218.4 136 77.9
Potri.002G136500 Populus trichocarpa HOM05D005128 ORTHO05D006227 4.4e-55 218.0 138 78.3
Carub.0008s2615 Capsella rubella HOM05D005128 ORTHO05D006227 7.6e-55 217.2 136 77.9
AT5G65274 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 1.7e-54 216.1 136 78.7
CDE11G0478 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 2.2e-54 215.7 136 77.9
arahy.Tifrunner.gnm1.ann1.L9RWF4 Arachis hypogaea HOM05D005128 ORTHO05D006227 3.8e-54 214.9 168 67.9
Zm00001eb201920 Zea mays HOM05D005128 ORTHO05D006227 8.4e-54 213.8 126 83.3
arahy.Tifrunner.gnm1.ann1.V0IP08 Arachis hypogaea HOM05D005128 ORTHO05D006227 1.1e-53 213.4 168 67.3
FAN03G2425 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.4e-53 213.0 155 70.3
Os11g0557900 Oryza sativa ssp. japonica HOM05D005128 ORTHO05D006227 7.1e-53 210.7 126 81.7
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 7.1e-53 210.7 128 80.5
HanXRQChr16g0520301 Helianthus annuus HOM05D005128 ORTHO05D006227 7.8e-52 207.2 125 82.4
AL8G42840 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 1.9e-50 202.6 131 76.3
Nn1g00897 Nelumbo nucifera HOM05D005128 ORTHO05D006227 5.6e-50 201.1 136 72.1
PGSC0003DMG400026042 Solanum tuberosum HOM05D005128 ORTHO05D006227 1.3e-49 199.9 184 58.7
Gohir.D11G020200 Gossypium hirsutum HOM05D005128 ORTHO05D006227 5.3e-48 194.5 136 69.9
Gohir.A13G167950 Gossypium hirsutum HOM05D005128 ORTHO05D006227 7.6e-47 190.7 136 67.6
MD07G1103100 Malus domestica HOM05D005128 ORTHO05D006227 7.6e-47 190.7 136 74.3
Sc02g0003030 Simmondsia chinensis HOM05D005128 ORTHO05D006227 1.7e-46 189.5 102 90.2
Gorai.007G021500 Gossypium raimondii HOM05D005128 ORTHO05D006227 2.2e-46 189.1 136 67.6
Haze_02808 Corylus avellana HOM05D005128 ORTHO05D006227 6.4e-46 187.6 137 72.3
AagrBONN_evm.TU.Sc2ySwM_369.249 Anthoceros agrestis HOM05D005128 ORTHO05D006227 2.4e-45 185.7 132 64.4
Mapoly0006s0266 Marchantia polymorpha HOM05D005128 ORTHO05D006227 5.4e-45 184.5 131 64.1
FAN01G3136 Fragaria x ananassa HOM05D005128 ORTHO05D006227 4.6e-44 181.4 132 72.0
AagrBONN_evm.TU.Sc2ySwM_369.256 Anthoceros agrestis HOM05D005128 ORTHO05D006227 2.3e-43 179.1 131 66.4
SMO203G0150 Selaginella moellendorffii HOM05D005128 ORTHO05D006227 1.6e-41 172.9 123 67.5
SGA_v2.0_scaffold153G36917 Striga asiatica HOM05D005128 ORTHO05D006227 1.8e-40 169.5 127 69.3
CiPaw.14G021600 Carya illinoinensis HOM05D005128 ORTHO05D006227 1.2e-39 166.8 144 64.6
Pp3c15_3940 Physcomitrium patens HOM05D005128 ORTHO05D006227 4.9e-38 161.4 132 58.3
SEGI_29435 Sequoiadendron giganteum HOM05D005128 ORTHO05D006227 4.6e-36 154.8 116 66.4
Dinv44074 Davidia involucrata HOM05D005128 ORTHO05D006227 1.3e-35 153.3 93 81.7
Lalb_Chr13g0304531 Lupinus albus HOM05D005128 ORTHO05D006227 4.3e-34 148.3 89 82.0
Lalb_Chr13g0304521 Lupinus albus HOM05D005128 ORTHO05D006227 9.6e-34 147.1 89 80.9
Lalb_Chr13g0304591 Lupinus albus HOM05D005128 ORTHO05D006227 9.6e-34 147.1 89 80.9
CDE02G2422 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 1.3e-33 146.7 79 86.1
SalBow7G0891 Salvia bowleyana HOM05D005128 ORTHO05D006227 2.1e-33 146.0 86 81.4
Hund07697 Selenicereus undatus HOM05D005128 ORTHO05D006227 1.1e-32 143.7 85 83.5
Oeu064660.1 Olea europaea HOM05D005128 ORTHO05D006227 1.4e-32 143.3 86 82.6
Eucgr.E00550 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.8e-32 142.9 97 72.2
Sed0016493 Sechium edule HOM05D005128 ORTHO05D006227 3.1e-32 142.1 136 59.6
Eucgr.L02413 Eucalyptus grandis HOM05D005128 ORTHO05D006227 4.0e-32 141.7 90 73.3
Nitab4.5_0029376g0010 Nicotiana tabacum HOM05D005128 ORTHO05D006227 4.0e-32 141.7 85 82.4
Eucgr.E04335 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.0e-30 137.1 90 72.2
SalBow5G0414 Salvia bowleyana HOM05D005128 ORTHO05D006227 2.9e-30 135.6 86 76.7
Eucgr.C04409 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.5e-29 132.5 92 71.7
MD15G1416400 Malus domestica HOM05D005128 ORTHO05D006227 2.7e-28 129.0 105 68.6
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 3.5e-28 128.6 75 80.0
Sabra14G0033100 Salix brachista HOM05D005128 ORTHO05D006227 1.8e-27 126.3 71 80.3
Eucgr.J01375 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.3e-27 125.9 90 70.0
Eucgr.J01567 Eucalyptus grandis HOM05D005128 ORTHO05D006227 5.7e-26 121.3 68 80.9
Eucgr.E02797 Eucalyptus grandis HOM05D005128 ORTHO05D006227 7.4e-26 120.9 91 70.3
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 2.1e-20 102.8 65 73.8
Hund17078 Selenicereus undatus HOM05D005128 ORTHO05D006227 1.0e-19 100.5 83 62.7
Gorai.002G193300 Gossypium raimondii HOM05D005128 ORTHO05D006227 3.0e-19 99.0 91 56.0
Gohir.D01G155933 Gossypium hirsutum HOM05D005128 ORTHO05D006227 9.1e-16 87.4 91 51.6
Lalb_Chr13g0304551 Lupinus albus HOM05D005128 ORTHO05D006227 2.0e-15 86.3 46 80.4
TPR.G6927 Trifolium pratense HOM05D005128 ORTHO05D006922 7.7e-15 84.3 45 80.0
MD07G1103500 Malus domestica HOM05D005128 ORTHO05D006227 7.9e-12 74.3 56 73.2
TPR.G6976 Trifolium pratense HOM05D005128 ORTHO05D006227 6.3e-09 64.7 41 73.2
BcaC03g18322 Brassica carinata HOM05D005128 ORTHO05D006227 8.2e-09 64.3 42 73.8
Gohir.A11G020500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 2.9e-06 55.8 47 61.7


User provided reference genes

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