Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62022601 Chenopodium quinoa HOM05D004707 ORTHO05D005837 2.6e-289 998.0 519 100.0
AUR62004395 Chenopodium quinoa HOM05D004707 ORTHO05D005837 1.4e-263 912.5 519 90.9
Ah.05g180290 Amaranthus hybridus HOM05D004707 ORTHO05D005837 3.1e-205 718.8 541 69.3
EL10Ac1g00374 Beta vulgaris HOM05D004707 ORTHO05D005837 4.4e-196 688.3 542 68.1
Hund16663 Selenicereus undatus HOM05D004707 ORTHO05D005837 9.0e-165 584.3 550 59.3
Sc06g0007250 Simmondsia chinensis HOM05D004707 ORTHO05D005837 4.6e-153 545.4 577 52.7
Dinv43847 Davidia involucrata HOM05D004707 ORTHO05D005837 3.9e-144 515.8 482 58.9
TAR375G0400 Trochodendron aralioides HOM05D004707 ORTHO05D005837 5.3e-141 505.4 443 61.4
CSS0041396 Camellia sinensis var. sinensis HOM05D004707 ORTHO05D005837 7.7e-140 501.5 550 52.2
CiPaw.01G064900 Carya illinoinensis HOM05D004707 ORTHO05D005837 2.2e-139 500.0 549 51.7
Lj3g0007734 Lotus japonicus HOM05D004707 ORTHO05D005837 1.9e-138 496.9 475 57.1
Eucgr.D02313 Eucalyptus grandis HOM05D004707 ORTHO05D005837 2.5e-138 496.5 474 56.8
Prupe.2G174600 Prunus persica HOM05D004707 ORTHO05D005837 3.2e-138 496.1 544 52.2
Haze_15544 Corylus avellana HOM05D004707 ORTHO05D005837 6.1e-137 491.9 549 52.1
Thecc.01G355200 Theobroma cacao HOM05D004707 ORTHO05D005837 7.9e-137 491.5 553 51.4
PGR031G2856 Punica granatum HOM05D004707 ORTHO05D005837 1.8e-136 490.3 554 52.5
Actinidia18541 Actinidia chinensis HOM05D004707 ORTHO05D005837 2.3e-136 490.0 554 51.8
Ca_23597_v3 Cicer arietinum L. HOM05D004707 ORTHO05D005837 1.3e-134 484.2 450 58.7
Potri.002G162100 Populus trichocarpa HOM05D004707 ORTHO05D005837 4.8e-134 482.3 462 57.6
RcHm_v2.0_Chr1g0357041 Rosa chinensis HOM05D004707 ORTHO05D005837 4.1e-133 479.2 544 51.5
Lj9C587T4 Lonicera japonica HOM05D004707 ORTHO05D005837 4.5e-132 475.7 550 50.2
COL.COLO4_12751 Corchorus olitorius HOM05D004707 ORTHO05D005837 5.9e-132 475.3 422 58.5
VMungo0331G0696 Vigna mungo HOM05D004707 ORTHO05D005837 1.7e-131 473.8 463 55.9
arahy.Tifrunner.gnm1.ann1.HL3201 Arachis hypogaea HOM05D004707 ORTHO05D005837 2.2e-131 473.4 449 56.6
Potri.014G088200 Populus trichocarpa HOM05D004707 ORTHO05D005837 2.2e-131 473.4 527 51.6
Glyma.07G067400 Glycine max HOM05D004707 ORTHO05D005837 2.9e-131 473.0 458 55.2
Glyma.16G033400 Glycine max HOM05D004707 ORTHO05D005837 2.9e-131 473.0 544 50.9
Phvul.010G102400 Phaseolus vulgaris HOM05D004707 ORTHO05D005837 2.9e-131 473.0 462 55.6
CANSAT56G0368 Cannabis sativa HOM05D004707 ORTHO05D005837 3.8e-131 472.6 454 56.6
Ciclev10028150m.g Citrus clementina HOM05D004707 ORTHO05D005837 3.8e-131 472.6 544 50.9
Manes.01G254000 Manihot esculenta HOM05D004707 ORTHO05D005837 8.5e-131 471.5 489 53.2
Gorai.004G041800 Gossypium raimondii HOM05D004707 ORTHO05D005837 1.1e-130 471.1 548 49.8
TWI59G0961 Tripterygium wilfordii HOM05D004707 ORTHO05D005837 1.1e-130 471.1 558 48.6
Gohir.A08G032300 Gossypium hirsutum HOM05D004707 ORTHO05D005837 1.5e-130 470.7 549 49.5
Lalb_Chr04g0259171 Lupinus albus HOM05D004707 ORTHO05D005837 1.5e-130 470.7 444 56.8
Rhsim01G0164800 Rhododendron simsii HOM05D004707 ORTHO05D005837 1.5e-130 470.7 558 50.9
CsaV3_3G008770 Cucumis sativus L. HOM05D004707 ORTHO05D005837 2.1e-129 466.8 479 54.3
Gorai.008G120200 Gossypium raimondii HOM05D004707 ORTHO05D005837 3.6e-129 466.1 542 51.1
Nitab4.5_0000690g0060 Nicotiana tabacum HOM05D004707 ORTHO05D005837 3.6e-129 466.1 509 51.3
arahy.Tifrunner.gnm1.ann1.YM6R3T Arachis hypogaea HOM05D004707 ORTHO05D005837 6.1e-129 465.3 452 56.4
THA.LOC104825856 Tarenaya hassleriana HOM05D004707 ORTHO05D005837 8.0e-129 464.9 547 49.4
MELO3C006094.2 Cucumis melo HOM05D004707 ORTHO05D005837 1.4e-128 464.2 479 53.9
FvH4_7g15010 Fragaria vesca HOM05D004707 ORTHO05D005837 1.4e-128 464.2 533 51.2
PSO063G6595 Papaver somniferum HOM05D004707 ORTHO05D005837 1.4e-128 464.2 455 55.2
Peaxi162Scf00585g00318 Petunia axillaris HOM05D004707 ORTHO05D005837 1.8e-128 463.8 461 55.7
Gohir.D12G111000 Gossypium hirsutum HOM05D004707 ORTHO05D005837 2.3e-128 463.4 542 50.7
FAN06G2758 Fragaria x ananassa HOM05D004707 ORTHO05D005837 6.7e-128 461.8 457 56.5
vmacro20909 Vaccinium macrocarpon HOM05D004707 ORTHO05D005837 1.1e-127 461.1 488 53.1
Sed0023991 Sechium edule HOM05D004707 ORTHO05D005837 1.5e-127 460.7 534 51.1
FAN03G0218 Fragaria x ananassa HOM05D004707 ORTHO05D005837 3.3e-127 459.5 458 56.3
CAN.G91.14 Capsicum annuum HOM05D004707 ORTHO05D005837 4.4e-127 459.1 517 50.5
FAN10G2784 Fragaria x ananassa HOM05D004707 ORTHO05D005837 4.4e-127 459.1 535 51.2
Sopen10g005800 Solanum pennellii HOM05D004707 ORTHO05D005837 7.5e-127 458.4 426 56.8
FAN10G1283 Fragaria x ananassa HOM05D004707 ORTHO05D005837 2.8e-126 456.4 458 55.7
Sp6g00340 Schrenkiella parvula HOM05D004707 ORTHO05D005837 4.8e-126 455.7 454 55.5
FAN01G2554 Fragaria x ananassa HOM05D004707 ORTHO05D005837 1.4e-125 454.1 433 57.5
Oeu015224.1 Olea europaea HOM05D004707 ORTHO05D005837 1.8e-125 453.8 431 56.4
CARHR248350 Cardamine hirsuta HOM05D004707 ORTHO05D005837 2.4e-125 453.4 535 50.3
Cc00_g17840 Coffea canephora HOM05D004707 ORTHO05D005837 5.3e-125 452.2 459 52.1
FAN06G3707 Fragaria x ananassa HOM05D004707 ORTHO05D005837 7.0e-125 451.8 520 51.3
Medtr8g028760 Medicago truncatula HOM05D004707 ORTHO05D005837 1.2e-124 451.1 442 54.8
Solyc10g012060.3 Solanum lycopersicum HOM05D004707 ORTHO05D005837 2.0e-124 450.3 531 49.0
Aqoxy5G00593 Aquilegia oxysepala HOM05D004707 ORTHO05D005837 7.7e-124 448.4 495 51.5
ClCG05G001380 Citrullus lanatus HOM05D004707 ORTHO05D005837 1.0e-123 448.0 447 55.3
DCAR_008625 Daucus carota HOM05D001113 ORTHO05D000968 1.7e-123 447.2 422 56.9
AL6G53230 Arabidopsis lyrata HOM05D004707 ORTHO05D005837 5.5e-122 442.2 532 48.7
AT4G00290 Arabidopsis thaliana HOM05D004707 ORTHO05D005837 9.4e-122 441.4 430 56.0
BcaC03g16035 Brassica carinata HOM05D004707 ORTHO05D005837 1.0e-120 438.0 395 59.0
A02p24040 Brassica napus HOM05D000315 ORTHO05D000527 1.4e-120 437.6 394 59.4
BraA02t07399Z Brassica rapa HOM05D000315 ORTHO05D000527 1.4e-120 437.6 394 59.4
Aa31LG5G670 Aethionema arabicum HOM05D004707 ORTHO05D005837 1.8e-120 437.2 542 48.5
BcaB01g02199 Brassica carinata HOM05D004707 ORTHO05D005837 1.8e-120 437.2 388 59.0
BolC2t09805H Brassica oleracea HOM05D004707 ORTHO05D005837 3.0e-120 436.4 395 59.0
C02p37880 Brassica napus HOM05D000315 ORTHO05D000527 4.0e-120 436.0 393 59.0
Lsat_1_v5_gn_4_43000 Lactuca sativa HOM05D004707 ORTHO05D005837 3.4e-119 433.0 445 52.6
Carub.0006s3698 Capsella rubella HOM05D004707 ORTHO05D005837 4.4e-119 432.6 460 52.6
Gohir.D08G043200 Gossypium hirsutum HOM05D004707 ORTHO05D005837 1.0e-115 421.4 520 48.5
Sopen10g005790 Solanum pennellii HOM05D004707 ORTHO05D005837 6.5e-115 418.7 424 52.6
GSVIVG01026989001 Vitis vinifera HOM05D004707 ORTHO05D005837 6.5e-115 418.7 405 57.3
ATR0661G226 Amborella trichopoda HOM05D004707 ORTHO05D005837 1.1e-114 417.9 439 52.6
vmacro13252 Vaccinium macrocarpon HOM05D004707 ORTHO05D005837 2.7e-113 413.3 558 47.1
Gohir.A12G107750 Gossypium hirsutum HOM05D004707 ORTHO05D005837 4.4e-111 406.0 536 47.2
Nn6g33309 Nelumbo nucifera HOM05D004707 ORTHO05D005837 4.4e-111 406.0 528 47.3
Thhalv10028609m.g Eutrema salsugineum HOM05D004707 ORTHO05D005837 3.1e-109 399.8 399 54.9
HanXRQChr16g0520681 Helianthus annuus HOM05D004707 ORTHO05D005837 2.3e-107 393.7 450 48.4
unitig_749.g14344 Utricularia gibba HOM05D004707 ORTHO05D006649 8.6e-107 391.7 435 50.1
Solyc10g012050.3 Solanum lycopersicum HOM05D004707 ORTHO05D005837 2.5e-106 390.2 393 52.7
HPP92_025632 Vanilla planifolia HOM05D004707 ORTHO05D005837 3.3e-106 389.8 473 50.3
Zm00001eb073200 Zea mays HOM05D004707 ORTHO05D005837 8.9e-104 381.7 467 45.4
Lalb_Chr17g0339181 Lupinus albus HOM05D004707 ORTHO05D005837 2.6e-103 380.2 403 51.4
ECA234G0026 Erigeron canadensis HOM05D004707 ORTHO05D005837 2.4e-101 373.6 463 44.5
SGA_v2.0_scaffold95G28817 Striga asiatica HOM05D004707 ORTHO05D005837 9.2e-101 371.7 492 45.3
Os04g0578700 Oryza sativa ssp. japonica HOM05D004707 ORTHO05D005837 3.9e-99 366.3 441 46.7
Peaxi162Scf00020g01222 Petunia axillaris HOM05D004707 ORTHO05D005837 4.3e-98 362.8 400 51.5
unitig_26.g9294 Utricularia gibba HOM05D004707 ORTHO05D005837 5.6e-98 362.5 388 49.0
Atru.chr5.540 Acer truncatum HOM05D004707 ORTHO05D005837 6.4e-94 349.0 433 48.5
Rhsim07G0012400 Rhododendron simsii HOM05D004707 ORTHO05D005837 1.6e-92 344.4 539 42.9
vmacro20907 Vaccinium macrocarpon HOM05D004707 ORTHO05D005837 1.5e-90 337.8 439 46.0
SHI13401 Sapria himalayana HOM05D004707 ORTHO05D005837 9.5e-90 335.1 440 43.9
Os02g0681000 Oryza sativa ssp. japonica HOM05D004707 ORTHO05D005837 4.0e-88 329.7 400 44.2
TPR.G14976 Trifolium pratense HOM05D004707 ORTHO05D005837 5.2e-88 329.3 351 53.0
Psat4g156520 Pisum sativum HOM05D004707 ORTHO05D005837 3.4e-87 326.6 335 54.9
Cpa.g.sc11.45 Carica papaya HOM05D004707 ORTHO05D005837 4.4e-87 326.2 442 45.9
Migut.B01788 Erythranthe guttata HOM05D004707 ORTHO05D005837 3.1e-80 303.5 392 44.9
Mapoly0001s0022 Marchantia polymorpha HOM05D004707 ORTHO05D005837 3.2e-77 293.5 387 40.6
Pp3c10_20950 Physcomitrium patens HOM05D004707 ORTHO05D005837 1.6e-76 291.2 396 40.4
SMO116G0175 Selaginella moellendorffii HOM05D004707 ORTHO05D005837 1.3e-70 271.6 369 39.0
Nitab4.5_0000200g0180 Nicotiana tabacum HOM05D004707 ORTHO05D005837 1.9e-69 267.7 296 50.7
Pp3c9_20150 Physcomitrium patens HOM05D004707 ORTHO05D005837 1.6e-60 238.0 338 39.9
Pp3c15_19020 Physcomitrium patens HOM05D004707 ORTHO05D005837 3.5e-60 236.9 325 38.8
MD01G1068400 Malus domestica HOM05D004707 ORTHO05D005837 5.1e-59 233.0 230 57.0
CDE04G1515 Ceratophyllum demersum HOM05D004707 ORTHO05D005837 5.3e-56 223.0 178 65.2
AT4G00234 Arabidopsis thaliana HOM05D004707 ORTHO05D005837 2.0e-55 221.1 255 50.6
Pp3c14_810 Physcomitrium patens HOM05D004707 ORTHO05D005837 2.6e-55 220.7 314 40.1
SEGI_13365 Sequoiadendron giganteum HOM05D004707 ORTHO05D005837 9.9e-55 218.8 264 48.5
AagrBONN_evm.TU.Sc2ySwM_344.1481 Anthoceros agrestis HOM05D004707 ORTHO05D005837 9.6e-42 175.6 282 39.4
Atru.ctg942.22 Acer truncatum HOM05D004707 ORTHO05D005837 2.8e-41 174.1 236 44.1
Cpa.g.sc11.48 Carica papaya HOM05D004707 ORTHO05D005837 1.2e-28 132.1 96 64.6
Mapoly0003s0092 Marchantia polymorpha HOM05D004707 ORTHO05D005837 1.2e-28 132.1 297 27.9
Hma1.2p1_0071F.1_g037910 Hydrangea macrophylla HOM05D004707 ORTHO05D005837 6.1e-28 129.8 100 60.0
SMO361G0690 Selaginella moellendorffii HOM05D004707 ORTHO05D005837 7.9e-28 129.4 281 29.5
SMO361G0110 Selaginella moellendorffii HOM05D004707 ORTHO05D005837 1.8e-27 128.3 291 28.2
Pp3c3_12760 Physcomitrium patens HOM05D004707 ORTHO05D005837 8.2e-25 119.4 290 29.0
Rhsim05G0021600 Rhododendron simsii HOM05D004707 ORTHO05D005837 1.1e-24 119.0 181 40.9
Rhsim05G0008500 Rhododendron simsii HOM05D004707 ORTHO05D005837 3.1e-24 117.5 181 40.9
Pp3c9_20120 Physcomitrium patens HOM05D004707 ORTHO05D005837 1.2e-23 115.5 179 35.8
Rhsim07G0181500 Rhododendron simsii HOM05D004707 ORTHO05D005837 1.0e-22 112.5 417 27.1
SEGI_23190 Sequoiadendron giganteum HOM05D004707 ORTHO05D005837 1.0e-22 112.5 112 42.9
AagrBONN_evm.TU.Sc2ySwM_368.2343 Anthoceros agrestis HOM05D004707 ORTHO05D005837 3.2e-21 107.5 259 27.8
Pp3c13_20730 Physcomitrium patens HOM05D004707 ORTHO05D005837 4.2e-21 107.1 268 27.2
MBI09_g26550_MAGBIO Magnolia biondii HOM05D004707 ORTHO05D005837 2.1e-20 104.8 103 57.3
Lsat_1_v5_gn_4_48081 Lactuca sativa HOM05D004707 ORTHO05D005837 1.6e-15 88.6 143 35.7
Migut.B01027 Erythranthe guttata HOM05D004707 ORTHO05D005837 7.7e-15 86.3 161 31.1
HanXRQChr09g0268301 Helianthus annuus HOM05D004707 ORTHO05D005837 5.0e-14 83.6 84 48.8
HanXRQChr11g0349701 Helianthus annuus HOM05D004707 ORTHO05D005837 5.0e-14 83.6 84 48.8
HanXRQChr17g0534491 Helianthus annuus HOM05D004707 ORTHO05D005837 5.0e-14 83.6 84 48.8
Lsat_1_v5_gn_4_48041 Lactuca sativa HOM05D004707 ORTHO05D005837 3.2e-13 80.9 163 33.1
TAR626G0135 Trochodendron aralioides HOM05D004707 ORTHO05D005837 5.5e-13 80.1 60 71.7
SEGI_38275 Sequoiadendron giganteum HOM05D004707 ORTHO05D005837 2.6e-10 71.2 74 55.4
Migut.B01028 Erythranthe guttata HOM05D004707 ORTHO05D005837 2.8e-09 67.8 129 37.2
MBI01_g45834_MAGBIO Magnolia biondii HOM05D004707 ORTHO05D005837 1.1e-08 65.9 62 58.1
MBI18_g40888_MAGBIO Magnolia biondii HOM05D004707 ORTHO05D005837 3.1e-08 64.3 44 72.7
MCO04G456 Micromonas commoda HOM05D002409 ORTHO05D002557 1.2e-07 62.4 277 25.6
Cre01.g055432 Chlamydomonas reinhardtii HOM05D002409 ORTHO05D002557 2.7e-07 61.2 211 19.9


User provided reference genes

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