Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62021912 Chenopodium quinoa HOM05D006131 ORTHO05D008649 0.0e+00 1544.6 756 100.0
AUR62012745 Chenopodium quinoa HOM05D006131 ORTHO05D008649 0.0e+00 1468.0 740 96.9
EL10Ac8g20116 Beta vulgaris HOM05D006131 ORTHO05D008649 0.0e+00 1390.6 740 90.4
Ah.09g234600 Amaranthus hybridus HOM05D006131 ORTHO05D008649 0.0e+00 1365.5 740 88.9
Hund21429 Selenicereus undatus HOM05D006131 ORTHO05D008649 0.0e+00 1322.0 737 85.9
QL05p072288 Quercus lobata HOM05D006131 ORTHO05D008649 0.0e+00 1271.9 739 81.6
CANSAT56G3890 Cannabis sativa HOM05D006131 ORTHO05D008649 0.0e+00 1260.7 737 80.7
Prupe.4G016400 Prunus persica HOM05D006131 ORTHO05D008649 0.0e+00 1256.9 740 80.5
CiPaw.09G096900 Carya illinoinensis HOM05D006131 ORTHO05D008649 0.0e+00 1252.3 740 80.5
GSVIVG01012668001 Vitis vinifera HOM05D006131 ORTHO05D008649 0.0e+00 1251.5 740 80.5
TAR627G0028 Trochodendron aralioides HOM05D006131 ORTHO05D008649 0.0e+00 1250.7 735 80.7
Potri.011G009600 Populus trichocarpa HOM05D006131 ORTHO05D008649 0.0e+00 1246.9 740 79.6
arahy.Tifrunner.gnm1.ann1.34DY78 Arachis hypogaea HOM05D006131 ORTHO05D008649 0.0e+00 1246.5 736 80.3
TPR.G36994 Trifolium pratense HOM05D006131 ORTHO05D008649 0.0e+00 1245.3 737 79.9
Cfa000174 Carpinus fangiana HOM05D006131 ORTHO05D008649 0.0e+00 1243.8 740 80.0
Medtr4g132500 Medicago truncatula HOM05D006131 ORTHO05D008649 0.0e+00 1243.8 737 79.6
Lj1C1234T13 Lonicera japonica HOM05D006131 ORTHO05D008649 0.0e+00 1240.7 737 79.8
Manes.17G028300 Manihot esculenta HOM05D006131 ORTHO05D008649 0.0e+00 1238.8 740 79.9
MD10G1325600 Malus domestica HOM05D006131 ORTHO05D008649 0.0e+00 1238.0 740 79.6
Psat4g005600 Pisum sativum HOM05D006131 ORTHO05D008649 0.0e+00 1237.6 739 79.2
Cpa.g.sc152.47 Carica papaya HOM05D006131 ORTHO05D008649 0.0e+00 1236.9 740 79.5
Glyma.07G263100 Glycine max HOM05D006131 ORTHO05D008649 0.0e+00 1236.9 737 80.2
Actinidia02346 Actinidia chinensis HOM05D006131 ORTHO05D008649 0.0e+00 1233.0 740 78.9
FvH4_3g01570 Fragaria vesca HOM05D006131 ORTHO05D008649 0.0e+00 1233.0 740 79.2
Ca_21065_v3 Cicer arietinum L. HOM05D006131 ORTHO05D008649 0.0e+00 1231.5 736 79.6
Ciclev10014171m.g Citrus clementina HOM05D006131 ORTHO05D008649 0.0e+00 1230.3 740 79.1
TWI38G1228 Tripterygium wilfordii HOM05D006131 ORTHO05D008649 0.0e+00 1230.3 740 79.1
Lj4g0011530 Lotus japonicus HOM05D006131 ORTHO05D008649 0.0e+00 1229.5 735 78.4
CsaV3_6G048760 Cucumis sativus L. HOM05D006131 ORTHO05D008649 0.0e+00 1228.0 738 78.5
Duzib235G1477 Durio zibethinus HOM05D006131 ORTHO05D008649 0.0e+00 1226.8 737 79.1
Nitab4.5_0004743g0170 Nicotiana tabacum HOM05D006131 ORTHO05D008649 0.0e+00 1226.8 739 79.6
FAN25G2733 Fragaria x ananassa HOM05D006131 ORTHO05D008649 0.0e+00 1225.3 740 78.9
Hma1.2p1_0298F.1_g117540 Hydrangea macrophylla HOM05D006131 ORTHO05D008649 0.0e+00 1224.5 739 79.0
Sopen02g025670 Solanum pennellii HOM05D006131 ORTHO05D008649 0.0e+00 1224.2 741 79.5
RcHm_v2.0_Chr5g0002381 Rosa chinensis HOM05D006131 ORTHO05D008649 0.0e+00 1223.8 740 79.1
Gorai.010G183100 Gossypium raimondii HOM05D006131 ORTHO05D008649 0.0e+00 1223.4 737 79.0
Sabra11G0007600 Salix brachista HOM05D006131 ORTHO05D008649 0.0e+00 1223.4 729 79.3
Gohir.D06G156700 Gossypium hirsutum HOM05D006131 ORTHO05D008649 0.0e+00 1221.1 737 78.8
Aqoxy1G03037 Aquilegia oxysepala HOM05D006131 ORTHO05D008649 0.0e+00 1218.8 740 77.8
HanXRQChr16g0516961 Helianthus annuus HOM05D006131 ORTHO05D008649 0.0e+00 1218.8 740 78.0
Lalb_Chr07g0177101 Lupinus albus HOM05D006131 ORTHO05D008649 0.0e+00 1218.8 737 77.9
Solyc02g080990.2 Solanum lycopersicum HOM05D006131 ORTHO05D008649 0.0e+00 1218.8 741 79.1
Nn7g38008 Nelumbo nucifera HOM05D006131 ORTHO05D008649 0.0e+00 1217.6 740 78.0
VMungo1215G1261 Vigna mungo HOM05D006131 ORTHO05D008649 0.0e+00 1216.8 737 78.3
Nitab4.5_0001409g0150 Nicotiana tabacum HOM05D006131 ORTHO05D008649 0.0e+00 1216.1 741 78.9
arahy.Tifrunner.gnm1.ann1.EVIY4K Arachis hypogaea HOM05D006131 ORTHO05D008649 0.0e+00 1215.7 795 74.1
Gohir.A06G150500 Gossypium hirsutum HOM05D006131 ORTHO05D008649 0.0e+00 1214.1 737 78.0
Cc09_g01330 Coffea canephora HOM05D006131 ORTHO05D008649 0.0e+00 1211.8 740 77.7
Haze_06845 Corylus avellana HOM05D006131 ORTHO05D008649 0.0e+00 1210.7 815 73.0
CSS0011000 Camellia sinensis var. sinensis HOM05D006131 ORTHO05D008649 0.0e+00 1208.4 731 79.1
Sed0009561 Sechium edule HOM05D006131 ORTHO05D008649 0.0e+00 1208.4 738 77.9
ClCG01G021720 Citrullus lanatus HOM05D006131 ORTHO05D008649 0.0e+00 1204.1 757 76.0
Aqoxy1G02667 Aquilegia oxysepala HOM05D006131 ORTHO05D008649 0.0e+00 1202.2 773 74.5
Eucgr.E03997 Eucalyptus grandis HOM05D006131 ORTHO05D008649 0.0e+00 1198.7 740 76.9
A03p29960 Brassica napus HOM05D006131 ORTHO05D008649 0.0e+00 1196.4 736 77.3
BolC3t15934H Brassica oleracea HOM05D006131 ORTHO05D008649 0.0e+00 1196.4 736 77.0
BraA03t12185Z Brassica rapa HOM05D006131 ORTHO05D008649 0.0e+00 1194.5 736 77.0
PGR042G2674 Punica granatum HOM05D006131 ORTHO05D008649 0.0e+00 1192.6 740 76.2
C03p36250 Brassica napus HOM05D006131 ORTHO05D008649 0.0e+00 1191.8 736 76.6
THA.LOC104806315 Tarenaya hassleriana HOM05D006131 ORTHO05D008649 0.0e+00 1191.0 740 76.1
Carub.0006s3219 Capsella rubella HOM05D006131 ORTHO05D008649 0.0e+00 1187.2 740 76.2
Thhalv10028396m.g Eutrema salsugineum HOM05D006131 ORTHO05D008649 0.0e+00 1186.4 736 76.6
AT4G04350 Arabidopsis thaliana HOM05D006131 ORTHO05D008649 0.0e+00 1185.6 736 76.2
Oeu051199.1 Olea europaea HOM05D006131 ORTHO05D008649 0.0e+00 1183.7 783 73.9
AL6G47890 Arabidopsis lyrata HOM05D006131 ORTHO05D008649 0.0e+00 1182.9 740 76.1
AL6G47902 Arabidopsis lyrata HOM05D006131 ORTHO05D008649 0.0e+00 1182.9 740 76.1
Sp6g04490 Schrenkiella parvula HOM05D006131 ORTHO05D008649 0.0e+00 1182.5 736 76.4
Peaxi162Scf00178g00056 Petunia axillaris HOM05D006131 ORTHO05D008649 0.0e+00 1181.8 739 77.4
PSO541G3086 Papaver somniferum HOM05D006131 ORTHO05D008649 0.0e+00 1179.1 767 73.0
Aa31LG9G9850 Aethionema arabicum HOM05D006131 ORTHO05D008649 0.0e+00 1173.3 738 76.4
Migut.M01378 Erythranthe guttata HOM05D006131 ORTHO05D008649 0.0e+00 1173.3 741 75.6
Hma1.2p1_0298F.1_g117550 Hydrangea macrophylla HOM05D006131 ORTHO05D008649 0.0e+00 1154.0 708 77.8
Rhsim13G0150700 Rhododendron simsii HOM05D006131 ORTHO05D008649 0.0e+00 1148.3 878 65.5
ATR0317G053 Amborella trichopoda HOM05D006131 ORTHO05D008649 0.0e+00 1139.4 729 74.1
DCAR_028357 Daucus carota HOM05D006131 ORTHO05D008649 0.0e+00 1128.2 795 69.2
Os01g0120300 Oryza sativa ssp. japonica HOM05D006131 ORTHO05D008649 0.0e+00 1127.5 728 72.7
SalBow8G4181 Salvia bowleyana HOM05D006131 ORTHO05D008649 0.0e+00 1125.5 740 73.4
Zm00001eb334790 Zea mays HOM05D006131 ORTHO05D008649 0.0e+00 1122.1 735 71.4
Lsat_1_v5_gn_4_61541 Lactuca sativa HOM05D006131 ORTHO05D008649 0.0e+00 1115.9 715 74.4
CARHR253090 Cardamine hirsuta HOM05D006131 ORTHO05D008649 0.0e+00 1115.5 706 74.6
vmacro03670 Vaccinium macrocarpon HOM05D006131 ORTHO05D008649 0.0e+00 1104.4 771 70.3
Sc17g0007540 Simmondsia chinensis HOM05D006131 ORTHO05D008649 0.0e+00 1089.7 615 83.6
ECA234G4389 Erigeron canadensis HOM05D000006 ORTHO05D000091 0.0e+00 1078.9 711 73.7
MELO3C007414.2 Cucumis melo HOM05D006131 ORTHO05D008649 0.0e+00 1075.5 659 77.5
COL.COLO4_31819 Corchorus olitorius HOM05D006131 ORTHO05D008649 1.0e-302 1043.1 756 68.7
Atru.chr10.2271 Acer truncatum HOM05D000321 ORTHO05D008649 2.5e-301 1038.5 681 74.7
BcaB01g02598 Brassica carinata HOM05D006131 ORTHO05D008649 1.8e-299 1032.3 700 72.0
Pp3c7_13710 Physcomitrium patens HOM05D006131 ORTHO05D008649 2.6e-298 1028.5 730 67.1
Mapoly0024s0038 Marchantia polymorpha HOM05D006131 ORTHO05D008649 2.7e-295 1018.5 729 65.2
AagrBONN_evm.TU.Sc2ySwM_362.2691 Anthoceros agrestis HOM05D006131 ORTHO05D008649 2.3e-294 1015.4 707 68.5
SGA_v2.0_scaffold7G03775 Striga asiatica HOM05D006131 ORTHO05D008649 3.9e-294 1014.6 746 67.2
unitig_748.g7594 Utricularia gibba HOM05D006131 ORTHO05D008649 2.5e-293 1011.9 750 66.9
Thecc.06G226400 Theobroma cacao HOM05D006131 ORTHO05D008649 5.7e-285 984.2 737 67.4
Phvul.003G081300 Phaseolus vulgaris HOM05D006131 ORTHO05D008649 1.6e-279 966.1 589 78.1
HPP92_003825 Vanilla planifolia HOM05D006131 ORTHO05D008649 5.0e-273 944.5 659 69.0
CAN.G1014.35 Capsicum annuum HOM05D006131 ORTHO05D008649 5.5e-256 887.9 551 77.7
PRCOL_00006602 Prasinoderma coloniale HOM05D006131 ORTHO05D008649 9.5e-256 887.1 743 59.4
Cre13.g578451 Chlamydomonas reinhardtii HOM05D006131 ORTHO05D008649 3.1e-251 872.1 737 58.6
MCO01G222 Micromonas commoda HOM05D006131 ORTHO05D008649 8.9e-238 827.4 734 55.7
CSS0007614 Camellia sinensis var. sinensis HOM05D006131 ORTHO05D008649 2.4e-206 723.0 555 65.0
Glyma.17G010750 Glycine max HOM05D006131 ORTHO05D008649 2.6e-189 666.4 472 70.6
MBI07_g07142_MAGBIO Magnolia biondii HOM05D006131 ORTHO05D008649 1.1e-187 661.0 401 76.3
CDE04G1529 Ceratophyllum demersum HOM05D006131 ORTHO05D008649 1.1e-184 651.0 409 74.6
CBR_g51980 Chara braunii HOM05D006131 ORTHO05D008649 7.7e-181 638.3 547 56.1
Aqoxy2G02318 Aquilegia oxysepala HOM05D006131 ORTHO05D008649 1.4e-174 617.5 377 77.7
SEGI_37859 Sequoiadendron giganteum HOM05D006131 ORTHO05D008649 8.0e-154 548.5 363 72.7
Lj1A1234T51 Lonicera japonica HOM05D006131 ORTHO05D008649 1.3e-148 531.2 681 47.4
Dinv20096 Davidia involucrata HOM05D006131 ORTHO05D008649 2.1e-146 523.9 307 82.4
Nitab4.5_0004743g0060 Nicotiana tabacum HOM05D006131 ORTHO05D008649 1.0e-132 478.4 372 66.7
Aqoxy1G02886 Aquilegia oxysepala HOM05D006131 ORTHO05D008649 1.9e-131 474.2 302 73.8
MD05G1351100 Malus domestica HOM05D006131 ORTHO05D008649 1.9e-131 474.2 557 48.7
ATR0317G090 Amborella trichopoda HOM05D006131 ORTHO05D021223 6.4e-111 406.0 298 65.8
CDE04G0704 Ceratophyllum demersum HOM05D006131 ORTHO05D008649 7.1e-102 375.9 243 73.7
Cfa023421 Carpinus fangiana HOM05D006131 ORTHO05D123919 6.4e-87 326.2 736 34.1
CAN.G1014.36 Capsicum annuum HOM05D006131 ORTHO05D008649 6.9e-81 306.2 205 74.1
Aqoxy144s008 Aquilegia oxysepala HOM05D006131 ORTHO05D077905 1.1e-73 282.3 561 34.0
SEGI_30887 Sequoiadendron giganteum HOM05D006131 ORTHO05D008649 8.2e-66 256.1 177 66.1
ATR0317G081 Amborella trichopoda HOM05D006131 ORTHO05D064775 5.0e-47 193.7 156 64.1
MD05G1351000 Malus domestica HOM05D006131 ORTHO05D021223 4.7e-45 187.2 116 78.4
A03p29990 Brassica napus HOM05D006131 ORTHO05D021223 2.4e-41 174.9 131 67.2
Oeu051886.1 Olea europaea HOM05D006131 ORTHO05D021223 2.7e-40 171.4 370 33.8
SEGI_22271 Sequoiadendron giganteum HOM05D006131 ORTHO05D021223 2.8e-21 108.2 73 65.8
PRCOL_00006335 Prasinoderma coloniale HOM05D001392 ORTHO05D006407 3.0e-15 88.2 673 22.1
Aqoxy1G02884 Aquilegia oxysepala HOM05D006131 ORTHO05D078484 1.1e-14 86.3 47 76.6
Cre07.g350500 Chlamydomonas reinhardtii HOM05D001392 ORTHO05D006407 1.8e-12 79.0 655 20.2
SalBow1G5129 Salvia bowleyana HOM05D002199 ORTHO05D016797 5.2e-12 77.4 48 70.8
SalBow1G8368 Salvia bowleyana HOM05D002199 ORTHO05D016797 5.2e-12 77.4 48 70.8
SalBow2G3407 Salvia bowleyana HOM05D006131 ORTHO05D016797 5.2e-12 77.4 48 70.8
SalBow3G3473 Salvia bowleyana HOM05D002199 ORTHO05D016797 5.2e-12 77.4 48 70.8
SEGI_08904 Sequoiadendron giganteum HOM05D006131 ORTHO05D021223 6.8e-12 77.0 75 49.3
SalBow6G4614 Salvia bowleyana HOM05D006131 ORTHO05D016797 1.2e-11 76.3 52 67.3
SalBow6G1083 Salvia bowleyana HOM05D006131 ORTHO05D016797 3.4e-11 74.7 56 62.5
SalBow1G1795 Salvia bowleyana HOM05D002199 ORTHO05D016797 4.4e-11 74.3 48 68.8
SalBow1G4554 Salvia bowleyana HOM05D002199 ORTHO05D016797 4.4e-11 74.3 48 68.8
SalBow4G0667 Salvia bowleyana HOM05D002199 ORTHO05D016797 4.4e-11 74.3 48 68.8
AagrBONN_evm.TU.Sc2ySwM_340.179 Anthoceros agrestis HOM05D001780 ORTHO05D005322 1.4e-09 69.3 543 22.7
Lsat_1_v5_gn_3_65141 Lactuca sativa HOM05D001392 ORTHO05D006407 1.6e-08 65.9 650 21.5


User provided reference genes

Program Settings