Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62021147 Chenopodium quinoa HOM05D004739 ORTHO05D005784 0.0e+00 1922.5 970 100.0
AUR62031390 Chenopodium quinoa HOM05D004739 ORTHO05D005784 0.0e+00 1757.3 973 92.2
Ah.07g206800 Amaranthus hybridus HOM05D004739 ORTHO05D005784 0.0e+00 1436.4 974 75.2
EL10Ac3g05589 Beta vulgaris HOM05D004739 ORTHO05D005784 0.0e+00 1331.6 895 75.4
Hund11729 Selenicereus undatus HOM05D004739 ORTHO05D005784 0.0e+00 1269.2 987 66.3
Sc13g0008930 Simmondsia chinensis HOM05D004739 ORTHO05D005784 0.0e+00 1122.8 992 59.9
RcHm_v2.0_Chr4g0410481 Rosa chinensis HOM05D004739 ORTHO05D005784 6.6e-312 1073.5 967 58.2
TAR365G0018 Trochodendron aralioides HOM05D004739 ORTHO05D005784 8.6e-310 1067.0 980 56.3
GSVIVG01031656001 Vitis vinifera HOM05D004739 ORTHO05D005784 2.8e-308 1062.0 977 57.8
Potri.002G233800 Populus trichocarpa HOM05D004739 ORTHO05D005784 1.1e-304 1050.0 1021 55.3
FvH4_4g12370 Fragaria vesca HOM05D004739 ORTHO05D005784 5.9e-303 1044.3 998 55.5
FAN07G0434 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.3e-302 1043.1 973 56.8
FAN12G0062 Fragaria x ananassa HOM05D004739 ORTHO05D005784 8.6e-302 1040.4 968 56.7
Aqoxy2G04008 Aquilegia oxysepala HOM05D004739 ORTHO05D005784 2.8e-300 1035.4 966 55.8
COL.COLO4_08079 Corchorus olitorius HOM05D004739 ORTHO05D005784 6.1e-300 1034.2 1018 53.5
Sabra02G0178500 Salix brachista HOM05D004739 ORTHO05D005784 6.1e-300 1034.2 1018 54.5
Manes.05G194701 Manihot esculenta HOM05D004739 ORTHO05D005784 1.2e-298 1030.0 980 55.5
FAN12G0551 Fragaria x ananassa HOM05D004739 ORTHO05D005784 2.6e-298 1028.9 998 55.1
TWI73G0948 Tripterygium wilfordii HOM05D004739 ORTHO05D005784 1.7e-297 1026.2 921 56.7
Thecc.04G186700 Theobroma cacao HOM05D004739 ORTHO05D005784 6.4e-297 1024.2 903 57.5
Gorai.005G127900 Gossypium raimondii HOM05D004739 ORTHO05D005784 9.2e-296 1020.4 970 56.2
CANSAT78G1796 Cannabis sativa HOM05D004739 ORTHO05D005784 1.6e-295 1019.6 987 54.7
Duzib212G0770 Durio zibethinus HOM05D004739 ORTHO05D005784 1.0e-294 1016.9 984 55.2
Eucgr.H00464 Eucalyptus grandis HOM05D004739 ORTHO05D005784 6.6e-294 1014.2 978 54.6
MELO3C022216.2 Cucumis melo HOM05D004739 ORTHO05D005784 1.5e-290 1003.0 978 53.7
CsaV3_5G040440 Cucumis sativus L. HOM05D004739 ORTHO05D005784 7.5e-290 1000.7 974 54.4
Ciclev10004261m.g Citrus clementina HOM05D004739 ORTHO05D005784 6.4e-289 997.7 963 54.0
CSS0046373 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 1.1e-288 996.9 973 55.5
Lalb_Chr10g0092061 Lupinus albus HOM05D004739 ORTHO05D005784 1.3e-286 989.9 975 53.9
vmacro15619 Vaccinium macrocarpon HOM05D004739 ORTHO05D005784 1.7e-286 989.6 936 55.0
HanXRQChr07g0204631 Helianthus annuus HOM05D004739 ORTHO05D005784 2.3e-286 989.2 968 54.6
Hma1.2p1_1286F.1_g273220 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 3.9e-286 988.4 743 64.7
QL06p027729 Quercus lobata HOM05D004739 ORTHO05D005784 4.3e-285 984.9 1052 51.3
Lj6A353T83 Lonicera japonica HOM05D004739 ORTHO05D005784 1.4e-283 979.9 987 53.5
Gohir.D02G113000 Gossypium hirsutum HOM05D004739 ORTHO05D005784 2.3e-283 979.2 970 54.5
MSTRG.24599 Avicennia marina HOM05D004739 ORTHO05D005784 1.5e-282 976.5 971 53.6
PSO017G5363 Papaver somniferum HOM05D004739 ORTHO05D005784 7.1e-280 967.6 979 51.4
arahy.Tifrunner.gnm1.ann1.F9LJYJ Arachis hypogaea HOM05D004739 ORTHO05D005784 9.2e-280 967.2 906 55.5
PSO675G2609 Papaver somniferum HOM05D004739 ORTHO05D005784 9.2e-280 967.2 979 51.2
SalBow3G0652 Salvia bowleyana HOM05D004739 ORTHO05D005784 2.1e-279 966.1 989 51.9
Medtr7g022220 Medicago truncatula HOM05D004739 ORTHO05D005784 4.6e-279 964.9 980 53.2
Lsat_1_v5_gn_1_69581 Lactuca sativa HOM05D004739 ORTHO05D005784 1.3e-278 963.4 967 52.5
Sopen09g036290 Solanum pennellii HOM05D004739 ORTHO05D005784 1.6e-276 956.4 1006 50.7
ECA248G0146 Erigeron canadensis HOM05D004739 ORTHO05D005784 3.6e-276 955.3 961 52.5
Solyc09g098370.4 Solanum lycopersicum HOM05D004739 ORTHO05D005784 6.2e-276 954.5 1006 50.8
Sed0003398 Sechium edule HOM05D004739 ORTHO05D005784 1.4e-275 953.4 970 53.6
Psat3g188160 Pisum sativum HOM05D004739 ORTHO05D005784 7.6e-274 947.6 974 52.9
Lj1g0022138 Lotus japonicus HOM05D004739 ORTHO05D005784 6.4e-273 944.5 929 54.0
Actinidia38940 Actinidia chinensis HOM05D004739 ORTHO05D005784 1.4e-272 943.3 977 51.9
FAN22G0233 Fragaria x ananassa HOM05D004739 ORTHO05D005784 4.6e-271 938.3 967 53.2
Migut.N00187 Erythranthe guttata HOM05D004739 ORTHO05D005784 7.8e-271 937.6 920 53.8
Cc03_g10760 Coffea canephora HOM05D004739 ORTHO05D005784 2.8e-268 929.1 756 61.1
Phvul.008G017600 Phaseolus vulgaris HOM05D004739 ORTHO05D005784 8.1e-268 927.5 980 51.7
Lj6C358T14 Lonicera japonica HOM05D004739 ORTHO05D005784 1.1e-267 927.2 899 54.2
DCAR_023801 Daucus carota HOM05D004739 ORTHO05D005784 9.0e-267 924.1 970 51.2
arahy.Tifrunner.gnm1.ann1.WHDV72 Arachis hypogaea HOM05D004739 ORTHO05D005784 1.2e-266 923.7 906 54.0
Peaxi162Scf00286g00338 Petunia axillaris HOM05D004739 ORTHO05D005784 1.3e-265 920.2 1016 49.0
THA.LOC104805833 Tarenaya hassleriana HOM05D004739 ORTHO05D005784 4.9e-265 918.3 966 50.6
ATR1145G086 Amborella trichopoda HOM05D004739 ORTHO05D005784 6.4e-265 917.9 991 50.4
Oeu006039.1 Olea europaea HOM05D004739 ORTHO05D005784 4.6e-263 911.8 936 51.6
Glyma.18G283900 Glycine max HOM05D004739 ORTHO05D005784 9.6e-261 904.0 975 51.5
Nitab4.5_0007057g0010 Nicotiana tabacum HOM05D004739 ORTHO05D005784 1.2e-258 897.1 1018 48.8
SGA_v2.0_scaffold550G52871 Striga asiatica HOM05D004739 ORTHO05D005784 8.4e-257 891.0 995 50.2
PGR142G4233 Punica granatum HOM05D004739 ORTHO05D005784 4.2e-256 888.6 976 50.2
HPP92_024268 Vanilla planifolia HOM05D004739 ORTHO05D005784 8.7e-254 880.9 972 49.2
VMungo1383G1195 Vigna mungo HOM05D004739 ORTHO05D005784 3.3e-253 879.0 977 50.1
ClCG08G000320 Citrullus lanatus HOM05D004739 ORTHO05D005784 4.3e-253 878.6 689 62.8
Os06g0171800 Oryza sativa ssp. japonica HOM05D004739 ORTHO05D005784 7.6e-250 867.8 977 48.7
Zm00001eb375390 Zea mays HOM05D004739 ORTHO05D005784 2.5e-245 852.8 966 47.8
Sp1g35310 Schrenkiella parvula HOM05D004739 ORTHO05D005784 9.6e-245 850.9 973 48.8
Carub.0001s3748 Capsella rubella HOM05D004739 ORTHO05D005784 2.6e-242 842.8 981 48.7
AL1G54960 Arabidopsis lyrata HOM05D004739 ORTHO05D005784 2.9e-241 839.3 976 48.7
Aa31LG10G5400 Aethionema arabicum HOM05D004739 ORTHO05D005784 8.4e-241 837.8 976 48.5
Thhalv10011221m.g Eutrema salsugineum HOM05D004739 ORTHO05D005784 9.3e-240 834.3 1004 47.8
A08p04770 Brassica napus HOM05D004739 ORTHO05D005784 1.1e-237 827.4 983 47.2
C08p05140 Brassica napus HOM05D004739 ORTHO05D005784 1.6e-236 823.5 986 47.4
BolC8t47324H Brassica oleracea HOM05D004739 ORTHO05D005784 1.6e-236 823.5 987 47.7
BraA08t32506Z Brassica rapa HOM05D004739 ORTHO05D005784 3.7e-236 822.4 1026 45.8
HPP92_024254 Vanilla planifolia HOM05D004739 ORTHO05D005784 3.7e-236 822.4 972 47.3
BcaC07g37141 Brassica carinata HOM05D004739 ORTHO05D005784 4.8e-236 822.0 1002 46.9
Nitab4.5_0008073g0020 Nicotiana tabacum HOM05D004739 ORTHO05D005784 1.1e-235 820.8 999 46.3
Rhsim02G0071300 Rhododendron simsii HOM05D004739 ORTHO05D005784 6.9e-235 818.1 938 48.7
Cpa.g.sc8.308 Carica papaya HOM05D004739 ORTHO05D005784 9.4e-232 807.7 976 46.8
CiPaw.01G109700 Carya illinoinensis HOM05D004739 ORTHO05D005784 6.9e-227 791.6 841 50.9
Ca_07125_v3 Cicer arietinum L. HOM05D004739 ORTHO05D005784 2.5e-224 783.1 701 56.9
Hma1.2p1_1286F.1_g273230 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 7.2e-216 755.0 525 69.5
MBI11_g12232_MAGBIO Magnolia biondii HOM05D004739 ORTHO05D005784 1.4e-214 750.7 570 64.0
CDE02G3320 Ceratophyllum demersum HOM05D004739 ORTHO05D005784 4.2e-208 729.2 991 44.2
CAN.G710.49 Capsicum annuum HOM05D004739 ORTHO05D005784 4.7e-207 725.7 553 64.0
Atru.BG.162.p Acer truncatum HOM05D004739 ORTHO05D005784 1.4e-203 714.1 463 72.6
MD09G1250400 Malus domestica HOM05D004739 ORTHO05D005784 3.8e-193 679.5 483 69.8
BcaB04g17436 Brassica carinata HOM05D004739 ORTHO05D005784 1.1e-192 677.9 974 42.4
AagrBONN_evm.TU.Sc2ySwM_344.4128 Anthoceros agrestis HOM05D004739 ORTHO05D002352 1.5e-192 677.6 1048 40.4
Prupe.1G176700 Prunus persica HOM05D004739 ORTHO05D005784 5.6e-192 675.6 752 49.9
AT1G48360 Arabidopsis thaliana HOM05D004739 ORTHO05D005784 3.1e-182 643.3 829 46.2
Gohir.A03G095900 Gossypium hirsutum HOM05D004739 ORTHO05D005784 4.0e-182 642.9 748 49.2
Pp3c5_2670 Physcomitrium patens HOM05D004739 ORTHO05D005784 3.4e-181 639.8 1148 36.0
Mapoly0005s0042 Marchantia polymorpha HOM05D004739 ORTHO05D005784 5.8e-181 639.0 893 41.1
SMO203G0018 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.1e-179 634.8 979 40.4
SMO331G0089 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.5e-168 597.8 723 46.1
SEGI_11980 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 4.7e-167 592.8 602 52.5
unitig_8.g4743 Utricularia gibba HOM05D004739 ORTHO05D003440 3.5e-162 576.6 1038 37.8
SMO327G0027 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.3e-161 573.9 737 44.2
SMO327G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.4e-150 538.1 766 41.8
SMO331G0087 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.3e-140 505.0 480 53.1
Dinv31047 Davidia involucrata HOM05D004739 ORTHO05D005784 3.2e-139 500.4 444 58.1
Dinv31053 Davidia involucrata HOM05D004739 ORTHO05D005784 3.2e-139 500.4 444 58.1
TPR.G22177 Trifolium pratense HOM05D004739 ORTHO05D005784 1.3e-137 495.0 313 74.1
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 9.6e-136 488.8 736 39.3
MD00G1163900 Malus domestica HOM05D004739 ORTHO05D005784 1.1e-134 485.3 278 80.6
SMO327G0008 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 6.9e-134 482.6 597 46.4
SMO110G0011 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 4.5e-125 453.4 618 44.2
Glyma.08G259832 Glycine max HOM05D004739 ORTHO05D005784 1.9e-115 421.4 360 58.1
CARHR037970 Cardamine hirsuta HOM05D004739 ORTHO05D005784 3.7e-103 380.6 643 39.7
CSS0028447 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 5.5e-99 366.7 314 58.6
SMO252G0014 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.0e-97 362.5 767 32.3
Dinv31052 Davidia involucrata HOM05D004739 ORTHO05D005784 7.0e-94 349.7 495 45.1
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 7.2e-91 339.7 634 36.8
SMO110G0002 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 9.4e-91 339.3 786 33.6
Cre16.g660350 Chlamydomonas reinhardtii HOM05D004739 ORTHO05D005784 3.8e-84 317.4 406 42.9
TAR365G0620 Trochodendron aralioides HOM05D004739 ORTHO05D005784 6.5e-84 316.6 453 42.4
PRCOL_00003987 Prasinoderma coloniale HOM05D004739 ORTHO05D005784 1.0e-73 282.7 658 31.0
TPR.G2930 Trifolium pratense HOM05D004739 ORTHO05D005784 1.1e-70 272.7 417 41.2
PGSC0003DMG400021624 Solanum tuberosum HOM05D004739 ORTHO05D005784 4.1e-70 270.8 159 74.8
SHI06489 Sapria himalayana HOM05D004739 ORTHO05D000023 1.0e-68 266.2 503 35.4
CBR_g39432 Chara braunii HOM05D004739 ORTHO05D005784 2.3e-68 265.0 271 51.3
Haze_11712 Corylus avellana HOM05D004739 ORTHO05D005784 3.4e-64 251.1 139 82.0
MD09G1250200 Malus domestica HOM05D004739 ORTHO05D005784 4.9e-63 247.3 419 39.4
Cfa022531 Carpinus fangiana HOM05D004739 ORTHO05D121730 1.7e-52 212.2 727 27.6
SMO252G0017 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.5e-51 209.1 190 52.6
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 4.0e-49 201.1 379 36.4
Cfa015247 Carpinus fangiana HOM05D004739 ORTHO05D005784 6.8e-49 200.3 117 79.5
FAN17G2248 Fragaria x ananassa HOM05D004739 ORTHO05D005784 4.6e-45 187.6 164 59.1
SMO331G0063 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 4.6e-45 187.6 159 54.1
MCO01G753 Micromonas commoda HOM05D004739 ORTHO05D005784 1.1e-43 183.0 764 25.3
TPR.G2943 Trifolium pratense HOM05D004739 ORTHO05D005784 2.4e-41 175.3 197 48.2
Actinidia34750 Actinidia chinensis HOM05D004739 ORTHO05D005784 5.2e-41 174.1 111 73.0
Lj6A353T82 Lonicera japonica HOM05D004739 ORTHO05D005784 8.4e-39 166.8 105 77.1
CSS0043638 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 2.7e-37 161.8 154 54.5
SEGI_19061 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 2.3e-36 158.7 544 28.5
CBR_g7993 Chara braunii HOM05D004739 ORTHO05D005784 9.6e-35 153.3 269 33.5
Glyma.16G127800 Glycine max HOM05D004739 ORTHO05D005784 1.9e-30 139.0 89 70.8
ClCG08G000310 Citrullus lanatus HOM05D004739 ORTHO05D005784 6.7e-28 130.6 275 37.1
Lj6P350T22 Lonicera japonica HOM05D004739 ORTHO05D005784 1.6e-26 125.9 155 45.8
SMO331G0066 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.8e-25 122.5 436 28.2
CSS0002286 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 4.0e-25 121.3 85 70.6
Zm00001eb188730 Zea mays HOM05D004739 ORTHO05D005784 6.9e-25 120.6 86 67.4
Zm00001eb188740 Zea mays HOM05D004739 ORTHO05D005784 4.5e-24 117.9 84 70.2
EL10Ac3g05590 Beta vulgaris HOM05D004739 ORTHO05D005784 9.9e-24 116.7 94 67.0
CAN.G1076.10 Capsicum annuum HOM05D004739 ORTHO05D005784 7.4e-19 100.5 84 58.3
Glyma.08G259766 Glycine max HOM05D004739 ORTHO05D005784 3.5e-13 81.6 111 42.3
BolC1t05400H Brassica oleracea HOM05D000493 ORTHO05D001355 2.2e-10 72.4 63 52.4
CSS0015609 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 6.3e-10 70.9 179 35.2
Cc03_g10750 Coffea canephora HOM05D004739 ORTHO05D005784 8.2e-10 70.5 103 42.7
SMO110G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 4.5e-08 64.7 71 47.9
Lj6P352T60 Lonicera japonica HOM05D004739 ORTHO05D005784 6.5e-07 60.8 73 43.8


User provided reference genes

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