Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62020986 Chenopodium quinoa HOM05D005962 ORTHO05D007325 6.8e-142 507.3 254 100.0
AUR62018448 Chenopodium quinoa HOM05D005962 ORTHO05D007325 3.1e-134 481.9 254 96.1
EL10Ac3g07358 Beta vulgaris HOM05D005962 ORTHO05D007325 4.8e-127 458.0 254 88.6
TAR623G1297 Trochodendron aralioides HOM05D005962 ORTHO05D007325 3.4e-101 372.1 260 75.0
CANSAT21G1984 Cannabis sativa HOM05D005962 ORTHO05D007325 1.0e-100 370.5 253 73.1
Nn4g25123 Nelumbo nucifera HOM05D005962 ORTHO05D007325 1.0e-100 370.5 253 73.1
Ciclev10026335m.g Citrus clementina HOM05D005962 ORTHO05D007325 1.7e-100 369.8 251 76.5
TWI12G1051 Tripterygium wilfordii HOM05D005962 ORTHO05D007325 6.5e-100 367.9 255 74.1
Sabra17G0126400 Salix brachista HOM05D005962 ORTHO05D007325 1.4e-99 366.7 260 73.1
DCAR_007600 Daucus carota HOM05D005962 ORTHO05D007325 2.5e-99 365.9 259 72.6
Manes.04G136400 Manihot esculenta HOM05D005962 ORTHO05D007325 4.2e-99 365.2 246 74.4
vmacro18833 Vaccinium macrocarpon HOM05D005962 ORTHO05D007325 9.4e-99 364.0 258 71.7
Manes.11G030300 Manihot esculenta HOM05D005962 ORTHO05D007325 1.2e-98 363.6 246 72.8
Sc19g0007830 Simmondsia chinensis HOM05D005962 ORTHO05D007325 1.2e-98 363.6 262 72.5
Haze_15888 Corylus avellana HOM05D005962 ORTHO05D007325 2.1e-98 362.8 252 73.0
Actinidia32123 Actinidia chinensis HOM05D005962 ORTHO05D007325 3.6e-98 362.1 254 73.2
Rhsim08G0229500 Rhododendron simsii HOM05D005962 ORTHO05D007325 3.6e-98 362.1 258 72.1
Phvul.010G143300 Phaseolus vulgaris HOM05D005962 ORTHO05D007325 6.1e-98 361.3 247 75.3
CiPaw.02G144100 Carya illinoinensis HOM05D005962 ORTHO05D007325 3.9e-97 358.6 250 73.6
Oeu024256.1 Olea europaea HOM05D005962 ORTHO05D007325 5.1e-97 358.2 263 70.7
VMungo0331G0822 Vigna mungo HOM05D005962 ORTHO05D007325 5.1e-97 358.2 250 74.4
Lsat_1_v5_gn_5_181040 Lactuca sativa HOM05D005962 ORTHO05D007325 6.7e-97 357.8 249 74.7
Atru.chr12.732 Acer truncatum HOM05D005962 ORTHO05D007325 1.1e-96 357.1 250 74.4
ECA248G1573 Erigeron canadensis HOM05D005962 ORTHO05D007325 1.1e-96 357.1 251 74.9
arahy.Tifrunner.gnm1.ann1.FEFU12 Arachis hypogaea HOM05D005962 ORTHO05D007325 1.5e-96 356.7 246 74.8
Psat4g195960 Pisum sativum HOM05D005962 ORTHO05D007325 2.0e-96 356.3 247 74.1
COL.COLO4_30547 Corchorus olitorius HOM05D005962 ORTHO05D007325 9.7e-96 354.0 258 68.6
Solyc12g044640.2 Solanum lycopersicum HOM05D005962 ORTHO05D007325 9.7e-96 354.0 255 71.4
PGSC0003DMG401002516 Solanum tuberosum HOM05D005962 ORTHO05D007325 9.7e-96 354.0 255 71.4
Glyma.08G199200 Glycine max HOM05D005962 ORTHO05D007325 2.2e-95 352.8 247 74.5
QL08p056642 Quercus lobata HOM05D005962 ORTHO05D007325 3.7e-95 352.1 252 71.4
Thecc.06G103400 Theobroma cacao HOM05D005962 ORTHO05D007325 6.3e-95 351.3 258 70.9
Gohir.D01G215700 Gossypium hirsutum HOM05D005962 ORTHO05D007325 1.1e-94 350.5 253 70.4
PSO210G7608 Papaver somniferum HOM05D005962 ORTHO05D007325 1.1e-94 350.5 257 69.6
Eucgr.J02602 Eucalyptus grandis HOM05D005962 ORTHO05D007325 1.4e-94 350.1 256 71.5
Lj3g0005277 Lotus japonicus HOM05D005962 ORTHO05D007325 1.4e-94 350.1 245 73.5
Sed0025844 Sechium edule HOM05D005962 ORTHO05D007325 3.1e-94 349.0 253 71.1
CsaV3_3G023410 Cucumis sativus L. HOM05D005962 ORTHO05D007325 4.1e-94 348.6 250 71.6
PSO210G0258 Papaver somniferum HOM05D005962 ORTHO05D007325 5.3e-94 348.2 256 69.9
Hma1.2p1_0764F.1_g214960 Hydrangea macrophylla HOM05D005962 ORTHO05D007325 6.9e-94 347.8 249 70.7
Peaxi162Scf00038g01151 Petunia axillaris HOM05D005962 ORTHO05D007325 9.1e-94 347.4 252 71.8
Cc00_g23930 Coffea canephora HOM05D005962 ORTHO05D007325 2.0e-93 346.3 254 70.5
Prupe.3G054900 Prunus persica HOM05D005962 ORTHO05D007325 2.0e-93 346.3 252 71.0
Hma1.2p1_2308F.1_g319480 Hydrangea macrophylla HOM05D005962 ORTHO05D007325 2.6e-93 345.9 249 70.3
Rhsim08G0229700 Rhododendron simsii HOM05D005962 ORTHO05D007325 3.4e-93 345.5 271 67.5
arahy.Tifrunner.gnm1.ann1.M52QXX Arachis hypogaea HOM05D005962 ORTHO05D007325 4.5e-93 345.1 230 76.5
Aqoxy2G04031 Aquilegia oxysepala HOM05D005962 ORTHO05D007325 5.9e-93 344.7 266 69.9
MBI01_g35895_MAGBIO Magnolia biondii HOM05D005962 ORTHO05D007325 5.9e-93 344.7 258 69.4
MSTRG.11013 Avicennia marina HOM05D005962 ORTHO05D007325 7.7e-93 344.4 248 71.0
ClCG07G013490 Citrullus lanatus HOM05D005962 ORTHO05D007325 1.3e-92 343.6 250 70.8
Os06g0217500 Oryza sativa ssp. japonica HOM05D005962 ORTHO05D007325 2.2e-92 342.8 255 68.6
Dinv37956 Davidia involucrata HOM05D005962 ORTHO05D007325 6.5e-92 341.3 222 75.7
Gorai.002G261900 Gossypium raimondii HOM05D005962 ORTHO05D007325 6.5e-92 341.3 253 69.2
PGR102G2175 Punica granatum HOM05D005962 ORTHO05D007325 8.5e-92 340.9 237 71.3
CSS0027495 Camellia sinensis var. sinensis HOM05D005962 ORTHO05D007325 1.4e-91 340.1 226 76.1
Gohir.A10G063800 Gossypium hirsutum HOM05D005962 ORTHO05D007325 1.4e-91 340.1 243 70.0
Gohir.D10G065400 Gossypium hirsutum HOM05D005962 ORTHO05D007325 1.9e-91 339.7 243 71.2
Lalb_Chr01g0013231 Lupinus albus HOM05D005962 ORTHO05D007325 1.9e-91 339.7 247 70.4
Medtr8g015230 Medicago truncatula HOM05D005962 ORTHO05D007325 2.5e-91 339.3 247 71.7
PGSC0003DMG400026839 Solanum tuberosum HOM05D005962 ORTHO05D007325 2.5e-91 339.3 255 69.0
CAN.G1143.30 Capsicum annuum HOM05D005962 ORTHO05D007325 3.2e-91 339.0 236 72.0
Sopen12g023060 Solanum pennellii HOM05D005962 ORTHO05D007325 5.5e-91 338.2 255 69.0
Sopen03g040020 Solanum pennellii HOM05D005962 ORTHO05D007325 1.6e-90 336.7 255 69.4
Gorai.011G069400 Gossypium raimondii HOM05D005962 ORTHO05D007325 2.1e-90 336.3 232 73.3
Nitab4.5_0002423g0030 Nicotiana tabacum HOM05D005962 ORTHO05D007325 2.1e-90 336.3 255 69.0
Ca_23283_v3 Cicer arietinum L. HOM05D005962 ORTHO05D007325 2.7e-90 335.9 251 70.5
Duzib192G0276 Durio zibethinus HOM05D005962 ORTHO05D007325 6.1e-90 334.7 232 72.4
Migut.I00971 Erythranthe guttata HOM05D005962 ORTHO05D007325 7.9e-90 334.3 263 68.1
Nitab4.5_0001172g0180 Nicotiana tabacum HOM05D005962 ORTHO05D007325 1.8e-89 333.2 256 68.8
MELO3C013015.2 Cucumis melo HOM05D005962 ORTHO05D007325 5.1e-89 331.6 277 63.9
GSVIVG01016927001 Vitis vinifera HOM05D005962 ORTHO05D007325 5.1e-89 331.6 227 73.6
HPP92_007682 Vanilla planifolia HOM05D005962 ORTHO05D007325 8.8e-89 330.9 261 67.4
SalBow6G5073 Salvia bowleyana HOM05D005962 ORTHO05D007325 2.0e-88 329.7 229 72.1
HanXRQChr15g0489361 Helianthus annuus HOM05D005962 ORTHO05D007325 2.8e-87 325.9 246 69.5
FvH4_6g32730 Fragaria vesca HOM05D005962 ORTHO05D007325 2.4e-86 322.8 245 67.8
unitig_32.g10986 Utricularia gibba HOM05D005962 ORTHO05D007325 5.3e-86 321.6 263 65.0
Aa31LG8G8050 Aethionema arabicum HOM05D005962 ORTHO05D007325 7.0e-86 321.2 232 69.4
SHI11207 Sapria himalayana HOM05D005962 ORTHO05D007325 3.5e-85 318.9 255 64.7
CARHR097270 Cardamine hirsuta HOM05D005962 ORTHO05D007325 4.5e-85 318.5 238 67.2
RcHm_v2.0_Chr2g0141751 Rosa chinensis HOM05D005962 ORTHO05D007325 4.5e-85 318.5 245 66.9
FAN05G1114 Fragaria x ananassa HOM05D005962 ORTHO05D007325 1.0e-84 317.4 252 65.9
FAN02G1749 Fragaria x ananassa HOM05D005962 ORTHO05D007325 3.8e-84 315.5 245 65.7
Solyc03g121210.4 Solanum lycopersicum HOM05D005962 ORTHO05D007325 8.5e-84 314.3 213 74.2
AL3G35400 Arabidopsis lyrata HOM05D005962 ORTHO05D007325 1.5e-83 313.5 251 64.9
Ah.04g150140 Amaranthus hybridus HOM05D005962 ORTHO05D007325 4.2e-83 312.0 166 89.2
Carub.0003s2138 Capsella rubella HOM05D005962 ORTHO05D007325 5.5e-83 311.6 252 65.5
Sp3g19410 Schrenkiella parvula HOM05D005962 ORTHO05D007325 1.6e-82 310.1 252 65.9
FAN09G1055 Fragaria x ananassa HOM05D005962 ORTHO05D007325 1.0e-81 307.4 245 64.5
Zm00001eb372970 Zea mays HOM05D005962 ORTHO05D007325 1.4e-81 307.0 255 62.4
SGA_v2.0_scaffold45G16998 Striga asiatica HOM05D005962 ORTHO05D007325 1.5e-80 303.5 207 72.9
THA.LOC104805924 Tarenaya hassleriana HOM05D005962 ORTHO05D007325 3.3e-80 302.4 254 64.6
Thhalv10021373m.g Eutrema salsugineum HOM05D005962 ORTHO05D007325 4.8e-79 298.5 251 63.3
AT3G21350 Arabidopsis thaliana HOM05D005962 ORTHO05D007325 9.1e-78 294.3 252 62.3
BcaB06g26231 Brassica carinata HOM05D005962 ORTHO05D007325 1.7e-76 290.0 245 62.9
BcaC05g28175 Brassica carinata HOM05D005962 ORTHO05D007325 1.7e-76 290.0 237 64.1
A05p27250 Brassica napus HOM05D005962 ORTHO05D007325 3.8e-76 288.9 237 64.1
C05p42110 Brassica napus HOM05D005962 ORTHO05D007325 6.5e-76 288.1 237 63.7
Gohir.A01G226000 Gossypium hirsutum HOM05D005962 ORTHO05D007325 1.1e-75 287.3 199 72.9
BraA05t21615Z Brassica rapa HOM05D005962 ORTHO05D007325 1.5e-75 287.0 247 61.9
BolC5t32941H Brassica oleracea HOM05D005962 ORTHO05D007325 1.3e-71 273.9 274 55.1
Cpa.g.sc131.1 Carica papaya HOM05D005962 ORTHO05D007325 2.0e-69 266.5 162 81.5
ATR0705G221 Amborella trichopoda HOM05D005962 ORTHO05D007325 3.8e-68 262.3 170 77.1
Migut.O00801 Erythranthe guttata HOM05D005962 ORTHO05D007325 4.0e-65 252.3 171 73.7
Migut.I00969 Erythranthe guttata HOM05D005962 ORTHO05D007325 8.8e-65 251.1 171 73.7
TPR.G39766 Trifolium pratense HOM05D005962 ORTHO05D007325 7.5e-64 248.1 185 69.7
AagrBONN_evm.TU.Sc2ySwM_362.1658 Anthoceros agrestis HOM05D005962 ORTHO05D007325 3.8e-60 235.7 217 54.4
Pp3c11_22580 Physcomitrium patens HOM05D005962 ORTHO05D007325 1.1e-59 234.2 243 53.5
SMO143G0120 Selaginella moellendorffii HOM05D005962 ORTHO05D007325 1.6e-58 230.3 192 59.4
Mapoly0012s0176 Marchantia polymorpha HOM05D005962 ORTHO05D007325 2.3e-57 226.5 243 53.5
Cfa019373 Carpinus fangiana HOM05D005962 ORTHO05D007325 1.2e-56 224.2 170 68.2
Lj5A50T68 Lonicera japonica HOM05D005962 ORTHO05D007325 1.7e-52 210.3 171 66.1
MD14G1079700 Malus domestica HOM05D005962 ORTHO05D007325 2.0e-48 196.8 174 61.5
CBR_g22489 Chara braunii HOM05D005962 ORTHO05D007325 8.6e-44 181.4 246 43.5
Ah.04g150130 Amaranthus hybridus HOM05D000535 ORTHO05D000427 8.6e-36 154.8 95 84.2
Lj5C50T14 Lonicera japonica HOM05D005962 ORTHO05D007325 6.8e-33 145.2 88 79.5
Medtr0361s0030 Medicago truncatula HOM05D005962 ORTHO05D007325 2.6e-32 143.3 103 69.9
Lj3g0016976 Lotus japonicus HOM05D005962 ORTHO05D007325 1.1e-27 127.9 193 45.1
Lsat_1_v5_gn_2_99820 Lactuca sativa HOM05D005962 ORTHO05D007325 4.3e-27 125.9 84 73.8
Dinv30416 Davidia involucrata HOM05D005962 ORTHO05D007325 7.3e-27 125.2 214 40.2
QL05p018100 Quercus lobata HOM05D005962 ORTHO05D007325 9.6e-27 124.8 92 67.4
SEGI_18792 Sequoiadendron giganteum HOM05D005962 ORTHO05D007325 1.6e-26 124.0 80 73.8
Cfa019374 Carpinus fangiana HOM05D005962 ORTHO05D007325 8.1e-26 121.7 73 79.5
RcHm_v2.0_Chr5g0064381 Rosa chinensis HOM05D005962 ORTHO05D007325 2.3e-20 103.6 80 61.2
TAR623G1541 Trochodendron aralioides HOM05D005962 ORTHO05D007325 1.1e-17 94.7 58 79.3
Nitab4.5_0008212g0010 Nicotiana tabacum HOM05D005962 ORTHO05D007325 5.8e-16 89.0 198 36.9
Pp3c7_2870 Physcomitrium patens HOM05D005962 ORTHO05D007325 1.9e-14 84.0 208 34.1
TAR636G3265 Trochodendron aralioides HOM05D005962 ORTHO05D007325 3.2e-14 83.2 61 73.8
TAR624G0741 Trochodendron aralioides HOM05D005962 ORTHO05D007325 5.4e-14 82.4 145 40.0
Zm00001eb084330 Zea mays HOM05D005962 ORTHO05D007325 9.3e-14 81.6 59 64.4
Zm00001eb192830 Zea mays HOM05D005962 ORTHO05D007325 6.0e-13 79.0 58 62.1
GSVIVG01016925001 Vitis vinifera HOM05D000106 ORTHO05D000160 6.9e-09 65.5 42 66.7
BraA09t39590Z Brassica rapa HOM05D002393 ORTHO05D002845 9.9e-08 61.6 63 54.0
Cpa.g.c26718.1 Carica papaya HOM05D005962 ORTHO05D007325 1.7e-07 60.8 54 61.1
Dinv30417 Davidia involucrata HOM05D000106 ORTHO05D000160 1.9e-06 57.4 60 53.3


User provided reference genes

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