Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62019966 Chenopodium quinoa HOM05D005983 ORTHO05D007438 7.3e-253 876.7 433 100.0
AUR62007103 Chenopodium quinoa HOM05D005983 ORTHO05D007438 9.6e-245 849.7 431 96.5
EL10Ac5g12377 Beta vulgaris HOM05D005983 ORTHO05D007438 2.5e-200 702.2 495 72.7
Ah.12g054210 Amaranthus hybridus HOM05D005983 ORTHO05D007438 8.8e-182 640.6 446 73.5
Dinv21647 Davidia involucrata HOM05D005983 ORTHO05D007438 3.7e-172 608.6 428 68.9
Hund14571 Selenicereus undatus HOM05D005983 ORTHO05D007438 1.2e-167 593.6 439 70.6
Duzib084G0278 Durio zibethinus HOM05D005983 ORTHO05D007438 4.7e-159 565.1 452 64.2
Hma1.2p1_0316F.1_g122960 Hydrangea macrophylla HOM05D005983 ORTHO05D007438 1.8e-158 563.1 450 64.2
Thecc.03G249100 Theobroma cacao HOM05D005983 ORTHO05D007438 4.4e-157 558.5 452 64.2
GSVIVG01004724001 Vitis vinifera HOM05D005983 ORTHO05D007438 2.9e-156 555.8 451 63.4
CiPaw.11G080800 Carya illinoinensis HOM05D005983 ORTHO05D007438 6.4e-156 554.7 450 64.0
COL.COLO4_37146 Corchorus olitorius HOM05D005983 ORTHO05D007438 1.9e-155 553.1 421 67.0
CSS0015193 Camellia sinensis var. sinensis HOM05D005983 ORTHO05D007438 4.1e-155 552.0 451 61.0
CANSAT21G0098 Cannabis sativa HOM05D005983 ORTHO05D007438 5.4e-155 551.6 449 62.4
Eucgr.E00410 Eucalyptus grandis HOM05D005983 ORTHO05D007438 5.4e-155 551.6 454 63.2
MBI04_g09520_MAGBIO Magnolia biondii HOM05D005983 ORTHO05D007438 9.2e-155 550.8 448 60.3
Ciclev10020120m.g Citrus clementina HOM05D005983 ORTHO05D007438 1.2e-154 550.4 450 62.7
PGSC0003DMG402011882 Solanum tuberosum HOM05D005983 ORTHO05D007438 7.8e-154 547.7 449 62.1
Prupe.5G066800 Prunus persica HOM05D005983 ORTHO05D007438 1.0e-153 547.4 449 61.5
QL12p011684 Quercus lobata HOM05D005983 ORTHO05D007438 1.0e-153 547.4 472 60.0
TWI15G0813 Tripterygium wilfordii HOM05D005983 ORTHO05D007438 1.0e-153 547.4 449 62.6
Potri.003G078300 Populus trichocarpa HOM05D005983 ORTHO05D007438 2.3e-153 546.2 449 61.9
Solyc06g060780.4 Solanum lycopersicum HOM05D005983 ORTHO05D007438 2.3e-153 546.2 450 62.0
MELO3C005523.2 Cucumis melo HOM05D005983 ORTHO05D007438 3.0e-153 545.8 422 64.5
Gorai.003G172200 Gossypium raimondii HOM05D005983 ORTHO05D007438 1.9e-152 543.1 450 62.0
Cc08_g12250 Coffea canephora HOM05D005983 ORTHO05D007438 3.3e-152 542.3 427 65.6
Sopen06g020900 Solanum pennellii HOM05D005983 ORTHO05D007438 4.3e-152 542.0 450 61.3
Sabra03G0048600 Salix brachista HOM05D005983 ORTHO05D007438 1.2e-151 540.4 456 61.4
PGR042G2168 Punica granatum HOM05D005983 ORTHO05D007438 2.8e-151 539.3 453 61.1
CAN.G62.33 Capsicum annuum HOM05D005983 ORTHO05D007438 4.7e-151 538.5 450 61.8
Gohir.A03G007500 Gossypium hirsutum HOM05D005983 ORTHO05D007438 6.2e-151 538.1 450 61.8
Gohir.D03G163500 Gossypium hirsutum HOM05D005983 ORTHO05D007438 1.4e-150 537.0 424 63.9
Nn1g00952 Nelumbo nucifera HOM05D005983 ORTHO05D007438 1.8e-150 536.6 438 60.7
Glyma.01G207800 Glycine max HOM05D005983 ORTHO05D007438 2.3e-150 536.2 458 61.6
HanXRQChr16g0510961 Helianthus annuus HOM05D005983 ORTHO05D007438 3.1e-150 535.8 416 64.9
Peaxi162Scf01022g00324 Petunia axillaris HOM05D005983 ORTHO05D007438 3.1e-150 535.8 446 62.1
DCAR_004965 Daucus carota HOM05D005983 ORTHO05D007438 4.0e-150 535.4 452 61.1
RcHm_v2.0_Chr7g0203641 Rosa chinensis HOM05D005983 ORTHO05D007438 6.8e-150 534.6 449 61.2
FvH4_5g19150 Fragaria vesca HOM05D005983 ORTHO05D007438 8.9e-150 534.3 449 59.9
FAN18G0274 Fragaria x ananassa HOM05D005983 ORTHO05D007438 8.9e-150 534.3 449 59.9
MD06G1055900 Malus domestica HOM05D005983 ORTHO05D007438 8.9e-150 534.3 451 60.8
FAN08G1502 Fragaria x ananassa HOM05D005983 ORTHO05D007438 3.4e-149 532.3 449 59.7
FAN04G1995 Fragaria x ananassa HOM05D005983 ORTHO05D007438 5.8e-149 531.6 446 60.1
Lj2g0002324 Lotus japonicus HOM05D005983 ORTHO05D007438 5.8e-149 531.6 450 59.8
Sed0010070 Sechium edule HOM05D005983 ORTHO05D007438 7.5e-149 531.2 449 60.8
Migut.A01119 Erythranthe guttata HOM05D005983 ORTHO05D007438 2.9e-148 529.3 414 63.3
BcaC09g50403 Brassica carinata HOM05D005983 ORTHO05D007438 5.4e-147 525.0 418 62.9
C01p25880 Brassica napus HOM05D005983 ORTHO05D007438 5.4e-147 525.0 418 62.9
BolC1t02533H Brassica oleracea HOM05D005983 ORTHO05D007438 5.4e-147 525.0 418 62.9
Ca_24588_v3 Cicer arietinum L. HOM05D005983 ORTHO05D007438 7.1e-147 524.6 446 60.5
VMungo1215G0088 Vigna mungo HOM05D005983 ORTHO05D007438 1.2e-146 523.9 454 59.9
Medtr5g012880 Medicago truncatula HOM05D005983 ORTHO05D007438 2.7e-146 522.7 450 58.9
Phvul.002G057200 Phaseolus vulgaris HOM05D005983 ORTHO05D007438 2.7e-146 522.7 439 60.4
Sed0018188 Sechium edule HOM05D005983 ORTHO05D007438 2.7e-146 522.7 448 59.4
Lalb_Chr05g0214371 Lupinus albus HOM05D005983 ORTHO05D007438 3.5e-146 522.3 455 59.6
A01p20580 Brassica napus HOM05D005983 ORTHO05D007438 4.6e-146 521.9 418 62.4
BraA01t01986Z Brassica rapa HOM05D005983 ORTHO05D007438 6.0e-146 521.5 418 62.4
Psat2g176840 Pisum sativum HOM05D005983 ORTHO05D007438 7.8e-146 521.2 438 60.5
SalBow6G6019 Salvia bowleyana HOM05D005983 ORTHO05D007438 7.8e-146 521.2 434 60.8
Aa31LG2G12890 Aethionema arabicum HOM05D005983 ORTHO05D007438 1.0e-145 520.8 418 62.7
ECA233G1798 Erigeron canadensis HOM05D005983 ORTHO05D007438 1.0e-145 520.8 392 64.5
AT4G16700 Arabidopsis thaliana HOM05D005983 ORTHO05D007438 3.0e-145 519.2 455 59.3
arahy.Tifrunner.gnm1.ann1.NE97L5 Arachis hypogaea HOM05D005983 ORTHO05D007438 6.6e-145 518.1 455 58.7
AL7G38030 Arabidopsis lyrata HOM05D005983 ORTHO05D007438 1.5e-144 516.9 424 61.6
Manes.01G082200 Manihot esculenta HOM05D005983 ORTHO05D007438 1.9e-144 516.5 375 67.5
Nitab4.5_0000618g0100 Nicotiana tabacum HOM05D005983 ORTHO05D007438 1.9e-144 516.5 450 59.8
Aqoxy5G03845 Aquilegia oxysepala HOM05D005983 ORTHO05D007438 2.5e-144 516.2 449 58.6
Sp7g15340 Schrenkiella parvula HOM05D005983 ORTHO05D007438 4.3e-144 515.4 425 60.9
CARHR223230 Cardamine hirsuta HOM05D005983 ORTHO05D007438 7.3e-144 514.6 423 61.9
TPR.G18111 Trifolium pratense HOM05D005983 ORTHO05D007438 1.6e-143 513.5 450 58.2
BcaNung00159 Brassica carinata HOM05D005983 ORTHO05D007438 4.7e-143 511.9 417 61.6
Carub.0007s2469 Capsella rubella HOM05D005983 ORTHO05D007438 6.2e-143 511.5 420 61.4
Sc01g0008340 Simmondsia chinensis HOM05D005983 ORTHO05D007438 6.2e-143 511.5 399 66.2
CsaV3_5G004310 Cucumis sativus L. HOM05D005983 ORTHO05D007438 1.4e-142 510.4 373 67.0
Rhsim01G0100800 Rhododendron simsii HOM05D005983 ORTHO05D007438 5.2e-142 508.4 552 51.1
Lsat_1_v5_gn_6_18021 Lactuca sativa HOM05D005983 ORTHO05D007438 7.6e-141 504.6 417 61.9
ATR0317G025 Amborella trichopoda HOM05D005983 ORTHO05D007438 8.7e-137 491.1 475 54.9
PSO357G0330 Papaver somniferum HOM05D005983 ORTHO05D007438 3.1e-134 482.6 455 55.4
PSO170G1657 Papaver somniferum HOM05D005983 ORTHO05D007438 6.9e-134 481.5 404 59.4
Atru.chr9.1290 Acer truncatum HOM05D005983 ORTHO05D007438 6.4e-132 474.9 390 62.6
Os03g0101900 Oryza sativa ssp. japonica HOM05D005983 ORTHO05D007438 1.4e-131 473.8 407 58.2
unitig_744.g24471 Utricularia gibba HOM05D005983 ORTHO05D007438 4.2e-131 472.2 397 56.2
Duzib205G1394 Durio zibethinus HOM05D005983 ORTHO05D007438 2.1e-130 469.9 452 56.4
SGA_v2.0_scaffold104G30169 Striga asiatica HOM05D005983 ORTHO05D007438 2.7e-130 469.5 519 49.9
ClCG01G004150 Citrullus lanatus HOM05D005983 ORTHO05D007438 1.3e-129 467.2 448 54.7
arahy.Tifrunner.gnm1.ann1.0NSC2B Arachis hypogaea HOM05D005983 ORTHO05D007438 3.1e-126 456.1 407 58.2
Cpa.g.sc29.178 Carica papaya HOM05D005983 ORTHO05D007438 3.7e-119 432.6 360 60.3
HPP92_015120 Vanilla planifolia HOM05D005983 ORTHO05D007438 1.8e-118 430.3 359 58.2
TAR713G0001 Trochodendron aralioides HOM05D005983 ORTHO05D007438 4.0e-118 429.1 357 61.6
THA.LOC104815498 Tarenaya hassleriana HOM05D005983 ORTHO05D007438 5.8e-117 425.2 318 64.8
Mapoly0144s0014 Marchantia polymorpha HOM05D005983 ORTHO05D007438 3.9e-105 386.0 430 49.5
Pp3c10_660 Physcomitrium patens HOM05D005983 ORTHO05D007438 2.7e-98 363.2 394 50.3
Thhalv10025592m.g Eutrema salsugineum HOM05D005983 ORTHO05D007438 2.2e-95 353.6 302 62.3
SMO351G0559 Selaginella moellendorffii HOM05D005983 ORTHO05D007438 1.1e-91 341.3 388 46.9
Actinidia14415 Actinidia chinensis HOM05D005983 ORTHO05D007438 8.8e-89 331.6 215 70.7
vmacro00190 Vaccinium macrocarpon HOM05D005983 ORTHO05D007438 4.1e-86 322.8 386 49.2
CBR_g40206 Chara braunii HOM05D005983 ORTHO05D007438 2.0e-85 320.5 454 41.6
Nitab4.5_0001076g0010 Nicotiana tabacum HOM05D005983 ORTHO05D007438 5.0e-84 315.8 251 62.2
CDE04G1583 Ceratophyllum demersum HOM05D005983 ORTHO05D007438 3.6e-82 309.7 234 62.4
Actinidia02144 Actinidia chinensis HOM05D005983 ORTHO05D007438 4.1e-78 296.2 178 76.4
Haze_01067 Corylus avellana HOM05D005983 ORTHO05D007438 4.7e-74 282.7 282 54.6
Lj2A220G37 Lonicera japonica HOM05D005983 ORTHO05D007438 1.4e-65 254.6 214 59.3
Lj2A220G36 Lonicera japonica HOM05D005983 ORTHO05D007438 9.5e-59 231.9 145 75.2
Actinidia02145 Actinidia chinensis HOM05D005983 ORTHO05D007438 2.2e-55 220.7 230 54.3
Haze_01069 Corylus avellana HOM05D005983 ORTHO05D007438 4.6e-53 213.0 141 75.2
Glyma.11G034500 Glycine max HOM05D005983 ORTHO05D007438 3.9e-52 209.9 143 71.3
BcaC02g09019 Brassica carinata HOM05D005983 ORTHO05D007438 2.5e-51 207.2 227 51.1
C04p39670 Brassica napus HOM05D005983 ORTHO05D007438 2.5e-51 207.2 227 51.1
BolC4t25537H Brassica oleracea HOM05D005983 ORTHO05D007438 2.5e-51 207.2 227 51.1
C09p44540 Brassica napus HOM05D005983 ORTHO05D007438 7.3e-51 205.7 250 47.2
Cfa023268 Carpinus fangiana HOM05D005983 ORTHO05D007438 1.9e-43 181.0 406 32.8
vmacro00191 Vaccinium macrocarpon HOM05D005983 ORTHO05D007438 6.2e-42 176.0 129 64.3
PRCOL_00002495 Prasinoderma coloniale HOM05D000251 ORTHO05D007438 2.3e-36 157.5 325 33.5
Actinidia14414 Actinidia chinensis HOM05D005983 ORTHO05D007438 5.6e-35 152.9 175 50.9
SEGI_17682 Sequoiadendron giganteum HOM05D005983 ORTHO05D007438 1.3e-31 141.7 119 54.6
C02p21550 Brassica napus HOM05D005983 ORTHO05D007438 6.0e-29 132.9 201 38.3
BcaC03g14715 Brassica carinata HOM05D005983 ORTHO05D007438 7.8e-29 132.5 178 42.1
BolC2t08295H Brassica oleracea HOM05D005983 ORTHO05D007438 7.8e-29 132.5 178 42.1
CDE04G0678 Ceratophyllum demersum HOM05D005983 ORTHO05D007438 4.3e-27 126.7 135 54.8
FAN13G0557 Fragaria x ananassa HOM05D005983 ORTHO05D007438 1.6e-26 124.8 95 63.2
BcaC07g42540 Brassica carinata HOM05D005983 ORTHO05D007438 6.8e-25 119.4 114 52.6
BraA08t34844Z Brassica rapa HOM05D005983 ORTHO05D007438 3.4e-24 117.1 193 37.8
Pp3s32_287 Physcomitrium patens HOM05D003620 ORTHO05D007438 1.0e-20 105.5 271 28.8
Ca_29382_v3 Cicer arietinum L. HOM05D003620 ORTHO05D007438 6.9e-17 92.8 259 28.2
SEGI_40136 Sequoiadendron giganteum HOM05D005983 ORTHO05D007438 1.5e-16 91.7 99 46.5
RcHm_v2.0_Chr7g0203671 Rosa chinensis HOM05D005983 ORTHO05D007438 3.8e-15 87.0 88 52.3
PRCOL_00006167 Prasinoderma coloniale HOM05D003620 ORTHO05D004261 1.6e-13 81.6 274 27.0
Carub.0007s1498 Capsella rubella HOM05D003620 ORTHO05D004261 2.3e-12 77.8 276 27.5
AT4G25970 Arabidopsis thaliana HOM05D003620 ORTHO05D004261 1.1e-11 75.5 276 26.1
Thhalv10024661m.g Eutrema salsugineum HOM05D003620 ORTHO05D004261 1.1e-11 75.5 277 27.8
Os01g0959800 Oryza sativa ssp. japonica HOM05D003620 ORTHO05D004261 1.1e-11 75.5 267 28.5
AL7G27030 Arabidopsis lyrata HOM05D003620 ORTHO05D004261 1.5e-11 75.1 276 26.4
RcHm_v2.0_Chr7g0225351 Rosa chinensis HOM05D003620 ORTHO05D004261 1.9e-11 74.7 276 27.2
SEGI_40726 Sequoiadendron giganteum HOM05D005983 ORTHO05D007438 1.9e-11 74.7 72 51.4
Aa31LG3G330 Aethionema arabicum HOM05D003620 ORTHO05D004261 2.5e-11 74.3 276 26.8
Mapoly0064s0044 Marchantia polymorpha HOM05D003620 ORTHO05D004261 2.5e-11 74.3 210 29.5
Sabra03G0035800 Salix brachista HOM05D003620 ORTHO05D004261 5.6e-11 73.2 278 25.9
BcaC09g50725 Brassica carinata HOM05D003620 ORTHO05D004261 9.6e-11 72.4 277 27.8
C01p21590 Brassica napus HOM05D003620 ORTHO05D004261 9.6e-11 72.4 277 27.8
BolC1t02078H Brassica oleracea HOM05D003620 ORTHO05D004261 9.6e-11 72.4 277 27.8
CARHR233480 Cardamine hirsuta HOM05D003620 ORTHO05D004261 9.6e-11 72.4 276 27.5
A01p17230 Brassica napus HOM05D003620 ORTHO05D004261 1.3e-10 72.0 277 27.8
BraA01t01679Z Brassica rapa HOM05D003620 ORTHO05D004261 1.3e-10 72.0 277 27.8
FvH4_5g30530 Fragaria vesca HOM05D003620 ORTHO05D004261 1.3e-10 72.0 276 27.5
FAN08G3618 Fragaria x ananassa HOM05D003620 ORTHO05D004261 1.3e-10 72.0 276 27.9
FAN18G1779 Fragaria x ananassa HOM05D003620 ORTHO05D004261 1.3e-10 72.0 276 27.5
FAN04G1518 Fragaria x ananassa HOM05D003620 ORTHO05D004261 1.6e-10 71.6 276 27.5
Potri.003G061700 Populus trichocarpa HOM05D003620 ORTHO05D004261 1.6e-10 71.6 278 25.2
Pp3c15_7420 Physcomitrium patens HOM05D003620 ORTHO05D004261 2.8e-10 70.9 266 27.1
Aqoxy6G00354 Aquilegia oxysepala HOM05D003620 ORTHO05D004261 3.6e-10 70.5 267 25.5
BcaNung03773 Brassica carinata HOM05D003620 ORTHO05D004261 3.6e-10 70.5 277 27.1
Potri.001G172400 Populus trichocarpa HOM05D003620 ORTHO05D004261 8.1e-10 69.3 278 25.5
MSTRG.16561 Avicennia marina HOM05D003620 ORTHO05D004261 1.4e-09 68.6 276 26.8
CANSAT11G0919 Cannabis sativa HOM05D003620 ORTHO05D004261 1.4e-09 68.6 267 26.2
Manes.10G117200 Manihot esculenta HOM05D003620 ORTHO05D004261 1.4e-09 68.6 209 26.3
Sabra01G0139300 Salix brachista HOM05D003620 ORTHO05D004261 1.4e-09 68.6 281 26.0
Cc02_g21940 Coffea canephora HOM05D003620 ORTHO05D004261 2.4e-09 67.8 274 26.3
Cfa005564 Carpinus fangiana HOM05D003620 ORTHO05D004261 3.1e-09 67.4 276 27.5
ATR1136G049 Amborella trichopoda HOM05D003620 ORTHO05D004261 5.3e-09 66.6 209 25.8
Psat1g218440 Pisum sativum HOM05D003620 ORTHO05D004261 5.3e-09 66.6 270 28.1
Nn1g06259 Nelumbo nucifera HOM05D003620 ORTHO05D004261 1.5e-08 65.1 208 26.9
CAN.G523.97 Capsicum annuum HOM05D003620 ORTHO05D004261 2.0e-08 64.7 209 27.3
Solyc01g104880.3 Solanum lycopersicum HOM05D003620 ORTHO05D004261 2.6e-08 64.3 209 26.3
Sopen01g047400 Solanum pennellii HOM05D003620 ORTHO05D004261 2.6e-08 64.3 209 26.3
GSVIVG01029732001 Vitis vinifera HOM05D003620 ORTHO05D004261 3.4e-08 63.9 208 26.9
Nitab4.5_0007987g0020 Nicotiana tabacum HOM05D003620 ORTHO05D004261 4.5e-08 63.5 209 26.3
Sed0005951 Sechium edule HOM05D003620 ORTHO05D004261 4.5e-08 63.5 210 27.1
MELO3C018674.2 Cucumis melo HOM05D003620 ORTHO05D004261 1.3e-07 62.0 209 26.3
CsaV3_7G006180 Cucumis sativus L. HOM05D003620 ORTHO05D004261 1.3e-07 62.0 209 26.3
Peaxi162Scf00001g00523 Petunia axillaris HOM05D003620 ORTHO05D004261 2.2e-07 61.2 209 25.4
SMO244G0007 Selaginella moellendorffii HOM05D003620 ORTHO05D004261 2.2e-07 61.2 213 26.3
CBR_g4358 Chara braunii HOM05D003620 ORTHO05D004261 4.9e-07 60.1 185 25.4
Aa31LG3G13090 Aethionema arabicum HOM05D003620 ORTHO05D004261 5.5e-06 56.6 135 34.1
Cre02.g119600 Chlamydomonas reinhardtii HOM05D003620 ORTHO05D004261 7.1e-06 56.2 202 27.2


User provided reference genes

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