Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 1.4e-246 855.9 447 100.0
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 1.4e-246 855.9 447 100.0
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 5.8e-237 823.9 448 96.2
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 1.3e-196 689.9 464 81.5
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 4.5e-173 611.7 459 72.3
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 5.5e-171 604.7 456 71.7
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 7.2e-171 604.4 458 72.5
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 1.6e-170 603.2 455 71.9
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 2.1e-170 602.8 452 72.3
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 2.1e-170 602.8 450 71.3
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 2.8e-170 602.4 456 71.9
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 6.1e-170 601.3 463 71.3
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 1.0e-169 600.5 453 72.4
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 1.0e-169 600.5 464 70.7
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 1.4e-169 600.1 461 70.9
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 6.8e-169 597.8 455 71.6
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 1.5e-168 596.7 452 71.0
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 1.5e-168 596.7 451 71.4
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 2.0e-168 596.3 466 70.0
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 2.6e-168 595.9 459 70.8
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 2.6e-168 595.9 461 71.6
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 2.2e-167 592.8 460 70.0
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 2.2e-167 592.8 454 70.5
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 6.3e-167 591.3 399 76.2
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 8.3e-167 590.9 453 71.3
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 8.3e-167 590.9 462 69.5
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 1.1e-166 590.5 458 69.0
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 2.4e-166 589.3 379 79.7
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 4.1e-166 588.6 454 70.0
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 4.1e-166 588.6 454 70.0
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 9.2e-166 587.4 394 76.6
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 1.2e-165 587.0 457 71.8
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 1.6e-165 586.6 455 69.2
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 2.3e-164 582.8 399 75.9
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 2.3e-164 582.8 461 67.7
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 2.9e-164 582.4 454 69.4
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 2.9e-164 582.4 452 70.4
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 8.6e-164 580.9 457 70.7
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 1.5e-163 580.1 457 70.2
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 1.9e-163 579.7 464 68.5
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 3.3e-163 578.9 395 76.2
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 5.6e-163 578.2 453 68.9
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 1.6e-162 576.6 464 69.4
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 1.6e-162 576.6 445 70.3
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 3.6e-162 575.5 459 68.6
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 6.1e-162 574.7 431 71.9
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 6.1e-162 574.7 462 70.1
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 1.0e-161 573.9 366 80.1
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 1.8e-161 573.2 450 69.6
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 3.1e-161 572.4 379 77.8
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 3.1e-161 572.4 454 69.6
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 3.1e-161 572.4 463 69.3
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 2.0e-160 569.7 381 77.7
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 2.0e-160 569.7 448 68.5
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 2.0e-160 569.7 457 66.7
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 5.8e-160 568.2 378 76.5
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 5.8e-160 568.2 433 72.1
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 1.7e-159 566.6 459 68.2
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 3.7e-159 565.5 379 76.8
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 6.4e-159 564.7 389 74.0
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 1.9e-158 563.1 456 68.2
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 2.4e-158 562.8 466 66.1
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 3.2e-158 562.4 453 68.0
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 4.1e-158 562.0 463 66.7
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 1.6e-157 560.1 378 75.4
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 2.0e-157 559.7 454 67.8
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 2.7e-157 559.3 455 67.9
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 4.6e-157 558.5 447 67.6
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 7.8e-157 557.8 457 66.7
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 1.3e-156 557.0 453 68.0
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 1.3e-156 557.0 448 68.3
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 2.3e-156 556.2 379 76.5
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 3.9e-156 555.4 379 76.0
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 6.6e-156 554.7 461 67.5
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 9.5e-155 550.8 461 68.1
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 1.6e-154 550.1 454 67.4
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 1.6e-154 550.1 456 66.0
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 2.1e-154 549.7 379 74.4
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 2.8e-154 549.3 454 65.6
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 3.6e-154 548.9 451 66.7
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 3.6e-154 548.9 455 65.7
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 1.8e-153 546.6 378 76.2
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 2.3e-153 546.2 379 75.2
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 2.3e-153 546.2 379 75.2
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 2.3e-153 546.2 379 75.2
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 8.9e-153 544.3 451 65.0
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 8.9e-153 544.3 446 68.2
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 1.2e-152 543.9 446 68.2
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 1.7e-151 540.0 345 78.6
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 2.2e-151 539.7 366 76.2
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 1.1e-150 537.3 447 65.1
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 1.4e-150 537.0 458 65.1
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 7.0e-150 534.6 447 64.9
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 7.0e-150 534.6 457 66.1
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 3.0e-148 529.3 465 63.4
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 3.0e-148 529.3 465 63.4
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 1.2e-146 523.9 368 72.0
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 6.4e-143 511.5 460 62.4
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 7.8e-141 504.6 404 67.6
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.2e-135 486.5 452 61.7
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 3.2e-134 482.6 456 61.2
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 2.1e-133 479.9 312 77.6
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 7.6e-128 461.5 315 74.0
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 1.7e-124 450.3 311 76.2
Dinv05423 Davidia involucrata HOM05D005300 ORTHO05D006622 9.6e-123 444.5 294 77.6
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 1.4e-121 440.7 452 56.4
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 2.9e-119 433.0 373 61.7
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 3.8e-119 432.6 373 61.4
Nitab4.5_0002137g0020 Nicotiana tabacum HOM05D005300 ORTHO05D006622 7.9e-117 424.9 286 76.2
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 2.3e-116 423.3 371 60.6
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 1.5e-115 420.6 369 60.2
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 2.4e-113 413.3 371 59.0
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 2.0e-112 410.2 420 53.8
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 1.3e-111 407.5 284 72.2
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 1.4e-110 404.1 303 68.6
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 6.2e-106 388.7 372 57.8
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 7.1e-102 375.2 371 56.3
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 5.1e-100 369.0 285 69.1
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 1.0e-95 354.8 372 55.4
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 2.2e-95 353.6 323 59.1
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 8.5e-95 351.7 342 56.7
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 5.5e-94 349.0 366 51.4
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 9.4e-94 348.2 374 52.4
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 1.1e-89 334.7 372 52.7
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 7.4e-83 312.0 380 47.9
BcaB06g28596 Brassica carinata HOM05D005300 ORTHO05D006622 2.0e-80 303.9 247 66.8
BcaC02g07921 Brassica carinata HOM05D005300 ORTHO05D006622 2.2e-66 257.3 336 48.5
HPP92_012410 Vanilla planifolia HOM05D005300 ORTHO05D006622 2.3e-52 210.7 150 71.3
C04p61940 Brassica napus HOM05D005300 ORTHO05D006622 2.6e-51 207.2 349 41.0
A04p24950 Brassica napus HOM05D005300 ORTHO05D006622 7.5e-43 179.1 226 50.0
ATR0681G167 Amborella trichopoda HOM05D005300 ORTHO05D006622 3.0e-39 167.2 108 74.1
ATR0069G018 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.1e-37 161.0 168 52.4
ATR0069G030 Amborella trichopoda HOM05D005300 ORTHO05D006622 8.3e-34 149.1 90 78.9
ATR0753G011 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.4e-33 147.5 107 68.2
Zm00001eb417680 Zea mays HOM05D005300 ORTHO05D006622 4.1e-33 146.7 120 61.7
ATR0820G169 Amborella trichopoda HOM05D005300 ORTHO05D006622 4.3e-30 136.7 170 48.8
unitig_749.g13943 Utricularia gibba HOM05D005300 ORTHO05D006622 1.2e-24 118.6 73 83.6
ATR0775G001 Amborella trichopoda HOM05D005300 ORTHO05D006622 8.1e-21 105.9 87 70.1
SMO163G0076 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 1.0e-15 89.0 149 40.3
Os05g0388025 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D299932 1.9e-14 84.7 75 56.0
ATR0681G370 Amborella trichopoda HOM05D005300 ORTHO05D006622 3.8e-10 70.5 45 77.8
Cre17.g730100 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D146069 9.3e-09 65.9 170 34.7


User provided reference genes

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