Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62019079 Chenopodium quinoa HOM05D005358 ORTHO05D006384 2.1e-106 389.0 199 100.0
COL.COLO4_08077 Corchorus olitorius HOM05D005358 ORTHO05D006384 5.4e-102 374.4 199 93.0
CSS0029272 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 1.1e-99 366.7 198 91.9
CSS0039743 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 1.1e-99 366.7 198 91.9
CiPaw.06G031000 Carya illinoinensis HOM05D005358 ORTHO05D006384 1.1e-99 366.7 199 91.0
DCAR_003551 Daucus carota HOM05D005358 ORTHO05D006384 1.9e-99 365.9 198 92.9
Prupe.1G497100 Prunus persica HOM05D005358 ORTHO05D006384 2.5e-99 365.5 197 91.9
Sabra02G0065500 Salix brachista HOM05D005358 ORTHO05D006384 3.3e-99 365.2 198 91.4
Sed0008649 Sechium edule HOM05D005358 ORTHO05D006384 3.3e-99 365.2 200 91.0
MELO3C010608.2 Cucumis melo HOM05D005358 ORTHO05D006384 4.3e-99 364.8 200 91.5
ClCG08G005640 Citrullus lanatus HOM05D005358 ORTHO05D006384 7.3e-99 364.0 200 91.0
CsaV3_6G034480 Cucumis sativus L. HOM05D005358 ORTHO05D006384 7.3e-99 364.0 200 91.0
RcHm_v2.0_Chr6g0295831 Rosa chinensis HOM05D005358 ORTHO05D006384 9.6e-99 363.6 197 91.4
MD08G1162600 Malus domestica HOM05D005358 ORTHO05D006384 1.6e-98 362.8 197 91.4
CiPaw.05G221300 Carya illinoinensis HOM05D005358 ORTHO05D006384 2.1e-98 362.5 199 90.5
FAN15G1035 Fragaria x ananassa HOM05D005358 ORTHO05D006384 2.1e-98 362.5 198 91.4
FAN20G2528 Fragaria x ananassa HOM05D005358 ORTHO05D006384 2.1e-98 362.5 198 91.4
MBI16_g07664_MAGBIO Magnolia biondii HOM05D005358 ORTHO05D006384 2.1e-98 362.5 195 92.3
MD15G1348200 Malus domestica HOM05D005358 ORTHO05D006384 2.1e-98 362.5 197 90.9
TWI34G1827 Tripterygium wilfordii HOM05D005358 ORTHO05D006384 2.1e-98 362.5 198 90.4
FAN27G1910 Fragaria x ananassa HOM05D005358 ORTHO05D006384 2.8e-98 362.1 198 90.9
Actinidia03469 Actinidia chinensis HOM05D005358 ORTHO05D006384 4.8e-98 361.3 193 92.7
CANSAT25G3496 Cannabis sativa HOM05D005358 ORTHO05D006384 4.8e-98 361.3 198 89.4
Duzib093G1131 Durio zibethinus HOM05D005358 ORTHO05D006384 4.8e-98 361.3 199 89.4
Gohir.D05G237400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 4.8e-98 361.3 199 89.4
Gorai.009G245800 Gossypium raimondii HOM05D005358 ORTHO05D006384 4.8e-98 361.3 199 89.4
Nn5g28290 Nelumbo nucifera HOM05D005358 ORTHO05D006384 6.2e-98 360.9 198 89.9
QL09p034583 Quercus lobata HOM05D005358 ORTHO05D006384 6.2e-98 360.9 198 89.9
Aa31LG6G9330 Aethionema arabicum HOM05D005358 ORTHO05D006384 1.4e-97 359.8 198 91.4
Cfa016019 Carpinus fangiana HOM05D005358 ORTHO05D006384 1.4e-97 359.8 199 88.9
Gohir.A05G235100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 1.4e-97 359.8 199 89.4
TAR628G0971 Trochodendron aralioides HOM05D005358 ORTHO05D006384 1.8e-97 359.4 198 89.9
vmacro12532 Vaccinium macrocarpon HOM05D005358 ORTHO05D006384 1.8e-97 359.4 196 91.8
Aqoxy6G00218 Aquilegia oxysepala HOM05D005358 ORTHO05D006384 2.4e-97 359.0 195 89.2
Lalb_Chr11g0065911 Lupinus albus HOM05D005358 ORTHO05D006384 2.4e-97 359.0 200 89.0
CSS0043679 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 3.1e-97 358.6 197 90.4
Gohir.A01G189100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 3.1e-97 358.6 198 88.9
Gohir.D01G180400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 3.1e-97 358.6 198 88.9
Gorai.002G222200 Gossypium raimondii HOM05D005358 ORTHO05D006384 3.1e-97 358.6 198 88.9
Duzib116G0356 Durio zibethinus HOM05D005358 ORTHO05D006384 4.0e-97 358.2 197 89.8
Nitab4.5_0004044g0020 Nicotiana tabacum HOM05D005358 ORTHO05D006384 9.0e-97 357.1 201 88.1
AT1G44575 Arabidopsis thaliana HOM05D005358 ORTHO05D006384 1.2e-96 356.7 198 90.4
Cpa.g.sc64.88 Carica papaya HOM05D005358 ORTHO05D006384 1.2e-96 356.7 199 88.4
PGR042G4000 Punica granatum HOM05D005358 ORTHO05D006384 1.2e-96 356.7 197 88.8
Thecc.08G125500 Theobroma cacao HOM05D005358 ORTHO05D006384 1.2e-96 356.7 196 88.8
HPP92_025043 Vanilla planifolia HOM05D005358 ORTHO05D006384 1.2e-96 356.7 197 88.8
AL1G52370 Arabidopsis lyrata HOM05D005358 ORTHO05D006384 1.5e-96 356.3 198 90.4
BcaB04g17587 Brassica carinata HOM05D005358 ORTHO05D006384 1.5e-96 356.3 198 90.4
BcaB07g33947 Brassica carinata HOM05D005358 ORTHO05D006384 1.5e-96 356.3 198 90.4
BcaC08g42851 Brassica carinata HOM05D005358 ORTHO05D006384 1.5e-96 356.3 198 90.4
A10p07510 Brassica napus HOM05D005358 ORTHO05D006384 1.5e-96 356.3 198 90.4
C06p00660 Brassica napus HOM05D005358 ORTHO05D006384 1.5e-96 356.3 198 90.4
BolC6t35202H Brassica oleracea HOM05D005358 ORTHO05D006384 1.5e-96 356.3 198 90.4
BraSC36t46054Z Brassica rapa HOM05D005358 ORTHO05D006384 1.5e-96 356.3 198 90.4
Sabra05G0134400 Salix brachista HOM05D005358 ORTHO05D006384 1.5e-96 356.3 197 89.3
BcaC07g37296 Brassica carinata HOM05D005358 ORTHO05D006384 2.0e-96 355.9 198 90.4
A08p06370 Brassica napus HOM05D005358 ORTHO05D006384 2.0e-96 355.9 198 90.4
C08p07310 Brassica napus HOM05D005358 ORTHO05D006384 2.0e-96 355.9 198 90.4
BolC8t47572H Brassica oleracea HOM05D005358 ORTHO05D006384 2.0e-96 355.9 198 90.4
BraA08t32644Z Brassica rapa HOM05D005358 ORTHO05D006384 2.0e-96 355.9 198 90.4
FAN24G1660 Fragaria x ananassa HOM05D005358 ORTHO05D006384 2.0e-96 355.9 198 91.4
Lsat_1_v5_gn_6_35480 Lactuca sativa HOM05D005358 ORTHO05D006384 2.0e-96 355.9 197 89.8
FvH4_2g26970 Fragaria vesca HOM05D005358 ORTHO05D006384 2.6e-96 355.5 198 90.9
Lj7A340T34 Lonicera japonica HOM05D005358 ORTHO05D006384 2.6e-96 355.5 197 88.8
Lju12250A0T27 Lonicera japonica HOM05D005358 ORTHO05D006384 2.6e-96 355.5 197 88.8
TAR376G0195 Trochodendron aralioides HOM05D005358 ORTHO05D006384 2.6e-96 355.5 196 89.3
CARHR035950 Cardamine hirsuta HOM05D005358 ORTHO05D006384 4.5e-96 354.8 198 89.9
HanXRQChr02g0053151 Helianthus annuus HOM05D005358 ORTHO05D006384 4.5e-96 354.8 198 89.9
HanXRQChr02g0053161 Helianthus annuus HOM05D005358 ORTHO05D006384 4.5e-96 354.8 198 88.9
Sp1g33560 Schrenkiella parvula HOM05D005358 ORTHO05D006384 4.5e-96 354.8 198 89.9
Carub.0001s3521 Capsella rubella HOM05D005358 ORTHO05D006384 5.8e-96 354.4 198 89.9
Nitab4.5_0000322g0160 Nicotiana tabacum HOM05D005358 ORTHO05D006384 5.8e-96 354.4 201 88.1
Lj1g0002097 Lotus japonicus HOM05D005358 ORTHO05D006384 7.6e-96 354.0 200 89.5
THA.LOC104817350 Tarenaya hassleriana HOM05D005358 ORTHO05D006384 7.6e-96 354.0 198 89.4
Potri.002G083500 Populus trichocarpa HOM05D005358 ORTHO05D006384 9.9e-96 353.6 199 88.9
ATR0584G037 Amborella trichopoda HOM05D005358 ORTHO05D006384 1.3e-95 353.2 197 87.3
GSVIVG01008866001 Vitis vinifera HOM05D005358 ORTHO05D006384 1.3e-95 353.2 200 87.5
CDE02G0325 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 1.7e-95 352.8 198 86.9
Solyc06g060340.3 Solanum lycopersicum HOM05D005358 ORTHO05D006384 1.7e-95 352.8 201 88.6
Sopen06g020470 Solanum pennellii HOM05D005358 ORTHO05D006384 1.7e-95 352.8 201 88.6
Os01g0869800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 2.2e-95 352.4 200 88.5
Rhsim06G0103300 Rhododendron simsii HOM05D005358 ORTHO05D006384 2.2e-95 352.4 194 90.7
CAN.G1040.10 Capsicum annuum HOM05D005358 ORTHO05D006384 3.8e-95 351.7 200 88.5
arahy.Tifrunner.gnm1.ann1.L9FPHH Arachis hypogaea HOM05D005358 ORTHO05D006384 4.9e-95 351.3 201 89.6
Cc10_g11890 Coffea canephora HOM05D005358 ORTHO05D006384 2.4e-94 349.0 197 87.3
SEGI_26351 Sequoiadendron giganteum HOM05D005358 ORTHO05D006384 2.4e-94 349.0 198 89.4
Sc01g0006700 Simmondsia chinensis HOM05D005358 ORTHO05D006384 2.4e-94 349.0 199 84.9
PGSC0003DMG400017556 Solanum tuberosum HOM05D005358 ORTHO05D006384 2.4e-94 349.0 201 87.6
Oeu028563.1 Olea europaea HOM05D005358 ORTHO05D006384 4.2e-94 348.2 197 88.3
ECA233G3168 Erigeron canadensis HOM05D005358 ORTHO05D006384 5.4e-94 347.8 197 88.3
Thhalv10011718m.g Eutrema salsugineum HOM05D005358 ORTHO05D006384 7.1e-94 347.4 200 89.5
PSO170G3857 Papaver somniferum HOM05D005358 ORTHO05D006384 9.3e-94 347.1 198 86.9
PSO528G0145 Papaver somniferum HOM05D005358 ORTHO05D006384 9.3e-94 347.1 198 86.9
Peaxi162Scf00051g00910 Petunia axillaris HOM05D005358 ORTHO05D006384 9.3e-94 347.1 195 88.7
Os04g0690800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 1.2e-93 346.7 198 88.4
SGA_v2.0_scaffold25G11130 Striga asiatica HOM05D005358 ORTHO05D006384 1.2e-93 346.7 199 88.4
Dinv07219 Davidia involucrata HOM05D005358 ORTHO05D006384 1.6e-93 346.3 197 86.8
Eucgr.F03789 Eucalyptus grandis HOM05D005358 ORTHO05D006384 1.6e-93 346.3 196 89.8
Atru.chr13.1462 Acer truncatum HOM05D005358 ORTHO05D006384 3.5e-93 345.1 199 85.9
Atru.chr13.1484 Acer truncatum HOM05D005358 ORTHO05D006384 3.5e-93 345.1 199 85.9
Psat5g087360 Pisum sativum HOM05D005358 ORTHO05D006384 6.0e-93 344.4 199 87.4
Migut.C01123 Erythranthe guttata HOM05D005358 ORTHO05D006384 7.9e-93 344.0 199 85.9
MSTRG.22407 Avicennia marina HOM05D005358 ORTHO05D006384 1.0e-92 343.6 198 87.9
Medtr3g088040 Medicago truncatula HOM05D005358 ORTHO05D006384 1.3e-92 343.2 200 87.5
Oeu059439.1 Olea europaea HOM05D005358 ORTHO05D006384 2.3e-92 342.4 197 87.3
SalBow6G1113 Salvia bowleyana HOM05D005358 ORTHO05D006384 3.0e-92 342.0 200 87.0
TPR.G21057 Trifolium pratense HOM05D005358 ORTHO05D006384 3.0e-92 342.0 199 85.9
unitig_46.g18102 Utricularia gibba HOM05D005358 ORTHO05D006384 5.1e-92 341.3 197 87.3
Migut.N03279 Erythranthe guttata HOM05D005358 ORTHO05D006384 6.6e-92 340.9 197 86.3
Zm00001eb146510 Zea mays HOM05D005358 ORTHO05D006384 8.7e-92 340.5 194 88.1
Ciclev10002099m.g Citrus clementina HOM05D005358 ORTHO05D006384 7.4e-91 337.4 199 84.9
Glyma.04G249700 Glycine max HOM05D005358 ORTHO05D006384 1.8e-89 332.8 198 85.4
arahy.Tifrunner.gnm1.ann1.QP7RRL Arachis hypogaea HOM05D005358 ORTHO05D006384 5.3e-89 331.3 201 85.6
VMungo1309G1077 Vigna mungo HOM05D005358 ORTHO05D006384 6.9e-89 330.9 200 85.5
Hund26809 Selenicereus undatus HOM05D005358 ORTHO05D006384 1.5e-88 329.7 198 84.8
Glyma.06G113200 Glycine max HOM05D005358 ORTHO05D006384 2.0e-88 329.3 198 84.8
Phvul.009G125100 Phaseolus vulgaris HOM05D005358 ORTHO05D006384 1.2e-85 320.1 198 82.8
SMO146G0179 Selaginella moellendorffii HOM05D005358 ORTHO05D006384 5.1e-84 314.7 197 79.7
Pp3c20_23430 Physcomitrium patens HOM05D005358 ORTHO05D006384 1.1e-83 313.5 197 77.7
AUR62014337 Chenopodium quinoa HOM05D005358 ORTHO05D006384 1.9e-83 312.8 170 93.5
AagrBONN_evm.TU.Sc2ySwM_368.1869 Anthoceros agrestis HOM05D005358 ORTHO05D006384 3.4e-80 302.0 192 77.1
Mapoly0013s0199 Marchantia polymorpha HOM05D005358 ORTHO05D006384 4.9e-79 298.1 195 75.4
CDE08G0239 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 1.1e-73 280.4 164 85.4
Ah.05g171100 Amaranthus hybridus HOM05D005358 ORTHO05D006384 1.5e-67 260.0 134 97.8
Haze_00439 Corylus avellana HOM05D005358 ORTHO05D006384 1.9e-67 259.6 163 81.6
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 7.2e-62 241.1 161 72.7
CBR_g40031 Chara braunii HOM05D005358 ORTHO05D006384 1.7e-55 219.9 165 65.5
Manes.18G077312 Manihot esculenta HOM05D005358 ORTHO05D006384 1.1e-54 217.2 118 90.7
Dinv27311 Davidia involucrata HOM05D005358 ORTHO05D006384 1.8e-52 209.9 117 88.9
Ca_16558_v3 Cicer arietinum L. HOM05D005358 ORTHO05D006384 6.3e-50 201.4 124 83.9
EL10Ac1g01011 Beta vulgaris HOM05D005358 ORTHO05D006384 1.6e-48 196.8 161 68.9
CDE06G0290 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 1.2e-43 180.6 121 75.2
EL10Ac5g12375 Beta vulgaris HOM05D005358 ORTHO05D006384 7.5e-43 177.9 96 90.6
Cre01.g016600 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 1.0e-36 157.5 182 48.9
Cre01.g016750 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 1.0e-36 157.5 182 48.9
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 1.0e-36 157.5 148 60.1
Actinidia29466 Actinidia chinensis HOM05D005358 ORTHO05D006384 2.7e-32 142.9 78 92.3
FAN08G1189 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.5e-22 110.5 81 76.5
PRCOL_00001561 Prasinoderma coloniale HOM05D005358 ORTHO05D006384 5.2e-12 75.5 183 30.1
Cre03.g146147 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 8.9e-12 74.7 150 36.7
Ah.05g171090 Amaranthus hybridus HOM05D007226 ORTHO05D009160 2.6e-11 73.2 36 94.4
MCO14G314 Micromonas commoda HOM05D005358 ORTHO05D006384 3.2e-09 66.2 206 32.5
MELO3C030542.2 Cucumis melo HOM05D005358 ORTHO05D006384 1.2e-08 64.3 36 80.6
MELO3C031367.2 Cucumis melo HOM05D005358 ORTHO05D006384 3.5e-08 62.8 36 83.3


User provided reference genes

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