Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62018140 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1912.5 972 100.0
AUR62034478 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1763.0 951 94.4
EL10Ac2g03047 Beta vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1584.3 1149 73.9
Sc10g0003320 Simmondsia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1491.9 1052 73.7
Dinv11490 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1463.4 1051 72.6
CAN.G206.195 Capsicum annuum HOM05D004116 ORTHO05D004734 0.0e+00 1447.6 1042 72.6
Lj4C115G25 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1439.5 1039 71.9
Hma1.2p1_0037F.1_g023840 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 0.0e+00 1437.2 1050 72.1
Sopen02g033270 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1436.8 1042 71.8
Dinv33806 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1435.6 1046 71.2
Nitab4.5_0000565g0080 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1434.9 1076 70.5
Prupe.3G259400 Prunus persica HOM05D004116 ORTHO05D004734 0.0e+00 1433.3 1035 72.3
MD17G1056200 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1432.2 1039 72.5
DCAR_011063 Daucus carota HOM05D004116 ORTHO05D004734 0.0e+00 1430.6 1049 71.1
Haze_14475 Corylus avellana HOM05D004116 ORTHO05D004734 0.0e+00 1429.5 1051 71.3
PGSC0003DMG400001440 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1428.7 1051 71.3
Actinidia26244 Actinidia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1424.1 1016 72.6
Peaxi162Scf00166g00825 Petunia axillaris HOM05D004116 ORTHO05D004734 0.0e+00 1419.8 1043 71.3
vmacro18164 Vaccinium macrocarpon HOM05D004116 ORTHO05D004734 0.0e+00 1419.4 1025 71.7
Cc07_g03830 Coffea canephora HOM05D004116 ORTHO05D004734 0.0e+00 1416.0 1049 71.1
GSVIVG01011484001 Vitis vinifera HOM05D004116 ORTHO05D004734 0.0e+00 1411.7 1044 71.0
MELO3C009839.2 Cucumis melo HOM05D004116 ORTHO05D004734 0.0e+00 1411.4 1046 71.5
QL02p039609 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1411.0 1042 70.4
QL02p039361 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1410.2 1042 70.4
CsaV3_3G041070 Cucumis sativus L. HOM05D004116 ORTHO05D004734 0.0e+00 1409.8 1046 71.3
Atru.chr8.371 Acer truncatum HOM05D004116 ORTHO05D004734 0.0e+00 1407.1 1043 70.7
ClCG10G015430 Citrullus lanatus HOM05D004116 ORTHO05D004734 0.0e+00 1406.7 1045 71.2
TAR629G1084 Trochodendron aralioides HOM05D004116 ORTHO05D004734 0.0e+00 1404.8 1042 70.2
CSS0030715 Camellia sinensis var. sinensis HOM05D004116 ORTHO05D004734 0.0e+00 1404.4 1025 71.2
Gorai.006G012900 Gossypium raimondii HOM05D004116 ORTHO05D004734 0.0e+00 1403.3 1058 69.5
Oeu045355.1 Olea europaea HOM05D004116 ORTHO05D004734 0.0e+00 1402.9 1048 70.4
Duzib264G1228 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1402.5 1050 69.6
Gohir.D09G011100 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1400.2 1058 69.4
Ciclev10010958m.g Citrus clementina HOM05D004116 ORTHO05D004734 0.0e+00 1399.8 1049 70.3
arahy.Tifrunner.gnm1.ann1.M1DWNQ Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1397.9 1059 70.0
MD09G1060800 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1397.9 1058 70.5
TWI60G1537 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1396.3 1044 70.2
PGR004G0109 Punica granatum HOM05D004116 ORTHO05D004734 0.0e+00 1395.9 1046 69.6
Manes.01G099400 Manihot esculenta HOM05D004116 ORTHO05D004734 0.0e+00 1393.3 1037 70.1
THA.LOC104822346 Tarenaya hassleriana HOM05D004116 ORTHO05D004734 0.0e+00 1393.3 1024 71.3
Aa31LG11G14160 Aethionema arabicum HOM05D004116 ORTHO05D004734 0.0e+00 1392.5 1047 69.5
TWI34G1118 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1389.4 1044 69.9
Sed0005067 Sechium edule HOM05D004116 ORTHO05D004734 0.0e+00 1385.2 1051 69.8
Nitab4.5_0008573g0070 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1384.4 1080 68.6
CiPaw.03G091800 Carya illinoinensis HOM05D004116 ORTHO05D004734 0.0e+00 1384.0 1049 69.2
Rhsim08G0073200 Rhododendron simsii HOM05D004116 ORTHO05D004734 0.0e+00 1381.3 1070 68.0
Thecc.04G090300 Theobroma cacao HOM05D004116 ORTHO05D004734 0.0e+00 1380.5 1054 68.9
Duzib147G0424 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1379.4 1050 68.8
Lju41A7G39 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1379.4 1062 69.6
SGA_v2.0_scaffold4G02415 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1377.8 1043 69.3
SGA_v2.0_scaffold413G51160 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1377.1 1049 68.6
Carub.0006s1357 Capsella rubella HOM05D004116 ORTHO05D004734 0.0e+00 1375.5 1047 68.3
BraA02t05272Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1375.1 1048 68.3
Lalb_Chr21g0318471 Lupinus albus HOM05D004116 ORTHO05D004734 0.0e+00 1373.6 1046 69.2
MSTRG.23904 Avicennia marina HOM05D004116 ORTHO05D004734 0.0e+00 1373.2 1042 68.5
Eucgr.I01989 Eucalyptus grandis HOM05D004116 ORTHO05D004734 0.0e+00 1371.3 1040 69.1
A02p03010 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1369.0 1050 68.1
AT5G15400 Arabidopsis thaliana HOM05D004116 ORTHO05D004734 0.0e+00 1365.9 1047 68.3
Migut.H00657 Erythranthe guttata HOM05D004116 ORTHO05D004734 0.0e+00 1365.5 1042 68.5
Thhalv10012542m.g Eutrema salsugineum HOM05D004116 ORTHO05D004734 0.0e+00 1364.7 1049 68.4
CARHR197910 Cardamine hirsuta HOM05D004116 ORTHO05D004734 0.0e+00 1364.0 1047 68.2
AL6G26260 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 0.0e+00 1362.8 1047 68.1
VMungo0464G1725 Vigna mungo HOM05D004116 ORTHO05D004734 0.0e+00 1362.1 1054 67.8
COL.COLO4_07430 Corchorus olitorius HOM05D004116 ORTHO05D004734 0.0e+00 1361.7 1051 68.3
A10p23490 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1360.9 1054 67.5
BraA10t44416Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1360.9 1054 67.5
Sp6g28690 Schrenkiella parvula HOM05D004116 ORTHO05D004734 0.0e+00 1360.5 1049 67.9
Glyma.19G027200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1359.7 1052 68.5
Medtr6g013690 Medicago truncatula HOM05D004116 ORTHO05D004734 0.0e+00 1359.0 1053 67.1
Phvul.004G033100 Phaseolus vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1357.8 1046 68.4
Cfa007620 Carpinus fangiana HOM05D004116 ORTHO05D004734 0.0e+00 1357.4 1051 68.7
BolC9t59011H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1356.7 1051 67.6
TPR.G26216 Trifolium pratense HOM05D004116 ORTHO05D004734 0.0e+00 1356.3 1046 68.1
Glyma.13G059200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1352.8 1055 68.2
Potri.017G089600 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1351.3 1044 67.9
C02p07680 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1350.9 1052 67.3
Ca_04866_v3 Cicer arietinum L. HOM05D004116 ORTHO05D004734 0.0e+00 1350.9 1045 68.5
Lj2g0025037 Lotus japonicus HOM05D004116 ORTHO05D004734 0.0e+00 1349.3 1055 67.2
BolC2t06699H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1349.0 1052 67.2
C09p61720 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1348.6 1052 67.4
Potri.004G121200 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1346.6 1045 67.8
PGSC0003DMG400007132 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1346.3 1030 68.3
Lsat_1_v5_gn_4_170201 Lactuca sativa HOM05D004116 ORTHO05D004734 0.0e+00 1345.1 1050 68.0
CANSAT64G2358 Cannabis sativa HOM05D004116 ORTHO05D004734 0.0e+00 1338.6 1050 68.2
BcaC03g13414 Brassica carinata HOM05D004116 ORTHO05D004734 0.0e+00 1337.0 1051 66.9
RcHm_v2.0_Chr2g0166651 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1337.0 1045 68.1
FAN09G3106 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1335.1 1047 68.5
arahy.Tifrunner.gnm1.ann1.JWLU7F Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1334.7 1048 68.0
HanXRQChr09g0264141 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1334.7 1050 67.2
FvH4_6g47550 Fragaria vesca HOM05D004116 ORTHO05D004734 0.0e+00 1330.1 1046 68.4
HanXRQChr15g0488441 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1329.7 1050 66.6
FAN14G3940 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1328.9 1046 68.3
Nn4g23336 Nelumbo nucifera HOM05D004116 ORTHO05D004734 0.0e+00 1327.4 1034 67.4
Gohir.A09G012200 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1315.1 1052 66.5
Sabra17G0078900 Salix brachista HOM05D004116 ORTHO05D004734 0.0e+00 1312.7 1058 65.8
FAN02G1010 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1309.3 1089 65.7
FAN05G0837 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1309.3 1087 66.0
PSO063G3309 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1308.9 1047 65.6
PSO013G0369 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1300.8 1047 65.6
Aqoxy3G03559 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1295.8 1030 66.1
Sopen06g031210 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1282.3 1030 65.7
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 0.0e+00 1280.0 923 70.6
MBI19_g32361_MAGBIO Magnolia biondii HOM05D004116 ORTHO05D004734 0.0e+00 1260.4 1052 63.7
Aqoxy3G01362 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1234.6 1026 63.7
Ah.12g062550 Amaranthus hybridus HOM05D004116 ORTHO05D004734 0.0e+00 1214.1 760 82.9
unitig_744.g24002 Utricularia gibba HOM05D004116 ORTHO05D004734 0.0e+00 1201.8 983 65.3
ATR0111G012 Amborella trichopoda HOM05D004116 ORTHO05D004734 0.0e+00 1187.2 823 72.9
Cpa.g.sc14.139 Carica papaya HOM05D004116 ORTHO05D004734 0.0e+00 1179.9 1049 62.2
Solyc06g074770.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 0.0e+00 1168.7 966 64.4
HPP92_023626 Vanilla planifolia HOM05D004116 ORTHO05D004734 0.0e+00 1167.1 902 66.2
Os03g0427900 Oryza sativa ssp. japonica HOM05D004116 ORTHO05D004734 0.0e+00 1149.4 1014 60.2
SHI16441 Sapria himalayana HOM05D004116 ORTHO05D004734 0.0e+00 1111.7 1035 58.6
RcHm_v2.0_Chr5g0047221 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1104.0 1014 60.7
Mapoly0052s0078 Marchantia polymorpha HOM05D004116 ORTHO05D004734 9.2e-288 993.8 903 57.6
AagrBONN_evm.TU.Sc2ySwM_340.219 Anthoceros agrestis HOM05D004116 ORTHO05D004734 1.2e-287 993.4 1024 54.3
Hma1.2p1_0604F.1_g187770 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 4.0e-283 978.4 622 81.2
Zm00001eb393280 Zea mays HOM05D004116 ORTHO05D004734 1.2e-282 976.9 712 69.2
Zm00001eb020370 Zea mays HOM05D004116 ORTHO05D004734 2.0e-282 976.1 719 69.3
SMO356G0406 Selaginella moellendorffii HOM05D004116 ORTHO05D004734 3.9e-270 935.3 883 55.7
Pp3c15_20630 Physcomitrium patens HOM05D004116 ORTHO05D004734 3.3e-269 932.2 1029 51.0
CDE04G3780 Ceratophyllum demersum HOM05D004116 ORTHO05D004734 6.2e-260 901.4 620 72.7
FAN11G2920 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.5e-242 843.6 993 50.8
Aqoxy3G00661 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 1.0e-233 814.3 556 74.1
PSO144G0086 Papaver somniferum HOM05D004116 ORTHO05D004734 3.0e-230 802.7 1020 47.6
Psat1g069120 Pisum sativum HOM05D004116 ORTHO05D004734 1.7e-228 797.0 477 83.9
PSO170G0544 Papaver somniferum HOM05D004116 ORTHO05D004734 2.7e-223 779.6 1026 46.3
PSO325G0009 Papaver somniferum HOM05D004116 ORTHO05D004734 2.7e-223 779.6 1016 47.2
FAN25G2854 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.8e-217 759.2 964 48.8
Solyc02g088550.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 3.4e-213 746.1 436 87.4
FvH4_3g25920 Fragaria vesca HOM05D004116 ORTHO05D004734 3.3e-184 649.8 435 76.1
PSO017G4845 Papaver somniferum HOM05D004116 ORTHO05D004734 3.3e-184 649.8 879 44.0
CDE07G1255 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 2.2e-180 637.1 399 78.4
BcaC04g24243 Brassica carinata HOM05D004116 ORTHO05D004734 4.1e-171 606.3 381 80.3
FAN16G3124 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.3e-168 596.7 479 66.2
CBR_g12108 Chara braunii HOM05D004116 ORTHO05D004734 1.1e-166 591.7 513 58.9
PSO144G0082 Papaver somniferum HOM05D004116 ORTHO05D004734 1.8e-158 564.3 549 55.4
PRCOL_00002499 Prasinoderma coloniale HOM05D004116 ORTHO05D004734 2.1e-151 540.8 918 38.3
FAN17G0761 Fragaria x ananassa HOM05D004116 ORTHO05D004734 7.9e-138 495.7 373 69.2
FAN09G1300 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.5e-136 490.7 367 69.2
FAN09G4205 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.5e-136 490.7 367 69.2
SEGI_13711 Sequoiadendron giganteum HOM05D004116 ORTHO05D004734 4.5e-133 479.9 323 74.3
FAN21G0296 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.9e-131 474.6 370 68.9
Cre09.g398350 Chlamydomonas reinhardtii HOM05D004116 ORTHO05D004734 7.4e-120 436.0 924 33.9
PSO384G2573 Papaver somniferum HOM05D004116 ORTHO05D004734 1.3e-119 435.3 587 44.1
Psat1g069040 Pisum sativum HOM05D004116 ORTHO05D004734 4.7e-114 416.8 453 51.9
FvH4_3g25930 Fragaria vesca HOM05D004116 ORTHO05D004734 5.0e-108 396.7 533 46.9
Aqoxy3G00662 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 5.2e-105 386.7 415 51.8
BcaNung03312 Brassica carinata HOM05D004116 ORTHO05D004734 4.5e-93 347.1 540 43.5
Lsat_1_v5_gn_8_41201 Lactuca sativa HOM05D004116 ORTHO05D004734 5.2e-89 333.6 195 86.2
PSO761G0054 Papaver somniferum HOM05D004116 ORTHO05D004734 5.7e-88 330.1 517 39.7
FAN12G4053 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.3e-84 318.2 515 41.4
Ah.12g062560 Amaranthus hybridus HOM05D004116 ORTHO05D004734 1.8e-81 308.5 291 59.1
PSO478G4129 Papaver somniferum HOM05D004116 ORTHO05D004734 1.2e-66 259.2 419 41.1
Hma1.2p1_1813F.1_g303850 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 1.9e-62 245.4 183 68.9
Lsat_1_v5_gn_8_41221 Lactuca sativa HOM05D004116 ORTHO05D004734 1.9e-59 235.3 344 43.0
CBR_g12111 Chara braunii HOM05D004116 ORTHO05D004734 2.5e-59 235.0 353 39.7
Actinidia17575 Actinidia chinensis HOM05D004116 ORTHO05D004734 7.3e-59 233.4 135 83.7
QL02p039616 Quercus lobata HOM05D004116 ORTHO05D004734 5.2e-57 227.3 286 47.2
FAN21G1132 Fragaria x ananassa HOM05D004116 ORTHO05D004734 6.4e-55 220.3 306 43.5
Lsat_1_v5_gn_0_45261 Lactuca sativa HOM05D004116 ORTHO05D004734 2.8e-50 204.9 165 69.7
Actinidia17576 Actinidia chinensis HOM05D000100 ORTHO05D004702 1.3e-44 186.0 121 77.7
MCO05G368 Micromonas commoda HOM05D004116 ORTHO05D004734 3.0e-44 184.9 192 50.0
Psat1g069080 Pisum sativum HOM05D004116 ORTHO05D004734 5.3e-41 174.1 143 64.3
Actinidia17574 Actinidia chinensis HOM05D004116 ORTHO05D004734 2.1e-37 162.2 290 37.6
FAN16G0041 Fragaria x ananassa HOM05D004116 ORTHO05D004734 8.7e-36 156.8 123 64.2
PSO675G1667 Papaver somniferum HOM05D004116 ORTHO05D004734 5.6e-35 154.1 176 52.3
TAR622G0429 Trochodendron aralioides HOM05D004116 ORTHO05D004734 8.4e-31 140.2 253 38.3
AL1G40200 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 9.0e-25 120.2 85 64.7
FAN21G1378 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.5e-19 102.1 230 35.7
CAN.G111.24 Capsicum annuum HOM05D004116 ORTHO05D004734 7.4e-19 100.5 208 34.6
SalBow6G1256 Salvia bowleyana HOM05D003831 ORTHO05D004440 4.8e-18 97.8 179 36.3
Hund13173 Selenicereus undatus HOM05D000214 ORTHO05D000131 3.2e-14 85.1 55 80.0
Oeu034757.1 Olea europaea HOM05D004116 ORTHO05D004734 5.5e-14 84.3 50 84.0
FAN16G0481 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.6e-13 82.8 221 33.5
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 6.7e-12 77.4 71 52.1
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 7.4e-11 73.9 69 50.7
Lsat_1_v5_gn_8_37500 Lactuca sativa HOM05D003233 ORTHO05D003694 1.3e-10 73.2 49 71.4
CDE04G3166 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 4.8e-10 71.2 46 80.4
MBI19_g01203_MAGBIO Magnolia biondii HOM05D001745 ORTHO05D001772 3.2e-06 58.5 62 50.0
FvH4_2g18060 Fragaria vesca HOM05D004243 ORTHO05D005018 9.4e-06 57.0 130 27.7
FAN24G1844 Fragaria x ananassa HOM05D004243 ORTHO05D005018 9.4e-06 57.0 130 27.7
FAN27G1907 Fragaria x ananassa HOM05D004243 ORTHO05D005018 9.4e-06 57.0 130 27.7


User provided reference genes

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