Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62018045 Chenopodium quinoa HOM05D004869 ORTHO05D005893 0.0e+00 1616.7 787 100.0
AUR62015247 Chenopodium quinoa HOM05D004869 ORTHO05D005893 0.0e+00 1570.4 787 96.7
EL10Ac3g06663 Beta vulgaris HOM05D004869 ORTHO05D005893 0.0e+00 1385.2 835 81.3
Hund20507 Selenicereus undatus HOM05D004869 ORTHO05D005893 0.0e+00 1339.7 835 78.7
Ah.04g153720 Amaranthus hybridus HOM05D004869 ORTHO05D005893 0.0e+00 1302.7 815 78.4
Sc19g0005490 Simmondsia chinensis HOM05D004869 ORTHO05D005893 0.0e+00 1210.7 789 74.7
Dinv44350 Davidia involucrata HOM05D004869 ORTHO05D005893 0.0e+00 1194.5 819 71.7
QL06p010392 Quercus lobata HOM05D004869 ORTHO05D005893 0.0e+00 1194.5 835 70.7
CiPaw.01G145300 Carya illinoinensis HOM05D004869 ORTHO05D005893 0.0e+00 1193.3 834 70.6
Rhsim04G0226400 Rhododendron simsii HOM05D004869 ORTHO05D005893 0.0e+00 1192.2 835 69.9
Prupe.1G131800 Prunus persica HOM05D004869 ORTHO05D005893 0.0e+00 1188.3 817 71.4
vmacro08186 Vaccinium macrocarpon HOM05D004869 ORTHO05D005893 0.0e+00 1188.3 857 68.8
CANSAT78G0178 Cannabis sativa HOM05D004869 ORTHO05D005893 0.0e+00 1187.2 834 70.7
Cfa015427 Carpinus fangiana HOM05D004869 ORTHO05D005893 0.0e+00 1187.2 835 69.9
Oeu016255.1 Olea europaea HOM05D004869 ORTHO05D005893 0.0e+00 1186.8 838 69.6
RcHm_v2.0_Chr4g0423401 Rosa chinensis HOM05D004869 ORTHO05D005893 0.0e+00 1182.5 810 71.7
MD13G1164300 Malus domestica HOM05D004869 ORTHO05D005893 0.0e+00 1178.3 817 70.3
MD16G1164100 Malus domestica HOM05D004869 ORTHO05D005893 0.0e+00 1177.9 825 70.2
GSVIVG01035107001 Vitis vinifera HOM05D004869 ORTHO05D005893 0.0e+00 1176.8 831 70.6
Actinidia40299 Actinidia chinensis HOM05D004869 ORTHO05D005893 0.0e+00 1174.1 791 71.7
Thecc.04G289100 Theobroma cacao HOM05D004869 ORTHO05D005893 0.0e+00 1172.1 834 69.2
Nitab4.5_0008670g0020 Nicotiana tabacum HOM05D004869 ORTHO05D005893 0.0e+00 1171.8 819 70.5
Hma1.2p1_1352F.1_g277460 Hydrangea macrophylla HOM05D004869 ORTHO05D005893 0.0e+00 1169.8 835 69.9
FvH4_4g18700 Fragaria vesca HOM05D004869 ORTHO05D005893 0.0e+00 1169.1 810 71.1
Migut.N00074 Erythranthe guttata HOM05D004869 ORTHO05D005893 0.0e+00 1168.7 831 68.5
COL.COLO4_13820 Corchorus olitorius HOM05D004869 ORTHO05D005893 0.0e+00 1167.9 835 69.8
Solyc05g054370.2 Solanum lycopersicum HOM05D004869 ORTHO05D005893 0.0e+00 1166.0 834 68.9
TWI73G0801 Tripterygium wilfordii HOM05D004869 ORTHO05D005893 0.0e+00 1163.7 831 68.8
Atru.chr4.2905 Acer truncatum HOM05D004869 ORTHO05D005893 0.0e+00 1162.9 835 69.2
Nitab4.5_0000695g0140 Nicotiana tabacum HOM05D004869 ORTHO05D005893 0.0e+00 1162.5 819 69.6
Potri.008G219000 Populus trichocarpa HOM05D004869 ORTHO05D005893 0.0e+00 1161.4 817 69.6
Sopen05g032860 Solanum pennellii HOM05D004869 ORTHO05D005893 0.0e+00 1160.6 834 68.5
Glyma.09G042000 Glycine max HOM05D004869 ORTHO05D005893 0.0e+00 1159.1 835 68.0
Lj6g0019427 Lotus japonicus HOM05D004869 ORTHO05D005893 0.0e+00 1159.1 828 69.6
THA.LOC104802695 Tarenaya hassleriana HOM05D004869 ORTHO05D005893 0.0e+00 1157.5 831 67.6
FAN12G0537 Fragaria x ananassa HOM05D004869 ORTHO05D005893 0.0e+00 1157.1 819 70.0
PGSC0003DMG400023436 Solanum tuberosum HOM05D004869 ORTHO05D005893 0.0e+00 1156.7 834 68.5
Duzib212G0051 Durio zibethinus HOM05D004869 ORTHO05D005893 0.0e+00 1153.7 834 68.9
Cpa.g.sc50.161 Carica papaya HOM05D004869 ORTHO05D005893 0.0e+00 1151.0 834 68.1
Sabra10G0006600 Salix brachista HOM05D004869 ORTHO05D005893 0.0e+00 1149.4 841 68.6
Aqoxy5G00789 Aquilegia oxysepala HOM05D004869 ORTHO05D005893 0.0e+00 1148.3 838 68.5
FAN17G0377 Fragaria x ananassa HOM05D004869 ORTHO05D005893 0.0e+00 1147.1 827 68.9
Potri.010G010448 Populus trichocarpa HOM05D004869 ORTHO05D005893 0.0e+00 1146.7 835 68.9
TWI53G1493 Tripterygium wilfordii HOM05D004869 ORTHO05D005893 0.0e+00 1145.2 832 68.3
AT3G06810 Arabidopsis thaliana HOM05D004869 ORTHO05D005893 0.0e+00 1144.8 832 67.1
FAN12G1313 Fragaria x ananassa HOM05D004869 ORTHO05D005893 0.0e+00 1144.8 849 67.7
VMungo1309G2596 Vigna mungo HOM05D004869 ORTHO05D005893 0.0e+00 1144.0 835 67.2
Peaxi162Scf00065g01213 Petunia axillaris HOM05D004869 ORTHO05D005893 0.0e+00 1143.6 817 68.2
Phvul.009G250700 Phaseolus vulgaris HOM05D004869 ORTHO05D005893 0.0e+00 1143.6 835 67.9
Sopen01g027900 Solanum pennellii HOM05D004869 ORTHO05D005893 0.0e+00 1143.6 816 68.1
Glyma.15G150900 Glycine max HOM05D004869 ORTHO05D005893 0.0e+00 1142.5 835 67.5
PSO832G2232 Papaver somniferum HOM05D004869 ORTHO05D005893 0.0e+00 1140.9 839 67.6
Thhalv10020074m.g Eutrema salsugineum HOM05D004869 ORTHO05D005893 0.0e+00 1139.8 832 66.8
AL3G17930 Arabidopsis lyrata HOM05D004869 ORTHO05D005893 0.0e+00 1139.0 832 66.7
MELO3C006684.2 Cucumis melo HOM05D004869 ORTHO05D005893 0.0e+00 1139.0 834 68.8
Gorai.005G061800 Gossypium raimondii HOM05D004869 ORTHO05D005893 0.0e+00 1139.0 832 67.7
Carub.0003s0635 Capsella rubella HOM05D004869 ORTHO05D005893 0.0e+00 1138.6 832 66.7
Solyc01g066310.4 Solanum lycopersicum HOM05D004869 ORTHO05D005893 0.0e+00 1137.9 816 68.0
ECA246G3101 Erigeron canadensis HOM05D004869 ORTHO05D005893 0.0e+00 1137.5 834 67.1
Sed0001345 Sechium edule HOM05D004869 ORTHO05D005893 0.0e+00 1137.5 816 69.4
ClCG05G006260 Citrullus lanatus HOM05D004869 ORTHO05D005893 0.0e+00 1135.9 834 68.3
Manes.03G198800 Manihot esculenta HOM05D004869 ORTHO05D005893 0.0e+00 1134.8 790 71.1
HanXRQChr17g0535991 Helianthus annuus HOM05D004869 ORTHO05D005893 0.0e+00 1132.5 834 67.9
CsaV3_3G014880 Cucumis sativus L. HOM05D004869 ORTHO05D005893 0.0e+00 1131.7 834 68.5
Cc03_g01500 Coffea canephora HOM05D004869 ORTHO05D005893 0.0e+00 1131.3 835 67.9
Gohir.A02G051000 Gossypium hirsutum HOM05D004869 ORTHO05D005893 0.0e+00 1130.9 810 68.8
PSO210G1050 Papaver somniferum HOM05D004869 ORTHO05D005893 0.0e+00 1130.2 838 67.2
Sp3g05780 Schrenkiella parvula HOM05D004869 ORTHO05D005893 0.0e+00 1128.6 832 66.1
A05p41290 Brassica napus HOM05D004869 ORTHO05D005893 0.0e+00 1127.5 828 66.7
Aa31LG5G17400 Aethionema arabicum HOM05D004869 ORTHO05D005893 0.0e+00 1125.5 832 65.7
Lsat_1_v5_gn_3_21560 Lactuca sativa HOM05D004869 ORTHO05D005893 0.0e+00 1125.2 866 65.4
Lj6A681T39 Lonicera japonica HOM05D004869 ORTHO05D005893 0.0e+00 1125.2 831 68.0
C05p60510 Brassica napus HOM05D004869 ORTHO05D005893 0.0e+00 1124.8 828 66.7
BolC5t34705H Brassica oleracea HOM05D004869 ORTHO05D005893 0.0e+00 1124.8 828 66.7
DCAR_027053 Daucus carota HOM05D004869 ORTHO05D005893 0.0e+00 1124.8 811 67.9
Lalb_Chr20g0117401 Lupinus albus HOM05D004869 ORTHO05D005893 0.0e+00 1124.0 835 66.6
arahy.Tifrunner.gnm1.ann1.ZXWI6N Arachis hypogaea HOM05D004869 ORTHO05D005893 0.0e+00 1123.2 835 66.9
BraA05t22852Z Brassica rapa HOM05D004869 ORTHO05D005893 0.0e+00 1122.8 828 66.7
CARHR081430 Cardamine hirsuta HOM05D004869 ORTHO05D005893 0.0e+00 1121.7 832 66.0
CAN.G449.73 Capsicum annuum HOM05D004869 ORTHO05D005893 0.0e+00 1119.4 834 66.3
Lalb_Chr15g0086081 Lupinus albus HOM05D004869 ORTHO05D005893 0.0e+00 1118.2 834 66.7
Gohir.D02G055900 Gossypium hirsutum HOM05D004869 ORTHO05D005893 0.0e+00 1114.4 832 66.7
Ciclev10004291m.g Citrus clementina HOM05D004869 ORTHO05D005893 0.0e+00 1112.4 834 67.1
CDE11G0521 Ceratophyllum demersum HOM05D004869 ORTHO05D005893 0.0e+00 1109.0 836 66.0
Ca_01910_v3 Cicer arietinum L. HOM05D004869 ORTHO05D005893 0.0e+00 1106.3 816 66.8
Ciclev10004342m.g Citrus clementina HOM05D004869 ORTHO05D005893 0.0e+00 1105.9 834 66.7
SGA_v2.0_scaffold119G32706 Striga asiatica HOM05D004869 ORTHO05D005893 0.0e+00 1096.6 799 67.0
Nn3g21544 Nelumbo nucifera HOM05D004869 ORTHO05D005893 0.0e+00 1091.6 778 69.4
Os07g0675000 Oryza sativa ssp. japonica HOM05D004869 ORTHO05D005893 0.0e+00 1089.3 814 66.0
Zm00001eb111400 Zea mays HOM05D004869 ORTHO05D005893 0.0e+00 1082.0 838 64.8
ATR0693G241 Amborella trichopoda HOM05D004869 ORTHO05D005893 0.0e+00 1078.2 835 65.6
TAR365G0733 Trochodendron aralioides HOM05D004869 ORTHO05D005893 2.9e-300 1035.0 842 64.3
HPP92_003120 Vanilla planifolia HOM05D004869 ORTHO05D005893 7.0e-294 1013.8 838 62.5
MBI18_g44774_MAGBIO Magnolia biondii HOM05D004869 ORTHO05D005893 4.5e-293 1011.1 802 64.0
Eucgr.B01578 Eucalyptus grandis HOM05D004869 ORTHO05D005893 5.4e-286 987.6 725 68.1
Haze_01165 Corylus avellana HOM05D004869 ORTHO05D005893 2.3e-281 972.2 790 64.3
Pp3c18_21710 Physcomitrium patens HOM05D004869 ORTHO05D005893 1.0e-273 946.8 832 58.4
Pp3c22_4180 Physcomitrium patens HOM05D004869 ORTHO05D005893 5.7e-272 941.0 833 57.3
arahy.Tifrunner.gnm1.ann1.YH0B1H Arachis hypogaea HOM05D004869 ORTHO05D005893 1.2e-269 933.3 795 61.5
SMO202G0033 Selaginella moellendorffii HOM05D004869 ORTHO05D005893 3.9e-268 928.3 833 56.3
Mapoly0111s0015 Marchantia polymorpha HOM05D004869 ORTHO05D005893 6.8e-257 891.0 833 54.1
SMO169G0300 Selaginella moellendorffii HOM05D004869 ORTHO05D005893 1.5e-232 810.1 845 51.5
AagrBONN_evm.TU.Sc2ySwM_228.2629 Anthoceros agrestis HOM05D004869 ORTHO05D005893 4.6e-229 798.5 713 56.8
CBR_g54445 Chara braunii HOM05D004869 ORTHO05D005893 1.8e-228 796.6 925 48.9
TPR.G26039 Trifolium pratense HOM05D004869 ORTHO05D005893 1.3e-212 743.8 591 61.1
unitig_26.g10563 Utricularia gibba HOM05D004869 ORTHO05D005893 1.2e-208 730.7 490 72.7
DCAR_000477 Daucus carota HOM05D004869 ORTHO05D005893 2.0e-208 729.9 484 72.5
BcaNung06666 Brassica carinata HOM05D004869 ORTHO05D005893 4.2e-206 722.2 491 72.1
CSS0035117 Camellia sinensis var. sinensis HOM05D004869 ORTHO05D005893 1.6e-205 720.3 463 75.4
SHI00220 Sapria himalayana HOM05D004869 ORTHO05D005893 2.9e-199 699.5 620 57.3
Cre16.g675850 Chlamydomonas reinhardtii HOM05D004869 ORTHO05D005893 1.7e-194 683.7 957 41.9
Medtr2g435800 Medicago truncatula HOM05D004869 ORTHO05D005893 1.5e-192 677.2 569 58.9
Psat1g156400 Pisum sativum HOM05D004869 ORTHO05D005893 2.6e-192 676.4 577 57.5
PRCOL_00002960 Prasinoderma coloniale HOM05D004869 ORTHO05D005893 2.7e-160 570.1 804 41.9
BcaC05g30559 Brassica carinata HOM05D004869 ORTHO05D005893 7.5e-147 525.4 627 47.7
Oeu031983.1 Olea europaea HOM05D004869 ORTHO05D005893 1.1e-142 511.5 428 60.3
MCO01G041 Micromonas commoda HOM05D004869 ORTHO05D005893 2.3e-135 487.3 424 59.2
MBI18_g37159_MAGBIO Magnolia biondii HOM05D004869 ORTHO05D005893 3.5e-128 463.4 422 61.6
Hma1.2p1_0804F.1_g221110 Hydrangea macrophylla HOM05D004869 ORTHO05D005893 5.6e-126 456.1 385 60.0
Cfa024444 Carpinus fangiana HOM05D004869 ORTHO05D005893 2.5e-105 387.5 424 48.3
Medtr2g436030 Medicago truncatula HOM05D004869 ORTHO05D005893 1.8e-100 371.3 215 84.7
Cfa022681 Carpinus fangiana HOM05D004869 ORTHO05D005893 1.5e-99 368.2 425 45.6
QL06p007479 Quercus lobata HOM05D004869 ORTHO05D005893 3.8e-98 363.6 233 78.1
DCAR_023301 Daucus carota HOM05D004869 ORTHO05D005893 2.1e-96 357.8 300 57.0
Nn1g04010 Nelumbo nucifera HOM05D004869 ORTHO05D005893 2.7e-88 330.9 190 84.2
Rhsim04G0225600 Rhododendron simsii HOM05D004869 ORTHO05D005893 5.7e-78 296.6 318 52.2
TPR.G13211 Trifolium pratense HOM05D004869 ORTHO05D005893 3.5e-75 287.3 162 89.5
SEGI_30643 Sequoiadendron giganteum HOM05D004869 ORTHO05D005893 2.9e-66 257.7 191 64.9
QL93p0200_0027 Quercus lobata HOM05D004869 ORTHO05D005893 3.5e-59 234.2 157 77.1
Rhsim04G0225700 Rhododendron simsii HOM05D004869 ORTHO05D005893 1.7e-45 188.7 133 72.9
Lsat_1_v5_gn_3_21640 Lactuca sativa HOM05D004869 ORTHO05D005893 1.5e-41 175.6 138 68.8
Rhsim04G0226200 Rhododendron simsii HOM05D004869 ORTHO05D005893 1.8e-39 168.7 150 62.0
unitig_26.g10564 Utricularia gibba HOM05D004869 ORTHO05D005893 1.8e-39 168.7 212 43.9
RcHm_v2.0_Chr3g0480631 Rosa chinensis HOM05D004869 ORTHO05D005893 3.2e-36 157.9 118 64.4
MCO01G771 Micromonas commoda HOM05D004869 ORTHO05D005893 7.3e-33 146.7 326 32.2
SEGI_32872 Sequoiadendron giganteum HOM05D004869 ORTHO05D005893 2.1e-27 128.6 89 71.9
RcHm_v2.0_Chr6g0311831 Rosa chinensis HOM05D004869 ORTHO05D005893 2.7e-27 128.3 115 57.4
HanXRQChr01g0024801 Helianthus annuus HOM05D004869 ORTHO05D005893 6.6e-26 123.6 180 38.9
SEGI_25692 Sequoiadendron giganteum HOM05D004869 ORTHO05D005893 1.1e-25 122.9 101 57.4
SalBow5G3485 Salvia bowleyana HOM05D004869 ORTHO05D005893 5.6e-25 120.6 75 82.7
SMO367G1086 Selaginella moellendorffii HOM05D001528 ORTHO05D006464 2.0e-22 112.1 287 31.0
Lsat_1_v5_gn_5_23780 Lactuca sativa HOM05D004869 ORTHO05D005893 9.9e-22 109.8 117 49.6
AagrBONN_evm.TU.Sc2ySwM_117.3343 Anthoceros agrestis HOM05D001528 ORTHO05D006464 1.7e-21 109.0 269 32.0
Mapoly0154s0036 Marchantia polymorpha HOM05D001528 ORTHO05D006464 4.1e-20 104.4 282 30.9
BNapus_Darmor_BZH_scaffold_117p00100 Brassica napus HOM05D004869 ORTHO05D005893 7.1e-20 103.6 73 74.0
Haze_26447 Corylus avellana HOM05D001528 ORTHO05D006464 1.6e-19 102.4 342 28.7
Pp3c3_14940 Physcomitrium patens HOM05D001528 ORTHO05D006464 1.6e-19 102.4 279 29.7
MBI18_g46557_MAGBIO Magnolia biondii HOM05D004869 ORTHO05D005893 7.8e-19 100.1 91 61.5
PGSC0003DMG400027831 Solanum tuberosum HOM05D004869 ORTHO05D005893 7.8e-19 100.1 59 81.4
MBI18_g23297_MAGBIO Magnolia biondii HOM05D004869 ORTHO05D005893 1.0e-18 99.8 91 62.6
BolC1t05585H Brassica oleracea HOM05D004869 ORTHO05D005893 1.7e-18 99.0 65 80.0
TPR.G15436 Trifolium pratense HOM05D004869 ORTHO05D005893 1.7e-18 99.0 81 60.5
PRCOL_00001565 Prasinoderma coloniale HOM05D001528 ORTHO05D006464 8.6e-18 96.7 285 29.1
PRCOL_00006365 Prasinoderma coloniale HOM05D001528 ORTHO05D006464 1.6e-16 92.4 318 26.7
AUR62025007 Chenopodium quinoa HOM05D001528 ORTHO05D006464 3.6e-16 91.3 409 24.9
Cfa026122 Carpinus fangiana HOM05D001528 ORTHO05D006464 1.4e-15 89.4 287 26.5
BcaC09g47921 Brassica carinata HOM05D004869 ORTHO05D005893 8.9e-15 86.7 57 78.9
Medtr0837s0010 Medicago truncatula HOM05D001528 ORTHO05D006464 1.2e-14 86.3 284 27.1
TWI75G0049 Tripterygium wilfordii HOM05D001528 ORTHO05D006464 1.2e-14 86.3 282 28.4
PRCOL_00002017 Prasinoderma coloniale HOM05D001528 ORTHO05D006464 3.2e-12 78.2 285 26.3
Cfa025513 Carpinus fangiana HOM05D001528 ORTHO05D022264 7.8e-11 73.6 301 23.9
Cfa027299 Carpinus fangiana HOM05D001528 ORTHO05D006464 7.8e-11 73.6 304 23.4
PRCOL_00006254 Prasinoderma coloniale HOM05D001528 ORTHO05D006464 1.9e-09 68.9 299 24.1
Lsat_1_v5_gn_4_34540 Lactuca sativa HOM05D004869 ORTHO05D005893 2.5e-09 68.6 91 44.0
Hma1.2p1_1662F.1_g296280 Hydrangea macrophylla HOM05D004869 ORTHO05D005893 2.1e-08 65.5 53 54.7
AUR62006528 Chenopodium quinoa HOM05D001528 ORTHO05D006464 1.4e-07 62.8 319 23.5


User provided reference genes

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