Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62017134 Chenopodium quinoa HOM05D003885 ORTHO05D004623 3.8e-123 444.9 229 100.0
AUR62035674 Chenopodium quinoa HOM05D003885 ORTHO05D004623 4.8e-94 348.2 230 82.2
Ah.06g181560 Amaranthus hybridus HOM05D003885 ORTHO05D004623 9.0e-93 344.0 233 77.3
Ah.13g073470 Amaranthus hybridus HOM05D003885 ORTHO05D004623 7.7e-92 340.9 235 77.0
Haze_09860 Corylus avellana HOM05D003885 ORTHO05D004623 4.8e-86 321.6 233 74.7
CSS0008032 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 2.4e-85 319.3 233 73.0
CSS0014433 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 2.4e-85 319.3 233 73.0
EL10Ac4g07536 Beta vulgaris HOM05D003885 ORTHO05D004623 3.1e-85 318.9 244 73.0
Cfa016929 Carpinus fangiana HOM05D003885 ORTHO05D004623 1.2e-84 317.0 233 73.8
vmacro11612 Vaccinium macrocarpon HOM05D003885 ORTHO05D004623 1.2e-84 317.0 229 74.2
Sc03g0011570 Simmondsia chinensis HOM05D003885 ORTHO05D004623 2.6e-84 315.8 233 74.2
HPP92_015188 Vanilla planifolia HOM05D003885 ORTHO05D004623 4.5e-84 315.1 232 72.8
Actinidia30379 Actinidia chinensis HOM05D003885 ORTHO05D004623 6.5e-83 311.2 232 73.7
Hund01874 Selenicereus undatus HOM05D003885 ORTHO05D004623 6.5e-83 311.2 240 72.9
Hund01875 Selenicereus undatus HOM05D003885 ORTHO05D004623 8.5e-83 310.8 239 72.8
TPR.G2621 Trifolium pratense HOM05D003885 ORTHO05D004623 1.9e-82 309.7 230 72.6
Aa31LG8G410 Aethionema arabicum HOM05D003885 ORTHO05D004623 3.2e-82 308.9 233 71.2
Nitab4.5_0005478g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 3.2e-82 308.9 230 72.6
TAR629G2602 Trochodendron aralioides HOM05D003885 ORTHO05D004623 3.2e-82 308.9 230 74.8
Psat0s1834g0040 Pisum sativum HOM05D003885 ORTHO05D004623 4.2e-82 308.5 229 72.5
Rhsim06G0232400 Rhododendron simsii HOM05D003885 ORTHO05D004623 5.5e-82 308.1 248 69.0
Zm00001eb119790 Zea mays HOM05D003885 ORTHO05D004623 9.4e-82 307.4 231 72.7
PGSC0003DMG400008684 Solanum tuberosum HOM05D003885 ORTHO05D004623 1.2e-81 307.0 233 70.8
QL08p003216 Quercus lobata HOM05D003885 ORTHO05D004623 1.6e-81 306.6 232 71.6
TWI39G1241 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 2.1e-81 306.2 229 72.1
AL3G24950 Arabidopsis lyrata HOM05D003885 ORTHO05D004623 2.7e-81 305.8 233 70.8
Prupe.6G027200 Prunus persica HOM05D003885 ORTHO05D004623 2.7e-81 305.8 235 70.6
CANSAT56G2895 Cannabis sativa HOM05D003885 ORTHO05D004623 4.7e-81 305.1 238 71.8
CAN.G492.53 Capsicum annuum HOM05D003885 ORTHO05D004623 6.1e-81 304.7 231 72.7
Nn1g07757 Nelumbo nucifera HOM05D003885 ORTHO05D004623 6.1e-81 304.7 234 72.2
Solyc10g005800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 6.1e-81 304.7 234 70.5
Sopen10g001770 Solanum pennellii HOM05D003885 ORTHO05D004623 6.1e-81 304.7 234 70.5
Os06g0106100 Oryza sativa ssp. japonica HOM05D003885 ORTHO05D004623 1.0e-80 303.9 238 69.7
BcaB06g25479 Brassica carinata HOM05D003885 ORTHO05D004623 1.8e-80 303.1 233 69.1
Carub.0003s1256 Capsella rubella HOM05D003885 ORTHO05D004623 1.8e-80 303.1 233 69.5
Thhalv10021450m.g Eutrema salsugineum HOM05D003885 ORTHO05D004623 1.8e-80 303.1 233 69.5
Duzib213G0370 Durio zibethinus HOM05D003885 ORTHO05D004623 2.3e-80 302.8 239 69.9
Lj4g0022976 Lotus japonicus HOM05D003885 ORTHO05D004623 3.0e-80 302.4 238 69.7
TAR627G0008 Trochodendron aralioides HOM05D003885 ORTHO05D004623 3.0e-80 302.4 239 72.0
Ciclev10009386m.g Citrus clementina HOM05D003885 ORTHO05D004623 3.9e-80 302.0 240 70.0
CiPaw.12G140300 Carya illinoinensis HOM05D003885 ORTHO05D004623 5.1e-80 301.6 231 71.9
Gorai.013G150700 Gossypium raimondii HOM05D003885 ORTHO05D004623 6.7e-80 301.2 234 70.1
Atru.chr2.3832 Acer truncatum HOM05D003885 ORTHO05D004623 8.8e-80 300.8 240 70.4
A05p36370 Brassica napus HOM05D003885 ORTHO05D004623 8.8e-80 300.8 233 68.7
BraA05t22437Z Brassica rapa HOM05D003885 ORTHO05D004623 8.8e-80 300.8 233 68.7
COL.COLO4_07729 Corchorus olitorius HOM05D003885 ORTHO05D004623 8.8e-80 300.8 239 69.5
Gohir.A13G131100 Gossypium hirsutum HOM05D003885 ORTHO05D004623 8.8e-80 300.8 233 70.4
Gohir.D13G134400 Gossypium hirsutum HOM05D003885 ORTHO05D004623 1.5e-79 300.1 233 70.0
Zm00001eb338740 Zea mays HOM05D003885 ORTHO05D004623 2.0e-79 299.7 231 72.7
Sp3g11380 Schrenkiella parvula HOM05D003885 ORTHO05D004623 2.6e-79 299.3 233 68.7
TWI38G2335 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 2.6e-79 299.3 232 70.3
GSVIVG01014735001 Vitis vinifera HOM05D003885 ORTHO05D004623 5.7e-79 298.1 233 70.4
Lsat_1_v5_gn_5_188801 Lactuca sativa HOM05D003885 ORTHO05D004623 7.4e-79 297.7 232 69.8
AT3G13200 Arabidopsis thaliana HOM05D003885 ORTHO05D004623 9.7e-79 297.4 233 68.7
C05p54750 Brassica napus HOM05D003885 ORTHO05D004623 1.7e-78 296.6 239 67.4
BolC5t34149H Brassica oleracea HOM05D003885 ORTHO05D004623 1.7e-78 296.6 239 67.4
Medtr4g100970 Medicago truncatula HOM05D003885 ORTHO05D004623 1.7e-78 296.6 239 68.6
Dinv40883 Davidia involucrata HOM05D003885 ORTHO05D004623 2.2e-78 296.2 229 69.9
Lj1g0011673 Lotus japonicus HOM05D003885 ORTHO05D004623 2.2e-78 296.2 239 68.6
Lj1C893G21 Lonicera japonica HOM05D003885 ORTHO05D004623 2.8e-78 295.8 229 72.5
Phvul.003G220300 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 2.8e-78 295.8 231 71.0
Potri.001G370366 Populus trichocarpa HOM05D003885 ORTHO05D004623 2.8e-78 295.8 233 70.4
BolC1t05136H Brassica oleracea HOM05D003885 ORTHO05D004623 3.7e-78 295.4 233 67.4
Sed0017804 Sechium edule HOM05D003885 ORTHO05D004623 3.7e-78 295.4 230 70.9
arahy.Tifrunner.gnm1.ann1.JC0UDE Arachis hypogaea HOM05D003885 ORTHO05D004623 6.3e-78 294.7 238 66.4
CARHR087790 Cardamine hirsuta HOM05D003885 ORTHO05D004623 6.3e-78 294.7 233 67.8
ClCG10G004480 Citrullus lanatus HOM05D003885 ORTHO05D004623 8.2e-78 294.3 238 68.5
MD03G1032500 Malus domestica HOM05D003885 ORTHO05D004623 8.2e-78 294.3 233 67.8
MD11G1036400 Malus domestica HOM05D003885 ORTHO05D004623 8.2e-78 294.3 233 67.8
BcaB04g18746 Brassica carinata HOM05D003885 ORTHO05D004623 1.1e-77 293.9 231 67.5
Ca_21964_v3 Cicer arietinum L. HOM05D003885 ORTHO05D004623 1.8e-77 293.1 238 67.2
Aqoxy3G02916 Aquilegia oxysepala HOM05D003885 ORTHO05D004623 2.4e-77 292.7 241 68.5
Manes.03G143400 Manihot esculenta HOM05D003885 ORTHO05D004623 2.4e-77 292.7 238 66.8
CsaV3_3G004310 Cucumis sativus L. HOM05D003885 ORTHO05D004623 3.1e-77 292.4 233 69.5
MELO3C014122.2 Cucumis melo HOM05D003885 ORTHO05D004623 4.1e-77 292.0 233 69.5
Thecc.07G008300 Theobroma cacao HOM05D003885 ORTHO05D004623 4.1e-77 292.0 231 70.1
A03p38080 Brassica napus HOM05D003885 ORTHO05D004623 5.3e-77 291.6 233 67.0
BraA03t12961Z Brassica rapa HOM05D003885 ORTHO05D004623 5.3e-77 291.6 233 67.0
A01p40350 Brassica napus HOM05D003885 ORTHO05D004623 7.0e-77 291.2 233 67.0
BraA01t04070Z Brassica rapa HOM05D003885 ORTHO05D004623 7.0e-77 291.2 233 67.0
Glyma.17G141500 Glycine max HOM05D003885 ORTHO05D004623 9.1e-77 290.8 239 67.4
Lalb_Chr16g0386671 Lupinus albus HOM05D003885 ORTHO05D004623 9.1e-77 290.8 231 67.5
C01p51880 Brassica napus HOM05D003885 ORTHO05D004623 1.2e-76 290.4 238 65.1
BolC3t16892H Brassica oleracea HOM05D003885 ORTHO05D004623 1.2e-76 290.4 233 67.0
VMungo0251G1810 Vigna mungo HOM05D003885 ORTHO05D004623 1.5e-76 290.0 239 67.8
DCAR_019010 Daucus carota HOM05D003885 ORTHO05D004623 2.0e-76 289.7 238 70.2
Duzib170G0277 Durio zibethinus HOM05D003885 ORTHO05D004623 2.0e-76 289.7 229 69.4
Glyma.05G059200 Glycine max HOM05D003885 ORTHO05D004623 4.5e-76 288.5 239 67.4
THA.LOC104822723 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 5.9e-76 288.1 233 66.1
FAN14G2004 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.3e-75 287.0 233 67.4
PGR083G1050 Punica granatum HOM05D003885 ORTHO05D004623 1.3e-75 287.0 240 67.9
THA.LOC104810295 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 1.7e-75 286.6 238 65.1
DCAR_003369 Daucus carota HOM05D003885 ORTHO05D004623 2.2e-75 286.2 229 70.7
Cc05_g15250 Coffea canephora HOM05D003885 ORTHO05D004623 3.8e-75 285.4 239 67.4
ECA246G5298 Erigeron canadensis HOM05D003885 ORTHO05D004623 8.5e-75 284.3 238 68.5
Peaxi162Scf00139g01026 Petunia axillaris HOM05D003885 ORTHO05D004623 8.5e-75 284.3 229 67.7
Lalb_Chr05g0221281 Lupinus albus HOM05D003885 ORTHO05D004623 7.2e-74 281.2 231 65.4
RcHm_v2.0_Chr3g0480061 Rosa chinensis HOM05D003885 ORTHO05D004623 7.2e-74 281.2 241 66.4
Sed0004751 Sechium edule HOM05D003885 ORTHO05D004623 1.2e-73 280.4 229 69.0
BcaC05g29203 Brassica carinata HOM05D003885 ORTHO05D004623 1.6e-73 280.0 239 65.3
THA.LOC104815689 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 1.6e-73 280.0 242 64.0
MBI11_g04749_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 2.7e-73 279.3 248 65.7
Lsat_1_v5_gn_5_2000 Lactuca sativa HOM05D003885 ORTHO05D004623 4.7e-73 278.5 271 58.7
FvH4_6g22570 Fragaria vesca HOM05D003885 ORTHO05D004623 6.1e-73 278.1 233 66.5
FAN14G0574 Fragaria x ananassa HOM05D003885 ORTHO05D004623 6.1e-73 278.1 233 66.5
SalBow2G3065 Salvia bowleyana HOM05D003885 ORTHO05D004623 6.1e-73 278.1 229 65.9
Eucgr.F02030 Eucalyptus grandis HOM05D003885 ORTHO05D004623 5.2e-72 275.0 238 64.7
Hma1.2p1_0193F.1_g083890 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 6.7e-72 274.6 293 56.3
ATR1153G045 Amborella trichopoda HOM05D003885 ORTHO05D004623 8.8e-72 274.2 241 66.0
FAN05G2176 Fragaria x ananassa HOM05D003885 ORTHO05D004623 8.8e-72 274.2 234 66.2
FAN09G2902 Fragaria x ananassa HOM05D003885 ORTHO05D004623 3.3e-71 272.3 234 66.2
Phvul.008G217400 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 7.4e-71 271.2 229 65.5
Sopen07g033990 Solanum pennellii HOM05D003885 ORTHO05D004623 7.4e-71 271.2 239 64.4
Nitab4.5_0010643g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.7e-70 270.0 235 66.0
MSTRG.14500 Avicennia marina HOM05D003885 ORTHO05D004623 1.4e-69 266.9 243 62.1
Sabra16G0243800 Salix brachista HOM05D003885 ORTHO05D004623 1.4e-69 266.9 253 61.7
SalBow2G0786 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.4e-69 266.2 230 63.9
Migut.M01631 Erythranthe guttata HOM05D003885 ORTHO05D004623 9.1e-69 264.2 229 64.2
SalBow8G3434 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.2e-68 263.8 230 63.9
Oeu039420.1 Olea europaea HOM05D003885 ORTHO05D004623 1.6e-68 263.5 236 63.6
SalBow2G1425 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.6e-68 263.5 230 63.5
PGSC0003DMG400022160 Solanum tuberosum HOM05D003885 ORTHO05D004623 3.5e-68 262.3 246 62.6
MSTRG.13030 Avicennia marina HOM05D003885 ORTHO05D004623 7.7e-68 261.2 233 62.7
SalBow2G3218 Salvia bowleyana HOM05D003885 ORTHO05D004623 7.7e-68 261.2 230 63.0
PSO210G5551 Papaver somniferum HOM05D003885 ORTHO05D004623 3.8e-67 258.8 229 63.3
PSO210G1946 Papaver somniferum HOM05D003885 ORTHO05D004623 1.5e-66 256.9 230 63.5
Nitab4.5_0003328g0110 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.9e-66 256.5 233 63.9
HanXRQChr05g0160321 Helianthus annuus HOM05D003885 ORTHO05D004623 2.5e-66 256.1 231 63.6
HanXRQChr08g0233271 Helianthus annuus HOM05D003885 ORTHO05D004623 3.2e-66 255.8 231 63.2
Pp3c5_15120 Physcomitrium patens HOM05D003885 ORTHO05D004623 2.1e-65 253.1 237 63.3
Mapoly0072s0064 Marchantia polymorpha HOM05D003885 ORTHO05D004623 4.7e-65 251.9 232 62.9
C03p46210 Brassica napus HOM05D003885 ORTHO05D004623 1.0e-64 250.8 233 60.1
unitig_61.g26133 Utricularia gibba HOM05D003885 ORTHO05D004623 4.0e-64 248.8 234 60.7
unitig_0.g990 Utricularia gibba HOM05D003885 ORTHO05D004623 2.0e-63 246.5 234 62.0
AagrBONN_evm.TU.Sc2ySwM_228.690 Anthoceros agrestis HOM05D003885 ORTHO05D004623 5.9e-60 235.0 230 58.3
FAN02G3468 Fragaria x ananassa HOM05D003885 ORTHO05D004623 3.8e-59 232.3 215 63.3
CBR_g58788 Chara braunii HOM05D003885 ORTHO05D004623 8.5e-59 231.1 232 57.3
Nitab4.5_0000152g0340 Nicotiana tabacum HOM05D003885 ORTHO05D004623 7.0e-53 211.5 259 50.6
Actinidia10568 Actinidia chinensis HOM05D003885 ORTHO05D004623 2.9e-51 206.1 185 64.9
Hma1.2p1_0133F.1_g061250 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 1.9e-50 203.4 121 85.1
TPR.G37597 Trifolium pratense HOM05D003885 ORTHO05D004623 2.5e-50 203.0 124 82.3
Nn1g07559 Nelumbo nucifera HOM05D003885 ORTHO05D004623 3.6e-49 199.1 121 84.3
SHI27704 Sapria himalayana HOM05D003885 ORTHO05D004623 6.1e-49 198.4 188 59.0
CSS0021051 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 2.0e-47 193.4 140 72.1
CSS0032461 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 3.4e-47 192.6 189 60.8
SMO356G0623 Selaginella moellendorffii HOM05D003885 ORTHO05D004623 3.7e-46 189.1 237 50.2
SGA_v2.0_scaffold8G04417 Striga asiatica HOM05D003885 ORTHO05D004623 4.9e-46 188.7 120 80.0
CSS0035354 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 6.3e-46 188.3 229 52.0
SalBow2G0143 Salvia bowleyana HOM05D003885 ORTHO05D004623 5.0e-43 178.7 113 79.6
SalBow2G2880 Salvia bowleyana HOM05D003885 ORTHO05D004623 6.6e-43 178.3 113 79.6
SalBow2G2704 Salvia bowleyana HOM05D003885 ORTHO05D004623 9.5e-42 174.5 113 77.9
RcHm_v2.0_Chr1g0318721 Rosa chinensis HOM05D003885 ORTHO05D004623 1.8e-40 170.2 142 68.3
MCO14G028 Micromonas commoda HOM05D003885 ORTHO05D004623 8.9e-40 167.9 233 46.8
Cre24.g755447 Chlamydomonas reinhardtii HOM05D003885 ORTHO05D004623 9.8e-39 164.5 239 43.5
Solyc07g065800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 2.3e-32 143.3 164 53.0
TPR.G37600 Trifolium pratense HOM05D003885 ORTHO05D004623 6.4e-30 135.2 82 82.9
MBI19_g41323_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 3.2e-29 132.9 80 82.5
arahy.Tifrunner.gnm1.ann1.BGFV7A Arachis hypogaea HOM05D003885 ORTHO05D004623 1.0e-27 127.9 77 81.8
CAN.G1427.13 Capsicum annuum HOM05D000822 ORTHO05D004949 3.0e-27 126.3 173 49.7
Zm00001eb157240 Zea mays HOM05D003885 ORTHO05D004623 3.9e-27 125.9 83 75.9
BcaC01g04006 Brassica carinata HOM05D003885 ORTHO05D004623 1.1e-26 124.4 77 77.9
Hma1.2p1_0133F.1_g061260 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 1.1e-26 124.4 77 80.5
SalBow8G5188 Salvia bowleyana HOM05D003885 ORTHO05D004623 5.8e-23 112.1 184 43.5
C05p54720 Brassica napus HOM05D003885 ORTHO05D004623 6.4e-22 108.6 76 72.4
COL.COLO4_09698 Corchorus olitorius HOM05D003885 ORTHO05D004623 1.9e-21 107.1 76 65.8
ATR0733G199 Amborella trichopoda HOM05D003885 ORTHO05D004623 4.1e-21 105.9 75 78.7
MCO14G027 Micromonas commoda HOM05D003885 ORTHO05D004623 7.8e-20 101.7 178 40.4
BcaB04g21002 Brassica carinata HOM05D003885 ORTHO05D004623 1.5e-18 97.4 69 68.1
RcHm_v2.0_Chr3g0468911 Rosa chinensis HOM05D003885 ORTHO05D004623 1.5e-18 97.4 226 34.5
PRCOL_00003569 Prasinoderma coloniale HOM05D003885 ORTHO05D004623 7.3e-18 95.1 229 34.9
ATR0733G138 Amborella trichopoda HOM05D003885 ORTHO05D004623 7.6e-15 85.1 44 88.6
Lsat_1_v5_gn_8_106160 Lactuca sativa HOM05D003885 ORTHO05D004623 2.2e-14 83.6 56 73.2
CSS0001317 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 3.9e-11 72.8 96 50.0
CSS0038981 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 5.6e-10 68.9 115 46.1
Zm00001eb225910 Zea mays HOM05D003885 ORTHO05D444501 5.3e-08 62.4 79 51.9
PSO384G2596 Papaver somniferum HOM05D003885 ORTHO05D004623 2.2e-06 57.0 52 57.7


User provided reference genes

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