Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62016972 Chenopodium quinoa HOM05D003743 ORTHO05D004311 0.0e+00 1092.0 623 100.0
Ah.09g235750 Amaranthus hybridus HOM05D003743 ORTHO05D004311 4.9e-274 947.6 649 83.7
EL10Ac8g20336 Beta vulgaris HOM05D003743 ORTHO05D004311 8.6e-271 936.8 649 81.7
AUR62014784 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.2e-264 916.4 637 82.1
Sc05g0007850 Simmondsia chinensis HOM05D003743 ORTHO05D004311 7.4e-222 774.2 649 72.9
Dinv07531 Davidia involucrata HOM05D003743 ORTHO05D004311 4.8e-189 665.2 672 60.7
Eucgr.E03353 Eucalyptus grandis HOM05D003743 ORTHO05D004311 8.2e-189 664.5 669 61.1
Manes.16G024900 Manihot esculenta HOM05D003743 ORTHO05D004311 5.3e-188 661.8 671 61.3
CsaV3_4G005020 Cucumis sativus L. HOM05D003743 ORTHO05D004311 1.1e-185 654.1 671 60.7
Thecc.06G191600 Theobroma cacao HOM05D003743 ORTHO05D004311 4.7e-184 648.7 670 59.3
Glyma.07G194200 Glycine max HOM05D003743 ORTHO05D004311 1.4e-183 647.1 668 59.6
THA.LOC104819165 Tarenaya hassleriana HOM05D003743 ORTHO05D004311 6.7e-183 644.8 664 59.9
VMungo0251G3484 Vigna mungo HOM05D003743 ORTHO05D004311 6.7e-183 644.8 668 59.4
Phvul.002G226300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 8.8e-183 644.4 665 59.4
Duzib160G0164 Durio zibethinus HOM05D003743 ORTHO05D004311 2.0e-182 643.3 666 59.5
Psat7g112160 Pisum sativum HOM05D003743 ORTHO05D004311 3.3e-182 642.5 668 58.7
EL10Ac8g18529 Beta vulgaris HOM05D003743 ORTHO05D004311 1.3e-181 640.6 538 70.1
Gohir.D10G024500 Gossypium hirsutum HOM05D003743 ORTHO05D004311 2.2e-181 639.8 670 58.8
Duzib235G1026 Durio zibethinus HOM05D003743 ORTHO05D004311 4.8e-181 638.6 673 59.9
Potri.004G039500 Populus trichocarpa HOM05D003743 ORTHO05D004311 1.1e-180 637.5 671 58.7
Cpa.g.sc27.76 Carica papaya HOM05D003743 ORTHO05D004311 1.4e-180 637.1 673 60.5
Lalb_Chr05g0218341 Lupinus albus HOM05D003743 ORTHO05D004311 3.1e-180 636.0 665 59.4
Medtr4g089070 Medicago truncatula HOM05D003743 ORTHO05D004311 4.1e-180 635.6 668 58.7
Gohir.A10G023800 Gossypium hirsutum HOM05D003743 ORTHO05D004311 7.0e-180 634.8 670 58.4
Glyma.13G182500 Glycine max HOM05D003743 ORTHO05D004311 9.1e-180 634.4 668 58.5
Potri.011G047900 Populus trichocarpa HOM05D003743 ORTHO05D004311 1.6e-179 633.6 673 60.6
TAR627G0572 Trochodendron aralioides HOM05D003743 ORTHO05D004311 1.6e-179 633.6 679 57.7
Prupe.3G050300 Prunus persica HOM05D003743 ORTHO05D004311 2.0e-179 633.3 672 58.3
MELO3C017564.2 Cucumis melo HOM05D003743 ORTHO05D004311 2.2e-178 629.8 671 58.9
Gorai.011G025800 Gossypium raimondii HOM05D003743 ORTHO05D004311 2.2e-178 629.8 670 58.4
Hma1.2p1_0126F.1_g059170 Hydrangea macrophylla HOM05D003743 ORTHO05D004311 2.2e-178 629.8 671 58.0
Thhalv10023338m.g Eutrema salsugineum HOM05D003743 ORTHO05D004311 1.9e-177 626.7 663 59.9
MD10G1061800 Malus domestica HOM05D003743 ORTHO05D004311 7.2e-177 624.8 672 57.9
Sabra04G0024300 Salix brachista HOM05D003743 ORTHO05D004311 9.4e-177 624.4 673 59.6
Sed0012938 Sechium edule HOM05D003743 ORTHO05D004311 2.1e-176 623.2 660 58.9
PGR042G1300 Punica granatum HOM05D003743 ORTHO05D004311 2.7e-176 622.9 681 55.8
FAN14G3620 Fragaria x ananassa HOM05D003743 ORTHO05D004311 6.1e-176 621.7 672 58.3
FAN16G2290 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.4e-175 620.5 672 58.6
COL.COLO4_31510 Corchorus olitorius HOM05D003743 ORTHO05D004311 2.3e-175 619.8 665 57.7
Haze_06507 Corylus avellana HOM05D003743 ORTHO05D004311 5.2e-175 618.6 671 58.3
Lsat_1_v5_gn_2_40361 Lactuca sativa HOM05D003743 ORTHO05D004311 6.8e-175 618.2 656 60.7
TWI23G0181 Tripterygium wilfordii HOM05D003743 ORTHO05D004311 6.8e-175 618.2 667 56.4
RcHm_v2.0_Chr5g0007801 Rosa chinensis HOM05D003743 ORTHO05D004311 8.8e-175 617.8 676 57.4
FAN21G0113 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.5e-174 617.1 672 58.0
Sabra11G0033300 Salix brachista HOM05D003743 ORTHO05D004311 2.0e-174 616.7 671 57.4
Ca_25733_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 2.6e-174 616.3 675 57.5
CSS0028072 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 9.8e-174 614.4 647 57.0
Aa31LG2G9550 Aethionema arabicum HOM05D003743 ORTHO05D004311 1.3e-173 614.0 662 57.4
Ah.04g152550 Amaranthus hybridus HOM05D003743 ORTHO05D004311 2.2e-173 613.2 661 54.3
FvH4_3g04783 Fragaria vesca HOM05D003743 ORTHO05D004311 8.3e-173 611.3 676 57.2
arahy.Tifrunner.gnm1.ann1.I4CLDN Arachis hypogaea HOM05D003743 ORTHO05D004311 4.1e-172 609.0 666 56.0
Carub.0002s0416 Capsella rubella HOM05D003743 ORTHO05D004311 5.4e-172 608.6 664 59.6
TPR.G12063 Trifolium pratense HOM05D003743 ORTHO05D004311 2.7e-171 606.3 668 57.3
CiPaw.10G046600 Carya illinoinensis HOM05D003743 ORTHO05D004311 7.7e-171 604.7 670 57.5
CSS0027200 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 1.3e-170 604.0 659 57.7
RhsimUnG0044100 Rhododendron simsii HOM05D003743 ORTHO05D004311 2.9e-170 602.8 673 60.5
FAN03G0627 Fragaria x ananassa HOM05D003743 ORTHO05D004311 6.5e-170 601.7 672 58.0
AL2G15400 Arabidopsis lyrata HOM05D003743 ORTHO05D004311 8.5e-170 601.3 664 59.2
TAR629G2996 Trochodendron aralioides HOM05D003743 ORTHO05D004311 8.5e-170 601.3 674 57.4
AT1G61040 Arabidopsis thaliana HOM05D003743 ORTHO05D004311 1.1e-169 600.9 664 58.9
CARHR052180 Cardamine hirsuta HOM05D003743 ORTHO05D004311 1.1e-169 600.9 660 59.4
Ciclev10028000m.g Citrus clementina HOM05D003743 ORTHO05D004311 3.2e-169 599.4 673 57.4
PSO170G2796 Papaver somniferum HOM05D003743 ORTHO05D004311 9.4e-169 597.8 666 59.5
Sp2g03480 Schrenkiella parvula HOM05D003743 ORTHO05D004311 1.6e-168 597.0 665 57.1
PSO210G5871 Papaver somniferum HOM05D003743 ORTHO05D004311 8.0e-168 594.7 666 59.6
Rhsim07G0025200 Rhododendron simsii HOM05D003743 ORTHO05D004311 8.0e-168 594.7 674 59.9
Oeu050830.1 Olea europaea HOM05D003743 ORTHO05D004311 1.4e-167 594.0 649 57.9
QL03p016879 Quercus lobata HOM05D003743 ORTHO05D004311 3.0e-167 592.8 666 55.4
BcaC06g31829 Brassica carinata HOM05D003743 ORTHO05D004311 4.0e-167 592.4 666 53.8
Nitab4.5_0003668g0110 Nicotiana tabacum HOM05D003743 ORTHO05D004311 1.5e-166 590.5 670 54.8
Migut.M01180 Erythranthe guttata HOM05D003743 ORTHO05D004311 8.3e-165 584.7 657 57.7
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.1e-164 584.3 656 54.3
Lj4g0023106 Lotus japonicus HOM05D003743 ORTHO05D004311 4.1e-164 582.4 667 57.0
Sopen02g023440 Solanum pennellii HOM05D003743 ORTHO05D004311 4.1e-164 582.4 662 54.2
Solyc02g078580.1 Solanum lycopersicum HOM05D003743 ORTHO05D004311 5.4e-164 582.0 662 54.1
PGSC0003DMG400022434 Solanum tuberosum HOM05D003743 ORTHO05D004311 7.0e-164 581.6 669 53.5
Cc02_g12930 Coffea canephora HOM05D003743 ORTHO05D004311 1.6e-163 580.5 664 53.6
QL05p039342 Quercus lobata HOM05D003743 ORTHO05D004311 1.6e-163 580.5 671 57.8
QL10p057179 Quercus lobata HOM05D003743 ORTHO05D004311 1.6e-163 580.5 671 57.8
Nitab4.5_0003347g0010 Nicotiana tabacum HOM05D003743 ORTHO05D004311 3.5e-163 579.3 670 53.9
Prupe.6G309900 Prunus persica HOM05D003743 ORTHO05D004311 5.9e-163 578.6 665 54.6
Peaxi162Scf00379g00092 Petunia axillaris HOM05D003743 ORTHO05D004311 1.0e-162 577.8 667 54.1
Aqoxy1G03805 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 2.9e-162 576.2 660 56.4
CAN.G1627.16 Capsicum annuum HOM05D003743 ORTHO05D004311 1.5e-161 573.9 677 54.8
Atru.chr7.2377 Acer truncatum HOM05D003743 ORTHO05D004311 9.5e-161 571.2 678 55.2
Nn1g07800 Nelumbo nucifera HOM05D003743 ORTHO05D004311 1.6e-160 570.5 680 55.6
C01p37700 Brassica napus HOM05D003743 ORTHO05D004311 6.1e-160 568.5 662 53.8
HanXRQChr10g0285841 Helianthus annuus HOM05D003743 ORTHO05D004311 1.2e-158 564.3 604 58.4
BcaC09g49339 Brassica carinata HOM05D003743 ORTHO05D004311 3.4e-158 562.8 659 53.6
FvH4_6g07870 Fragaria vesca HOM05D003743 ORTHO05D004311 5.7e-158 562.0 675 51.1
MBI04_g36401_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 5.7e-158 562.0 661 55.1
BcaC02g10594 Brassica carinata HOM05D003743 ORTHO05D004311 7.5e-158 561.6 672 54.2
C04p25600 Brassica napus HOM05D003743 ORTHO05D004311 7.5e-158 561.6 672 54.2
ATR0763G146 Amborella trichopoda HOM05D003743 ORTHO05D004311 5.4e-156 555.4 659 53.1
FAN14G1138 Fragaria x ananassa HOM05D003743 ORTHO05D004311 7.0e-156 555.1 675 50.7
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 4.6e-155 552.4 659 51.6
FAN05G4405 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.7e-154 550.4 675 50.2
DCAR_008049 Daucus carota HOM05D003743 ORTHO05D004311 2.3e-154 550.1 674 53.7
RcHm_v2.0_Chr3g0457571 Rosa chinensis HOM05D003743 ORTHO05D004311 2.3e-154 550.1 675 50.5
FAN09G3903 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.1e-153 547.7 675 50.1
CANSAT35G0257 Cannabis sativa HOM05D003743 ORTHO05D004311 1.5e-153 547.4 681 54.2
MBI16_g34925_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.6e-152 543.9 664 53.2
A01p29850 Brassica napus HOM05D003743 ORTHO05D004311 1.0e-151 541.2 667 51.0
SGA_v2.0_scaffold100G29640 Striga asiatica HOM05D003743 ORTHO05D004311 4.0e-151 539.3 669 51.6
CDE02G2043 Ceratophyllum demersum HOM05D003743 ORTHO05D004311 5.2e-151 538.9 660 54.7
unitig_748.g8020 Utricularia gibba HOM05D003743 ORTHO05D004311 5.2e-151 538.9 656 52.7
BcaB04g20309 Brassica carinata HOM05D003743 ORTHO05D004311 6.8e-151 538.5 674 51.3
DCAR_004097 Daucus carota HOM05D003743 ORTHO05D004311 1.2e-150 537.7 675 51.4
Lj8P171T25 Lonicera japonica HOM05D003743 ORTHO05D004311 2.0e-150 537.0 549 60.5
Lalb_Chr16g0383591 Lupinus albus HOM05D003743 ORTHO05D004311 1.7e-149 533.9 660 54.2
SalBow8G3648 Salvia bowleyana HOM05D003743 ORTHO05D004311 1.1e-148 531.2 663 50.5
Glyma.03G168800 Glycine max HOM05D003743 ORTHO05D004311 7.0e-148 528.5 662 52.1
HPP92_024423 Vanilla planifolia HOM05D003743 ORTHO05D004311 1.6e-147 527.3 685 48.9
BraA01t03113Z Brassica rapa HOM05D003743 ORTHO05D004311 3.5e-147 526.2 666 50.0
Glyma.19G170200 Glycine max HOM05D003743 ORTHO05D004311 4.6e-147 525.8 665 51.6
Ca_08759_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.0e-146 524.6 548 59.7
Ca_30219_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.0e-146 524.6 548 59.7
ECA240G0220 Erigeron canadensis HOM05D003743 ORTHO05D004311 1.0e-146 524.6 676 54.7
Psat3g052160 Pisum sativum HOM05D003743 ORTHO05D004311 3.9e-146 522.7 664 52.9
SEGI_13209 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 2.1e-144 516.9 669 49.6
Lj1g0019037 Lotus japonicus HOM05D003743 ORTHO05D004311 3.6e-144 516.2 668 53.0
FAN02G2028 Fragaria x ananassa HOM05D003743 ORTHO05D004311 8.9e-143 511.5 675 48.0
Lalb_Chr04g0260391 Lupinus albus HOM05D003743 ORTHO05D004311 3.4e-142 509.6 676 48.5
CANSAT54G1490 Cannabis sativa HOM05D003743 ORTHO05D004311 4.4e-142 509.2 653 49.5
Phvul.001G224300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 4.4e-142 509.2 666 49.2
Sc06g0009130 Simmondsia chinensis HOM05D003743 ORTHO05D004311 9.8e-142 508.1 658 55.0
FAN25G1603 Fragaria x ananassa HOM05D003743 ORTHO05D004311 4.9e-141 505.8 626 54.2
VMungo1383G2741 Vigna mungo HOM05D003743 ORTHO05D004311 8.3e-141 505.0 666 49.2
Phvul.001G167200 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 4.1e-140 502.7 668 50.6
MD04G1191400 Malus domestica HOM05D003743 ORTHO05D004311 7.8e-139 498.4 675 49.8
DCAR_004099 Daucus carota HOM05D003743 ORTHO05D004311 1.7e-138 497.3 670 50.1
TPR.G30857 Trifolium pratense HOM05D003743 ORTHO05D004311 4.3e-137 492.7 658 51.5
Glyma.03G230500 Glycine max HOM05D003743 ORTHO05D004311 2.8e-136 490.0 673 48.7
Aqoxy3G03252 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 6.2e-136 488.8 668 48.2
SHI01836 Sapria himalayana HOM05D003743 ORTHO05D004311 6.2e-136 488.8 670 47.8
VMungo1383G3375 Vigna mungo HOM05D003743 ORTHO05D004311 2.3e-135 486.9 662 48.8
Ca_20186_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 5.8e-134 482.3 673 49.9
TPR.G34103 Trifolium pratense HOM05D003743 ORTHO05D004311 5.8e-134 482.3 670 47.5
Psat7g225840 Pisum sativum HOM05D003743 ORTHO05D004311 3.2e-132 476.5 667 47.8
Zm00001eb137720 Zea mays HOM05D003743 ORTHO05D004311 5.4e-132 475.7 670 50.1
Zm00001eb410600 Zea mays HOM05D003743 ORTHO05D004311 7.1e-132 475.3 663 50.8
Medtr7g099060 Medicago truncatula HOM05D003743 ORTHO05D004311 2.8e-128 463.4 558 54.1
Os12g0535900 Oryza sativa ssp. japonica HOM05D003743 ORTHO05D004311 1.7e-125 454.1 568 50.4
Lj1g0026238 Lotus japonicus HOM05D003743 ORTHO05D004311 3.8e-125 453.0 658 44.8
arahy.Tifrunner.gnm1.ann1.58ANB0 Arachis hypogaea HOM05D003743 ORTHO05D004311 4.9e-125 452.6 661 48.7
Medtr4g032885 Medicago truncatula HOM05D003743 ORTHO05D004311 3.5e-123 446.4 666 46.4
MBI16_g34928_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 5.8e-118 429.1 647 49.8
Pp3c12_17420 Physcomitrium patens HOM05D003743 ORTHO05D004311 1.0e-106 391.7 616 43.2
AagrBONN_evm.TU.Sc2ySwM_368.1522 Anthoceros agrestis HOM05D003743 ORTHO05D004311 7.6e-102 375.6 660 40.5
Actinidia05611 Actinidia chinensis HOM05D003743 ORTHO05D004311 9.3e-100 368.6 400 57.5
Glyma.13G060000 Glycine max HOM05D003743 ORTHO05D004311 1.1e-97 361.7 407 56.3
FvH4_6g03621 Fragaria vesca HOM05D003743 ORTHO05D004311 1.5e-97 361.3 409 57.2
Mapoly0001s0024 Marchantia polymorpha HOM05D003743 ORTHO05D004311 1.5e-94 351.3 673 40.3
BolC1t03734H Brassica oleracea HOM05D003743 ORTHO05D004311 6.3e-88 329.3 423 52.0
A03p68920 Brassica napus HOM05D003743 ORTHO05D004311 5.9e-86 322.8 638 40.4
SMO118G0429 Selaginella moellendorffii HOM05D003743 ORTHO05D004311 7.2e-76 289.3 548 40.3
Mapoly0009s0176 Marchantia polymorpha HOM05D003743 ORTHO05D004311 7.9e-75 285.8 678 37.5
BraSC39t46172Z Brassica rapa HOM05D003743 ORTHO05D004311 5.2e-66 256.5 515 39.2
Lj1P877T22 Lonicera japonica HOM05D003743 ORTHO05D004311 2.6e-65 254.2 277 55.2
GSVIVG01006453001 Vitis vinifera HOM05D003743 ORTHO05D004311 9.7e-65 252.3 221 64.3
CBR_g30024 Chara braunii HOM05D003743 ORTHO05D004311 8.6e-53 212.6 631 33.4
ECA248G2279 Erigeron canadensis HOM05D003743 ORTHO05D004311 1.5e-52 211.8 390 37.9
Oeu016117.1 Olea europaea HOM05D003743 ORTHO05D004311 2.7e-46 191.0 644 32.8
EL10Ac4g08952 Beta vulgaris HOM05D003743 ORTHO05D004311 2.5e-44 184.5 145 68.3
Zm00001eb087640 Zea mays HOM05D003743 ORTHO05D004311 5.2e-34 150.2 276 36.6
MBI04_g35990_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 2.0e-33 148.3 231 52.8
FvH4_6g03622 Fragaria vesca HOM05D003743 ORTHO05D004311 5.6e-28 130.2 78 80.8
Lalb_Chr20g0113451 Lupinus albus HOM05D003743 ORTHO05D004311 3.4e-25 120.9 102 57.8
ECA246G3327 Erigeron canadensis HOM05D001482 ORTHO05D001499 4.9e-24 117.1 79 73.4
Aqoxy3G03215 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.7e-21 108.6 110 50.0
SGA_v2.0_scaffold49G18283 Striga asiatica HOM05D003743 ORTHO05D004311 2.8e-19 101.3 354 25.4
MD05G1317500 Malus domestica HOM05D003743 ORTHO05D004311 3.4e-17 94.4 129 48.1
EL10Ac5g12107 Beta vulgaris HOM05D003743 ORTHO05D004311 7.1e-15 86.7 46 82.6
Rhsim02G0125200 Rhododendron simsii HOM05D003743 ORTHO05D004311 1.0e-13 82.8 57 66.7
Aqoxy3G03213 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.7e-13 82.0 74 55.4
Aqoxy3G03214 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 6.6e-13 80.1 78 55.1
Cre03.g196450 Chlamydomonas reinhardtii HOM05D003743 ORTHO05D004311 4.2e-07 60.8 589 23.9
SEGI_28495 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 6.0e-06 57.0 69 53.6


User provided reference genes

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