Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62016021 Chenopodium quinoa HOM05D000161 ORTHO05D005857 3.9e-265 917.5 446 100.0
AUR62021226 Chenopodium quinoa HOM05D000161 ORTHO05D005857 5.3e-222 774.2 446 87.0
Ah.07g209030 Amaranthus hybridus HOM05D000161 ORTHO05D005857 1.6e-186 656.4 394 82.5
EL10Ac3g05707 Beta vulgaris HOM05D000161 ORTHO05D005857 3.8e-180 635.2 399 80.2
Hund11764 Selenicereus undatus HOM05D000161 ORTHO05D005857 2.1e-170 602.8 399 75.9
Ciclev10011903m.g Citrus clementina HOM05D000161 ORTHO05D005857 3.3e-163 578.9 400 71.8
CANSAT64G1800 Cannabis sativa HOM05D000161 ORTHO05D005857 5.5e-163 578.2 393 74.3
Sc13g0008500 Simmondsia chinensis HOM05D000161 ORTHO05D005857 4.7e-162 575.1 352 78.7
Eucgr.K01354 Eucalyptus grandis HOM05D000161 ORTHO05D005857 1.0e-161 573.9 383 73.6
SGA_v2.0_scaffold423G51450 Striga asiatica HOM05D000161 ORTHO05D005857 1.0e-161 573.9 404 72.8
FvH4_6g39170 Fragaria vesca HOM05D000161 ORTHO05D005857 1.8e-161 573.2 383 74.9
TAR626G1695 Trochodendron aralioides HOM05D000161 ORTHO05D005857 2.3e-161 572.8 344 81.1
Nn7g38388 Nelumbo nucifera HOM05D000161 ORTHO05D005857 3.0e-161 572.4 403 72.2
FAN14G2022 Fragaria x ananassa HOM05D000161 ORTHO05D005857 4.0e-161 572.0 383 74.9
TAR624G0726 Trochodendron aralioides HOM05D000161 ORTHO05D005857 5.2e-161 571.6 405 73.3
ClCG07G011020 Citrullus lanatus HOM05D000161 ORTHO05D005857 1.5e-160 570.1 399 72.7
FAN05G2261 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.5e-160 570.1 384 74.5
PGR044G2307 Punica granatum HOM05D000161 ORTHO05D005857 1.5e-160 570.1 368 77.2
RcHm_v2.0_Chr2g0153001 Rosa chinensis HOM05D000161 ORTHO05D005857 1.5e-160 570.1 347 80.1
FAN09G1815 Fragaria x ananassa HOM05D000161 ORTHO05D005857 2.0e-160 569.7 383 74.9
Atru.chr8.1036 Acer truncatum HOM05D000161 ORTHO05D005857 4.4e-160 568.5 399 71.9
MD17G1131200 Malus domestica HOM05D000161 ORTHO05D005857 4.4e-160 568.5 355 78.9
PSO478G0506 Papaver somniferum HOM05D000161 ORTHO05D005857 4.4e-160 568.5 408 71.1
Phvul.008G289900 Phaseolus vulgaris HOM05D000161 ORTHO05D005857 4.4e-160 568.5 388 74.0
FAN02G1171 Fragaria x ananassa HOM05D000161 ORTHO05D005857 5.7e-160 568.2 384 74.5
PSO017G6394 Papaver somniferum HOM05D000161 ORTHO05D005857 5.7e-160 568.2 407 70.5
Glyma.14G003200 Glycine max HOM05D000161 ORTHO05D005857 7.5e-160 567.8 366 76.8
Manes.16G000600 Manihot esculenta HOM05D000161 ORTHO05D005857 1.3e-159 567.0 340 79.4
Potri.011G023900 Populus trichocarpa HOM05D000161 ORTHO05D005857 1.3e-159 567.0 396 72.2
Lj3g0003708 Lotus japonicus HOM05D000161 ORTHO05D005857 1.7e-159 566.6 404 71.5
Medtr5g098800 Medicago truncatula HOM05D000161 ORTHO05D005857 2.8e-159 565.8 374 75.7
THA.LOC104826018 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 2.8e-159 565.8 345 79.4
arahy.Tifrunner.gnm1.ann1.S9CZ9A Arachis hypogaea HOM05D000161 ORTHO05D005857 3.7e-159 565.5 372 76.3
Prupe.3G183400 Prunus persica HOM05D000161 ORTHO05D005857 3.7e-159 565.5 355 78.3
arahy.Tifrunner.gnm1.ann1.DVM8T3 Arachis hypogaea HOM05D000161 ORTHO05D005857 4.9e-159 565.1 371 76.0
LjContig00081g0009344 Lotus japonicus HOM05D000161 ORTHO05D005857 4.9e-159 565.1 398 71.1
MD09G1144600 Malus domestica HOM05D000161 ORTHO05D005857 6.3e-159 564.7 355 78.6
Sabra11G0014900 Salix brachista HOM05D000161 ORTHO05D005857 6.3e-159 564.7 340 80.0
DCAR_024972 Daucus carota HOM05D000161 ORTHO05D005857 8.3e-159 564.3 340 80.6
TWI60G0112 Tripterygium wilfordii HOM05D000161 ORTHO05D005857 8.3e-159 564.3 405 71.4
Dinv05290 Davidia involucrata HOM05D000161 ORTHO05D005857 1.1e-158 563.9 344 80.2
CiPaw.06G002700 Carya illinoinensis HOM05D000161 ORTHO05D005857 1.4e-158 563.5 348 79.0
Haze_00005 Corylus avellana HOM05D000161 ORTHO05D005857 3.1e-158 562.4 396 71.0
ECA240G1954 Erigeron canadensis HOM05D000161 ORTHO05D005857 3.1e-158 562.4 340 80.3
Carub.0006s3385 Capsella rubella HOM05D000161 ORTHO05D005857 7.0e-158 561.2 391 73.4
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 9.2e-158 560.8 398 71.4
Nitab4.5_0011255g0010 Nicotiana tabacum HOM05D000161 ORTHO05D005857 9.2e-158 560.8 408 71.8
PSO384G2739 Papaver somniferum HOM05D000161 ORTHO05D005857 9.2e-158 560.8 368 75.3
QL04p064793 Quercus lobata HOM05D000161 ORTHO05D005857 9.2e-158 560.8 349 79.1
CSS0003887 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 1.6e-157 560.1 352 77.6
MBI18_g38427_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D005857 1.6e-157 560.1 388 73.5
TPR.G35901 Trifolium pratense HOM05D000161 ORTHO05D005857 2.0e-157 559.7 368 76.4
Cfa016257 Carpinus fangiana HOM05D000161 ORTHO05D005857 2.7e-157 559.3 397 70.8
Gorai.004G062500 Gossypium raimondii HOM05D000161 ORTHO05D005857 3.5e-157 558.9 395 70.1
Psat2g001760 Pisum sativum HOM05D000161 ORTHO05D005857 3.5e-157 558.9 401 71.3
AT1G03475 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 4.5e-157 558.5 389 72.0
CsaV3_4G007220 Cucumis sativus L. HOM05D000161 ORTHO05D005857 4.5e-157 558.5 395 72.2
Ca_06491_v3 Cicer arietinum L. HOM05D000161 ORTHO05D005857 7.8e-157 557.8 372 75.8
QL04p064724 Quercus lobata HOM05D000161 ORTHO05D005857 7.8e-157 557.8 386 72.5
CARHR002850 Cardamine hirsuta HOM05D000161 ORTHO05D005857 1.0e-156 557.4 398 71.1
Rhsim02G0171600 Rhododendron simsii HOM05D000161 ORTHO05D005857 1.0e-156 557.4 349 78.8
Gohir.A08G050600 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.3e-156 557.0 395 69.9
Sp1g02440 Schrenkiella parvula HOM05D000161 ORTHO05D005857 1.7e-156 556.6 349 76.8
Sed0024620 Sechium edule HOM05D000161 ORTHO05D005857 2.3e-156 556.2 404 71.5
Nitab4.5_0000075g0030 Nicotiana tabacum HOM05D000161 ORTHO05D005857 5.0e-156 555.1 414 70.5
HanXRQChr03g0090181 Helianthus annuus HOM05D000161 ORTHO05D005857 6.6e-156 554.7 406 70.9
Peaxi162Scf00005g00134 Petunia axillaris HOM05D000161 ORTHO05D005857 6.6e-156 554.7 403 71.7
vmacro11023 Vaccinium macrocarpon HOM05D000161 ORTHO05D005857 8.6e-156 554.3 380 72.4
AL1G12980 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 1.1e-155 553.9 398 70.6
Thhalv10007888m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 1.5e-155 553.5 344 77.3
Sopen10g001130 Solanum pennellii HOM05D000161 ORTHO05D005857 2.5e-155 552.7 415 68.0
PGSC0003DMG400011264 Solanum tuberosum HOM05D000161 ORTHO05D005857 2.5e-155 552.7 349 77.4
BcaB02g06929 Brassica carinata HOM05D000161 ORTHO05D005857 3.3e-155 552.4 343 77.3
Migut.M02037 Erythranthe guttata HOM05D000161 ORTHO05D005857 3.3e-155 552.4 386 72.0
Aqoxy1G01372 Aquilegia oxysepala HOM05D000161 ORTHO05D005857 5.6e-155 551.6 399 69.9
Solyc10g005110.3 Solanum lycopersicum HOM05D000161 ORTHO05D005857 5.6e-155 551.6 415 68.0
A10p02010 Brassica napus HOM05D000161 ORTHO05D005857 7.3e-155 551.2 399 70.2
BcaC05g24526 Brassica carinata HOM05D000161 ORTHO05D005857 9.5e-155 550.8 403 69.5
BolC5t28975H Brassica oleracea HOM05D000161 ORTHO05D005857 9.5e-155 550.8 403 69.5
CAN.G465.6 Capsicum annuum HOM05D000161 ORTHO05D005857 9.5e-155 550.8 349 76.5
BraA09t42165Z Brassica rapa HOM05D000161 ORTHO05D005857 1.6e-154 550.1 358 75.1
Carub.0001s0261 Capsella rubella HOM05D000161 ORTHO05D005857 2.8e-154 549.3 406 68.5
BraA10t42474Z Brassica rapa HOM05D000161 ORTHO05D005857 3.6e-154 548.9 399 69.9
A09p68290 Brassica napus HOM05D000161 ORTHO05D005857 4.7e-154 548.5 358 74.9
C05p01960 Brassica napus HOM05D000161 ORTHO05D005857 4.7e-154 548.5 405 70.1
Duzib138G0552 Durio zibethinus HOM05D000161 ORTHO05D005857 4.7e-154 548.5 399 69.2
SalBow8G0095 Salvia bowleyana HOM05D000161 ORTHO05D005857 8.0e-154 547.7 371 74.1
HPP92_026322 Vanilla planifolia HOM05D000161 ORTHO05D005857 8.0e-154 547.7 403 69.7
CDE02G0797 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 1.0e-153 547.4 401 69.8
Lj6A29G59 Lonicera japonica HOM05D000161 ORTHO05D005857 3.1e-153 545.8 342 78.4
BcaC07g42252 Brassica carinata HOM05D000161 ORTHO05D005857 1.2e-152 543.9 396 70.2
C08p52750 Brassica napus HOM05D000161 ORTHO05D005857 1.2e-152 543.9 399 69.7
Zm00001eb071140 Zea mays HOM05D000161 ORTHO05D005857 1.5e-152 543.5 357 74.2
BcaC07g42243 Brassica carinata HOM05D000161 ORTHO05D005857 4.4e-152 542.0 399 69.4
C08p52850 Brassica napus HOM05D000161 ORTHO05D005857 5.8e-152 541.6 399 69.4
Thecc.01G176100 Theobroma cacao HOM05D000161 ORTHO05D005857 5.8e-152 541.6 365 73.2
CSS0041680 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 7.5e-152 541.2 345 77.1
Lsat_1_v5_gn_3_111240 Lactuca sativa HOM05D000161 ORTHO05D005857 1.7e-151 540.0 439 66.1
Lalb_Chr04g0247041 Lupinus albus HOM05D000161 ORTHO05D005857 1.7e-151 540.0 399 68.4
Hma1.2p1_0166F.1_g073470 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 2.2e-151 539.7 344 76.7
GSVIVG01015906001 Vitis vinifera HOM05D000161 ORTHO05D005857 2.9e-151 539.3 312 83.3
MSTRG.16382 Avicennia marina HOM05D000161 ORTHO05D005857 3.7e-151 538.9 388 69.6
unitig_32.g11549 Utricularia gibba HOM05D000161 ORTHO05D005857 3.7e-151 538.9 376 71.8
Gorai.007G172100 Gossypium raimondii HOM05D000161 ORTHO05D005857 4.9e-151 538.5 396 69.4
Os04g0610800 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D005857 4.9e-151 538.5 351 74.9
ATR0763G015 Amborella trichopoda HOM05D000161 ORTHO05D005857 6.4e-151 538.1 391 70.1
AL6G49730 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 1.1e-147 527.3 307 81.8
Gohir.A07G184900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 5.6e-147 525.0 393 67.4
Gohir.D08G060400 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.1e-145 520.8 305 80.0
BolC8t52801H Brassica oleracea HOM05D000161 ORTHO05D005857 2.0e-144 516.5 403 67.5
Oeu008737.1 Olea europaea HOM05D000161 ORTHO05D005857 7.8e-141 504.6 528 53.2
Oeu008990.3 Olea europaea HOM05D000161 ORTHO05D005857 7.8e-141 504.6 474 58.2
Cc09_g04450 Coffea canephora HOM05D000161 ORTHO05D005857 2.5e-139 499.6 527 53.7
Sp6g03240 Schrenkiella parvula HOM05D000161 ORTHO05D005857 1.1e-137 494.2 390 67.4
MELO3C016226.2 Cucumis melo HOM05D000161 ORTHO05D005857 1.8e-137 493.4 390 66.2
Pp3c22_5800 Physcomitrium patens HOM05D000161 ORTHO05D005857 7.5e-136 488.0 364 66.8
Pp3c21_600 Physcomitrium patens HOM05D000161 ORTHO05D005857 2.2e-135 486.5 352 67.6
SMO354G0013 Selaginella moellendorffii HOM05D000161 ORTHO05D005857 4.9e-135 485.3 311 73.6
Cpa.g.sc417.1 Carica papaya HOM05D000161 ORTHO05D005857 6.4e-135 485.0 396 63.1
AagrBONN_evm.TU.Sc2ySwM_228.282 Anthoceros agrestis HOM05D000161 ORTHO05D005857 1.9e-134 483.4 353 68.0
Mapoly0039s0053 Marchantia polymorpha HOM05D000161 ORTHO05D005857 3.5e-133 479.2 354 67.5
Gorai.001G214600 Gossypium raimondii HOM05D000161 ORTHO05D005857 1.7e-124 450.3 344 65.1
MCO07G306 Micromonas commoda HOM05D000161 ORTHO05D005857 1.8e-121 440.3 351 62.7
BcaC07g42260 Brassica carinata HOM05D000161 ORTHO05D005857 2.8e-114 416.4 247 78.1
PRCOL_00002331 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 1.4e-113 414.1 314 63.4
Cre02.g085450 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 9.0e-113 411.4 364 56.9
Zm00001eb430670 Zea mays HOM05D000161 ORTHO05D005857 1.3e-111 407.5 274 73.4
CDE05G1536 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 7.1e-110 401.7 400 56.8
Gohir.D11G161800 Gossypium hirsutum HOM05D000161 ORTHO05D005857 3.9e-108 396.0 321 65.1
THA.LOC104815952 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 1.1e-97 361.3 243 73.3
Gohir.A11G154900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 8.4e-95 351.7 254 69.7
Cfa025537 Carpinus fangiana HOM05D000161 ORTHO05D005857 5.7e-91 339.0 387 47.5
CBR_g45705 Chara braunii HOM05D000161 ORTHO05D005857 1.8e-89 334.0 349 51.6
Thhalv10029252m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 5.3e-89 332.4 216 74.1
Gohir.D07G191700 Gossypium hirsutum HOM05D000161 ORTHO05D005857 3.8e-87 326.2 201 75.1
AT4G03205 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 2.8e-82 310.1 186 80.6
Haze_26605 Corylus avellana HOM05D000161 ORTHO05D005857 6.5e-79 298.9 292 51.4
Mapoly0070s0075 Marchantia polymorpha HOM05D000161 ORTHO05D005857 6.3e-58 229.2 324 39.8
CBR_g23778 Chara braunii HOM05D000161 ORTHO05D005857 4.5e-56 223.0 347 36.9
AagrBONN_evm.TU.Sc2ySwM_228.3299 Anthoceros agrestis HOM05D000161 ORTHO05D005857 1.3e-55 221.5 332 39.2
MCO09G037 Micromonas commoda HOM05D000161 ORTHO05D005857 5.0e-55 219.5 315 41.0
arahy.Tifrunner.gnm1.ann1.I5BL8A Arachis hypogaea HOM05D000161 ORTHO05D005857 6.5e-55 219.2 179 63.1
Pp3c15_4200 Physcomitrium patens HOM05D000161 ORTHO05D005857 1.9e-54 217.6 423 35.0
PSO339G2005 Papaver somniferum HOM05D000161 ORTHO05D005857 9.4e-54 215.3 104 95.2
PRCOL_00006910 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 7.5e-51 205.7 332 37.3
Cre02.g092600 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 6.3e-50 202.6 325 37.2
Hma1.2p1_2159F.1_g315510 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 1.2e-45 188.3 114 80.7
arahy.Tifrunner.gnm1.ann1.0Q00UB Arachis hypogaea HOM05D000235 ORTHO05D000147 3.4e-43 180.3 155 60.0
SEGI_02394 Sequoiadendron giganteum HOM05D000161 ORTHO05D005857 5.4e-41 172.9 262 38.2
arahy.Tifrunner.gnm1.ann1.F4AYRR Arachis hypogaea HOM05D000161 ORTHO05D005857 1.8e-28 131.3 92 70.7
SHI00986 Sapria himalayana HOM05D000161 ORTHO05D005857 2.1e-24 117.9 91 62.6
CARHR251640 Cardamine hirsuta HOM05D000161 ORTHO05D116224 3.6e-21 107.1 51 86.3
arahy.Tifrunner.gnm1.ann1.0Z8MR5 Arachis hypogaea HOM05D000161 ORTHO05D003903 7.6e-19 99.4 62 79.0
RcHm_v2.0_Chr6g0298511 Rosa chinensis HOM05D000161 ORTHO05D340689 3.5e-16 90.5 153 41.8
CAN.G129.44 Capsicum annuum HOM05D000161 ORTHO05D005857 1.7e-15 88.2 93 54.8
CARHR251650 Cardamine hirsuta HOM05D000161 ORTHO05D115956 4.3e-14 83.6 100 53.0
arahy.Tifrunner.gnm1.ann1.6HI1EE Arachis hypogaea HOM05D000161 ORTHO05D005857 5.6e-14 83.2 49 75.5
arahy.Tifrunner.gnm1.ann1.1EXH41 Arachis hypogaea HOM05D000161 ORTHO05D003770 7.6e-11 72.8 33 84.8
arahy.Tifrunner.gnm1.ann1.DD88BD Arachis hypogaea HOM05D000161 ORTHO05D086871 2.7e-08 64.3 34 70.6


User provided reference genes

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