Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62015247 Chenopodium quinoa HOM05D004869 ORTHO05D005893 0.0e+00 1612.4 787 100.0
AUR62018045 Chenopodium quinoa HOM05D004869 ORTHO05D005893 0.0e+00 1569.3 787 96.7
EL10Ac3g06663 Beta vulgaris HOM05D004869 ORTHO05D005893 0.0e+00 1386.7 835 81.6
Hund20507 Selenicereus undatus HOM05D004869 ORTHO05D005893 0.0e+00 1341.6 835 79.0
Ah.04g153720 Amaranthus hybridus HOM05D004869 ORTHO05D005893 0.0e+00 1302.0 815 78.7
Sc19g0005490 Simmondsia chinensis HOM05D004869 ORTHO05D005893 0.0e+00 1212.2 789 74.7
Dinv44350 Davidia involucrata HOM05D004869 ORTHO05D005893 0.0e+00 1200.3 819 71.9
QL06p010392 Quercus lobata HOM05D004869 ORTHO05D005893 0.0e+00 1198.0 835 70.9
CiPaw.01G145300 Carya illinoinensis HOM05D004869 ORTHO05D005893 0.0e+00 1197.2 834 70.7
Rhsim04G0226400 Rhododendron simsii HOM05D004869 ORTHO05D005893 0.0e+00 1194.5 835 69.9
Cfa015427 Carpinus fangiana HOM05D004869 ORTHO05D005893 0.0e+00 1193.7 835 70.3
Prupe.1G131800 Prunus persica HOM05D004869 ORTHO05D005893 0.0e+00 1193.3 817 71.7
vmacro08186 Vaccinium macrocarpon HOM05D004869 ORTHO05D005893 0.0e+00 1192.9 857 69.1
CANSAT78G0178 Cannabis sativa HOM05D004869 ORTHO05D005893 0.0e+00 1192.6 834 70.7
RcHm_v2.0_Chr4g0423401 Rosa chinensis HOM05D004869 ORTHO05D005893 0.0e+00 1190.6 811 72.1
MD13G1164300 Malus domestica HOM05D004869 ORTHO05D005893 0.0e+00 1190.3 817 70.9
MD16G1164100 Malus domestica HOM05D004869 ORTHO05D005893 0.0e+00 1187.6 825 70.8
GSVIVG01035107001 Vitis vinifera HOM05D004869 ORTHO05D005893 0.0e+00 1183.3 831 70.6
Actinidia40299 Actinidia chinensis HOM05D004869 ORTHO05D005893 0.0e+00 1180.2 807 71.3
Oeu016255.1 Olea europaea HOM05D004869 ORTHO05D005893 0.0e+00 1177.2 838 69.3
Thecc.04G289100 Theobroma cacao HOM05D004869 ORTHO05D005893 0.0e+00 1176.8 834 69.3
FvH4_4g18700 Fragaria vesca HOM05D004869 ORTHO05D005893 0.0e+00 1174.8 811 71.5
Atru.chr4.2905 Acer truncatum HOM05D004869 ORTHO05D005893 0.0e+00 1174.1 835 69.6
Hma1.2p1_1352F.1_g277460 Hydrangea macrophylla HOM05D004869 ORTHO05D005893 0.0e+00 1173.3 835 70.1
Potri.008G219000 Populus trichocarpa HOM05D004869 ORTHO05D005893 0.0e+00 1172.5 817 70.5
TWI73G0801 Tripterygium wilfordii HOM05D004869 ORTHO05D005893 0.0e+00 1172.1 831 69.4
COL.COLO4_13820 Corchorus olitorius HOM05D004869 ORTHO05D005893 0.0e+00 1171.8 835 69.7
Migut.N00074 Erythranthe guttata HOM05D004869 ORTHO05D005893 0.0e+00 1167.1 831 68.4
FAN12G0537 Fragaria x ananassa HOM05D004869 ORTHO05D005893 0.0e+00 1164.1 820 70.5
Lj6g0019427 Lotus japonicus HOM05D004869 ORTHO05D005893 0.0e+00 1162.5 828 69.7
Glyma.09G042000 Glycine max HOM05D004869 ORTHO05D005893 0.0e+00 1161.4 835 68.0
Solyc05g054370.2 Solanum lycopersicum HOM05D004869 ORTHO05D005893 0.0e+00 1159.4 834 68.9
Nitab4.5_0008670g0020 Nicotiana tabacum HOM05D004869 ORTHO05D005893 0.0e+00 1159.1 819 69.6
Duzib212G0051 Durio zibethinus HOM05D004869 ORTHO05D005893 0.0e+00 1156.0 834 68.6
Cpa.g.sc50.161 Carica papaya HOM05D004869 ORTHO05D005893 0.0e+00 1154.8 834 68.2
Sopen05g032860 Solanum pennellii HOM05D004869 ORTHO05D005893 0.0e+00 1154.0 834 68.5
THA.LOC104802695 Tarenaya hassleriana HOM05D004869 ORTHO05D005893 0.0e+00 1154.0 834 67.7
FAN17G0377 Fragaria x ananassa HOM05D004869 ORTHO05D005893 0.0e+00 1153.3 828 69.4
Sabra10G0006600 Salix brachista HOM05D004869 ORTHO05D005893 0.0e+00 1152.9 841 69.0
TWI53G1493 Tripterygium wilfordii HOM05D004869 ORTHO05D005893 0.0e+00 1152.5 832 68.8
Potri.010G010448 Populus trichocarpa HOM05D004869 ORTHO05D005893 0.0e+00 1151.3 835 69.2
FAN12G1313 Fragaria x ananassa HOM05D004869 ORTHO05D005893 0.0e+00 1150.6 850 68.1
Nitab4.5_0000695g0140 Nicotiana tabacum HOM05D004869 ORTHO05D005893 0.0e+00 1150.6 819 69.0
Aqoxy5G00789 Aquilegia oxysepala HOM05D004869 ORTHO05D005893 0.0e+00 1149.8 838 68.6
PGSC0003DMG400023436 Solanum tuberosum HOM05D004869 ORTHO05D005893 0.0e+00 1149.8 834 68.5
Glyma.15G150900 Glycine max HOM05D004869 ORTHO05D005893 0.0e+00 1149.4 835 67.5
VMungo1309G2596 Vigna mungo HOM05D004869 ORTHO05D005893 0.0e+00 1148.7 835 67.3
MELO3C006684.2 Cucumis melo HOM05D004869 ORTHO05D005893 0.0e+00 1146.3 834 69.1
Phvul.009G250700 Phaseolus vulgaris HOM05D004869 ORTHO05D005893 0.0e+00 1146.3 835 67.5
ClCG05G006260 Citrullus lanatus HOM05D004869 ORTHO05D005893 0.0e+00 1143.6 834 68.6
PSO832G2232 Papaver somniferum HOM05D004869 ORTHO05D005893 0.0e+00 1143.6 838 67.9
AT3G06810 Arabidopsis thaliana HOM05D004869 ORTHO05D005893 0.0e+00 1142.9 832 66.6
CsaV3_3G014880 Cucumis sativus L. HOM05D004869 ORTHO05D005893 0.0e+00 1142.9 834 68.8
Gorai.005G061800 Gossypium raimondii HOM05D004869 ORTHO05D005893 0.0e+00 1142.1 832 67.4
Sed0001345 Sechium edule HOM05D004869 ORTHO05D005893 0.0e+00 1140.6 817 69.2
Carub.0003s0635 Capsella rubella HOM05D004869 ORTHO05D005893 0.0e+00 1140.2 832 66.6
ECA246G3101 Erigeron canadensis HOM05D004869 ORTHO05D005893 0.0e+00 1140.2 834 67.4
Thhalv10020074m.g Eutrema salsugineum HOM05D004869 ORTHO05D005893 0.0e+00 1139.0 832 66.6
AL3G17930 Arabidopsis lyrata HOM05D004869 ORTHO05D005893 0.0e+00 1138.6 832 66.3
Manes.03G198800 Manihot esculenta HOM05D004869 ORTHO05D005893 0.0e+00 1138.6 790 71.0
Sopen01g027900 Solanum pennellii HOM05D004869 ORTHO05D005893 0.0e+00 1135.6 815 68.0
Cc03_g01500 Coffea canephora HOM05D004869 ORTHO05D005893 0.0e+00 1134.0 835 68.0
HanXRQChr17g0535991 Helianthus annuus HOM05D004869 ORTHO05D005893 0.0e+00 1134.0 834 68.0
PSO210G1050 Papaver somniferum HOM05D004869 ORTHO05D005893 0.0e+00 1132.9 837 67.4
Solyc01g066310.4 Solanum lycopersicum HOM05D004869 ORTHO05D005893 0.0e+00 1132.1 815 68.0
Gohir.A02G051000 Gossypium hirsutum HOM05D004869 ORTHO05D005893 0.0e+00 1129.8 811 68.1
Lalb_Chr20g0117401 Lupinus albus HOM05D004869 ORTHO05D005893 0.0e+00 1129.4 835 66.7
Aa31LG5G17400 Aethionema arabicum HOM05D004869 ORTHO05D005893 0.0e+00 1128.2 832 65.6
Lsat_1_v5_gn_3_21560 Lactuca sativa HOM05D004869 ORTHO05D005893 0.0e+00 1128.2 867 65.5
Lj6A681T39 Lonicera japonica HOM05D004869 ORTHO05D005893 0.0e+00 1128.2 831 68.1
Peaxi162Scf00065g01213 Petunia axillaris HOM05D004869 ORTHO05D005893 0.0e+00 1128.2 817 67.6
Sp3g05780 Schrenkiella parvula HOM05D004869 ORTHO05D005893 0.0e+00 1127.9 832 66.2
A05p41290 Brassica napus HOM05D004869 ORTHO05D005893 0.0e+00 1127.1 828 66.2
arahy.Tifrunner.gnm1.ann1.ZXWI6N Arachis hypogaea HOM05D004869 ORTHO05D005893 0.0e+00 1125.2 835 66.5
C05p60510 Brassica napus HOM05D004869 ORTHO05D005893 0.0e+00 1124.4 828 66.2
BolC5t34705H Brassica oleracea HOM05D004869 ORTHO05D005893 0.0e+00 1124.4 828 66.2
Lalb_Chr15g0086081 Lupinus albus HOM05D004869 ORTHO05D005893 0.0e+00 1122.8 834 66.9
BraA05t22852Z Brassica rapa HOM05D004869 ORTHO05D005893 0.0e+00 1122.5 828 66.1
DCAR_027053 Daucus carota HOM05D004869 ORTHO05D005893 0.0e+00 1120.1 811 67.9
CARHR081430 Cardamine hirsuta HOM05D004869 ORTHO05D005893 0.0e+00 1119.4 832 65.4
Gohir.D02G055900 Gossypium hirsutum HOM05D004869 ORTHO05D005893 0.0e+00 1117.4 832 66.5
CAN.G449.73 Capsicum annuum HOM05D004869 ORTHO05D005893 0.0e+00 1116.3 834 65.9
Ciclev10004291m.g Citrus clementina HOM05D004869 ORTHO05D005893 0.0e+00 1116.3 834 67.3
CDE11G0521 Ceratophyllum demersum HOM05D004869 ORTHO05D005893 0.0e+00 1112.4 834 66.1
Ca_01910_v3 Cicer arietinum L. HOM05D004869 ORTHO05D005893 0.0e+00 1112.1 820 66.8
Ciclev10004342m.g Citrus clementina HOM05D004869 ORTHO05D005893 0.0e+00 1108.6 834 66.7
SGA_v2.0_scaffold119G32706 Striga asiatica HOM05D004869 ORTHO05D005893 0.0e+00 1102.0 799 67.3
Nn3g21544 Nelumbo nucifera HOM05D004869 ORTHO05D005893 0.0e+00 1092.4 778 69.4
ATR0693G241 Amborella trichopoda HOM05D004869 ORTHO05D005893 0.0e+00 1091.3 835 66.5
Os07g0675000 Oryza sativa ssp. japonica HOM05D004869 ORTHO05D005893 0.0e+00 1090.9 815 66.3
Zm00001eb111400 Zea mays HOM05D004869 ORTHO05D005893 0.0e+00 1087.8 838 65.4
TAR365G0733 Trochodendron aralioides HOM05D004869 ORTHO05D005893 1.0e-300 1036.6 842 64.4
HPP92_003120 Vanilla planifolia HOM05D004869 ORTHO05D005893 2.4e-294 1015.4 838 62.6
MBI18_g44774_MAGBIO Magnolia biondii HOM05D004869 ORTHO05D005893 2.9e-292 1008.4 802 64.0
Eucgr.B01578 Eucalyptus grandis HOM05D004869 ORTHO05D005893 9.8e-288 993.4 725 68.3
Haze_01165 Corylus avellana HOM05D004869 ORTHO05D005893 5.0e-284 981.1 790 64.8
Pp3c18_21710 Physcomitrium patens HOM05D004869 ORTHO05D005893 8.9e-273 943.7 832 58.5
Pp3c22_4180 Physcomitrium patens HOM05D004869 ORTHO05D005893 9.8e-272 940.3 833 57.4
arahy.Tifrunner.gnm1.ann1.YH0B1H Arachis hypogaea HOM05D004869 ORTHO05D005893 1.1e-270 936.8 795 61.1
SMO202G0033 Selaginella moellendorffii HOM05D004869 ORTHO05D005893 2.8e-266 922.2 833 56.2
Mapoly0111s0015 Marchantia polymorpha HOM05D004869 ORTHO05D005893 8.6e-260 900.6 833 54.6
SMO169G0300 Selaginella moellendorffii HOM05D004869 ORTHO05D005893 1.7e-231 806.6 854 50.9
AagrBONN_evm.TU.Sc2ySwM_228.2629 Anthoceros agrestis HOM05D004869 ORTHO05D005893 5.4e-230 801.6 713 57.1
CBR_g54445 Chara braunii HOM05D004869 ORTHO05D005893 5.6e-227 791.6 925 48.5
TPR.G26039 Trifolium pratense HOM05D004869 ORTHO05D005893 1.8e-212 743.4 591 60.9
unitig_26.g10563 Utricularia gibba HOM05D004869 ORTHO05D005893 1.4e-209 733.8 488 73.0
DCAR_000477 Daucus carota HOM05D004869 ORTHO05D005893 9.0e-209 731.1 484 72.3
BcaNung06666 Brassica carinata HOM05D004869 ORTHO05D005893 2.1e-205 719.9 491 71.7
CSS0035117 Camellia sinensis var. sinensis HOM05D004869 ORTHO05D005893 8.8e-204 714.5 463 74.9
SHI00220 Sapria himalayana HOM05D004869 ORTHO05D005893 3.8e-199 699.1 620 56.9
Cre16.g675850 Chlamydomonas reinhardtii HOM05D004869 ORTHO05D005893 1.6e-197 693.7 957 42.5
Psat1g156400 Pisum sativum HOM05D004869 ORTHO05D005893 2.3e-196 689.9 577 58.4
Medtr2g435800 Medicago truncatula HOM05D004869 ORTHO05D005893 2.8e-194 682.9 569 59.1
PRCOL_00002960 Prasinoderma coloniale HOM05D004869 ORTHO05D005893 3.1e-161 573.2 801 42.4
BcaC05g30559 Brassica carinata HOM05D004869 ORTHO05D005893 2.9e-146 523.5 627 47.4
Oeu031983.1 Olea europaea HOM05D004869 ORTHO05D005893 1.3e-143 514.6 428 60.5
MCO01G041 Micromonas commoda HOM05D004869 ORTHO05D005893 6.6e-135 485.7 425 59.3
Hma1.2p1_0804F.1_g221110 Hydrangea macrophylla HOM05D004869 ORTHO05D005893 1.3e-127 461.5 385 60.5
MBI18_g37159_MAGBIO Magnolia biondii HOM05D004869 ORTHO05D005893 3.0e-127 460.3 422 61.4
Cfa024444 Carpinus fangiana HOM05D004869 ORTHO05D005893 4.9e-106 389.8 411 49.6
Cfa022681 Carpinus fangiana HOM05D004869 ORTHO05D005893 3.7e-101 373.6 425 46.4
Medtr2g436030 Medicago truncatula HOM05D004869 ORTHO05D005893 2.6e-99 367.5 215 83.7
QL06p007479 Quercus lobata HOM05D004869 ORTHO05D005893 1.1e-97 362.1 233 77.7
DCAR_023301 Daucus carota HOM05D004869 ORTHO05D005893 1.3e-95 355.1 300 57.3
Nn1g04010 Nelumbo nucifera HOM05D004869 ORTHO05D005893 1.0e-87 328.9 190 83.7
Rhsim04G0225600 Rhododendron simsii HOM05D004869 ORTHO05D005893 1.7e-77 295.0 318 51.9
TPR.G13211 Trifolium pratense HOM05D004869 ORTHO05D005893 5.0e-74 283.5 162 88.3
SEGI_30643 Sequoiadendron giganteum HOM05D004869 ORTHO05D005893 1.5e-65 255.4 191 64.9
QL93p0200_0027 Quercus lobata HOM05D004869 ORTHO05D005893 3.5e-59 234.2 157 77.1
Rhsim04G0225700 Rhododendron simsii HOM05D004869 ORTHO05D005893 4.9e-45 187.2 133 72.2
Lsat_1_v5_gn_3_21640 Lactuca sativa HOM05D004869 ORTHO05D005893 4.3e-41 174.1 138 68.1
unitig_26.g10564 Utricularia gibba HOM05D004869 ORTHO05D005893 3.6e-40 171.0 213 45.5
Rhsim04G0226200 Rhododendron simsii HOM05D004869 ORTHO05D005893 5.2e-39 167.2 150 61.3
RcHm_v2.0_Chr3g0480631 Rosa chinensis HOM05D004869 ORTHO05D005893 1.7e-37 162.2 119 63.9
MCO01G771 Micromonas commoda HOM05D004869 ORTHO05D005893 5.0e-34 150.6 326 32.8
RcHm_v2.0_Chr6g0311831 Rosa chinensis HOM05D004869 ORTHO05D005893 4.1e-28 131.0 115 57.4
SEGI_32872 Sequoiadendron giganteum HOM05D004869 ORTHO05D005893 2.1e-27 128.6 89 71.9
HanXRQChr01g0024801 Helianthus annuus HOM05D004869 ORTHO05D005893 1.0e-26 126.3 180 39.4
SEGI_25692 Sequoiadendron giganteum HOM05D004869 ORTHO05D005893 3.0e-26 124.8 101 58.4
SalBow5G3485 Salvia bowleyana HOM05D004869 ORTHO05D005893 1.6e-24 119.0 75 81.3
AagrBONN_evm.TU.Sc2ySwM_117.3343 Anthoceros agrestis HOM05D001528 ORTHO05D006464 4.0e-23 114.4 385 28.6
SMO367G1086 Selaginella moellendorffii HOM05D001528 ORTHO05D006464 3.4e-22 111.3 287 31.0
Lsat_1_v5_gn_5_23780 Lactuca sativa HOM05D004869 ORTHO05D005893 4.4e-22 110.9 117 50.4
Haze_26447 Corylus avellana HOM05D001528 ORTHO05D006464 4.1e-20 104.4 342 28.9
Mapoly0154s0036 Marchantia polymorpha HOM05D001528 ORTHO05D006464 7.1e-20 103.6 282 30.5
TPR.G15436 Trifolium pratense HOM05D004869 ORTHO05D005893 1.2e-19 102.8 81 63.0
BNapus_Darmor_BZH_scaffold_117p00100 Brassica napus HOM05D004869 ORTHO05D005893 2.1e-19 102.1 73 72.6
MBI18_g23297_MAGBIO Magnolia biondii HOM05D004869 ORTHO05D005893 2.1e-19 102.1 91 63.7
MBI18_g46557_MAGBIO Magnolia biondii HOM05D004869 ORTHO05D005893 2.7e-19 101.7 91 62.6
Pp3c3_14940 Physcomitrium patens HOM05D001528 ORTHO05D006464 2.7e-19 101.7 279 29.4
PGSC0003DMG400027831 Solanum tuberosum HOM05D004869 ORTHO05D005893 2.3e-18 98.6 59 79.7
BolC1t05585H Brassica oleracea HOM05D004869 ORTHO05D005893 5.1e-18 97.4 65 78.5
PRCOL_00001565 Prasinoderma coloniale HOM05D001528 ORTHO05D006464 5.1e-18 97.4 285 29.1
Glyma.11G154423 Glycine max HOM05D001528 ORTHO05D006464 7.3e-17 93.6 281 28.1
AUR62025007 Chenopodium quinoa HOM05D001528 ORTHO05D006464 4.7e-16 90.9 326 26.4
PRCOL_00006365 Prasinoderma coloniale HOM05D001528 ORTHO05D006464 1.1e-15 89.7 318 26.4
TWI75G0049 Tripterygium wilfordii HOM05D001528 ORTHO05D006464 1.1e-15 89.7 282 28.7
Cfa026122 Carpinus fangiana HOM05D001528 ORTHO05D006464 3.1e-15 88.2 287 26.1
Medtr0837s0010 Medicago truncatula HOM05D001528 ORTHO05D006464 4.0e-15 87.8 341 26.4
BcaC09g47921 Brassica carinata HOM05D004869 ORTHO05D005893 2.6e-14 85.1 57 77.2
PRCOL_00002017 Prasinoderma coloniale HOM05D001528 ORTHO05D006464 5.4e-12 77.4 285 26.3
PRCOL_00006254 Prasinoderma coloniale HOM05D001528 ORTHO05D006464 3.0e-10 71.6 299 24.4
Cfa027299 Carpinus fangiana HOM05D001528 ORTHO05D006464 5.1e-10 70.9 304 23.0
Lsat_1_v5_gn_4_34540 Lactuca sativa HOM05D004869 ORTHO05D005893 2.5e-09 68.6 91 44.0
MCO16G633 Micromonas commoda HOM05D001528 ORTHO05D006464 7.3e-09 67.0 297 24.2
Hma1.2p1_1662F.1_g296280 Hydrangea macrophylla HOM05D004869 ORTHO05D005893 9.6e-09 66.6 53 56.6
AUR62006528 Chenopodium quinoa HOM05D001528 ORTHO05D006464 8.1e-08 63.5 319 23.5


User provided reference genes

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