Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62015172 Chenopodium quinoa HOM05D003810 ORTHO05D004416 0.0e+00 1088.9 560 100.0
AUR62017624 Chenopodium quinoa HOM05D003810 ORTHO05D004416 2.4e-304 1048.1 596 92.4
EL10Ac9g22878 Beta vulgaris HOM05D003810 ORTHO05D004416 1.0e-230 803.5 615 72.2
Ah.01g013210 Amaranthus hybridus HOM05D003810 ORTHO05D004416 4.2e-216 755.0 611 69.2
Sc14g0003560 Simmondsia chinensis HOM05D003810 ORTHO05D004416 1.5e-197 693.3 600 64.3
GSVIVG01014785001 Vitis vinifera HOM05D003810 ORTHO05D004416 4.5e-194 681.8 597 63.0
CSS0024914 Camellia sinensis var. sinensis HOM05D003810 ORTHO05D004416 1.8e-190 669.8 602 61.6
Rhsim04G0009500 Rhododendron simsii HOM05D003810 ORTHO05D004416 1.3e-182 643.7 596 59.7
Thecc.09G267400 Theobroma cacao HOM05D003810 ORTHO05D004416 6.3e-180 634.8 591 59.9
Gohir.D07G118250 Gossypium hirsutum HOM05D003810 ORTHO05D004416 1.5e-178 630.2 590 59.5
Nn2g14662 Nelumbo nucifera HOM05D003810 ORTHO05D004416 4.5e-178 628.6 583 60.4
Gorai.001G127200 Gossypium raimondii HOM05D003810 ORTHO05D004416 1.7e-177 626.7 591 59.7
Cc00_g20590 Coffea canephora HOM05D003810 ORTHO05D004416 6.5e-177 624.8 596 59.1
PSO063G0853 Papaver somniferum HOM05D003810 ORTHO05D004416 3.2e-176 622.5 607 58.3
HanXRQChr05g0160211 Helianthus annuus HOM05D003810 ORTHO05D004416 5.5e-176 621.7 591 58.5
Nitab4.5_0001622g0070 Nicotiana tabacum HOM05D003810 ORTHO05D004416 9.4e-176 620.9 593 59.4
Dinv40895 Davidia involucrata HOM05D003810 ORTHO05D004416 2.1e-175 619.8 574 61.1
PSO782G5597 Papaver somniferum HOM05D003810 ORTHO05D004416 3.6e-175 619.0 607 58.0
CAN.G492.44 Capsicum annuum HOM05D003810 ORTHO05D004416 6.1e-175 618.2 600 58.7
Hma1.2p1_0193F.1_g084130 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 6.1e-175 618.2 619 58.3
Duzib150G1314 Durio zibethinus HOM05D003810 ORTHO05D004416 1.4e-174 617.1 590 59.0
Nitab4.5_0000611g0250 Nicotiana tabacum HOM05D003810 ORTHO05D004416 6.7e-174 614.8 593 59.2
Lj3A773G17 Lonicera japonica HOM05D003810 ORTHO05D004416 1.7e-172 610.1 566 60.8
Peaxi162Scf00212g00616 Petunia axillaris HOM05D003810 ORTHO05D004416 1.4e-171 607.1 595 58.0
ATR0751G036 Amborella trichopoda HOM05D003810 ORTHO05D004416 2.4e-171 606.3 600 57.2
Solyc10g005900.3 Solanum lycopersicum HOM05D003810 ORTHO05D004416 5.3e-171 605.1 593 57.8
Sopen10g001850 Solanum pennellii HOM05D003810 ORTHO05D004416 5.3e-171 605.1 593 57.8
Aqoxy3G00950 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 9.1e-171 604.4 596 57.4
MSTRG.13036 Avicennia marina HOM05D003810 ORTHO05D004416 9.1e-171 604.4 595 57.1
vmacro22299 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 2.0e-170 603.2 728 50.3
Actinidia00838 Actinidia chinensis HOM05D003810 ORTHO05D004416 3.4e-170 602.4 551 61.2
MELO3C020474.2 Cucumis melo HOM05D003810 ORTHO05D004416 5.9e-170 601.7 598 57.2
CsaV3_4G027560 Cucumis sativus L. HOM05D003810 ORTHO05D004416 5.9e-170 601.7 603 57.2
DCAR_017597 Daucus carota HOM05D003810 ORTHO05D004416 5.9e-170 601.7 584 57.5
Cfa016940 Carpinus fangiana HOM05D003810 ORTHO05D004416 1.0e-169 600.9 602 56.5
Eucgr.J01409 Eucalyptus grandis HOM05D003810 ORTHO05D004416 5.0e-169 598.6 593 56.8
Sed0019869 Sechium edule HOM05D003810 ORTHO05D004416 6.5e-169 598.2 598 57.0
QL08p001596 Quercus lobata HOM05D003810 ORTHO05D004416 2.5e-168 596.3 611 55.5
Ciclev10007802m.g Citrus clementina HOM05D003810 ORTHO05D004416 4.2e-168 595.5 600 57.0
MBI15_g00877_MAGBIO Magnolia biondii HOM05D003810 ORTHO05D004416 9.4e-168 594.3 598 57.9
RcHm_v2.0_Chr7g0221221 Rosa chinensis HOM05D003810 ORTHO05D004416 1.2e-167 594.0 598 56.7
Haze_09895 Corylus avellana HOM05D003810 ORTHO05D004416 3.6e-167 592.4 612 55.7
CiPaw.11G208700 Carya illinoinensis HOM05D003810 ORTHO05D004416 1.1e-165 587.4 594 55.9
COL.COLO4_25217 Corchorus olitorius HOM05D003810 ORTHO05D004416 9.7e-165 584.3 593 55.6
CANSAT11G0157 Cannabis sativa HOM05D003810 ORTHO05D004416 1.2e-162 577.4 599 56.3
ECA246G2898 Erigeron canadensis HOM05D003810 ORTHO05D004416 4.5e-162 575.5 591 55.0
Aqoxy2G00893 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 1.0e-161 574.3 597 55.1
CDE04G2581 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 2.9e-161 572.8 572 57.9
Lj5g0018758 Lotus japonicus HOM05D003810 ORTHO05D004416 5.0e-161 572.0 593 55.6
ClCG04G003010 Citrullus lanatus HOM05D003810 ORTHO05D004416 1.9e-160 570.1 584 56.2
FAN04G0096 Fragaria x ananassa HOM05D003810 ORTHO05D004416 2.5e-160 569.7 595 55.1
Oeu062684.4 Olea europaea HOM05D003810 ORTHO05D004416 7.2e-160 568.2 692 50.3
MD15G1441400 Malus domestica HOM05D003810 ORTHO05D004416 9.4e-160 567.8 594 56.2
PGR042G2745 Punica granatum HOM05D003810 ORTHO05D004416 9.4e-160 567.8 602 53.8
vmacro09609 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 1.2e-159 567.4 707 49.2
Cpa.g.sc181.12 Carica papaya HOM05D003810 ORTHO05D004416 2.1e-159 566.6 564 58.9
Thhalv10011333m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 2.7e-159 566.2 594 54.9
Glyma.10G193000 Glycine max HOM05D003810 ORTHO05D004416 4.7e-159 565.5 560 56.2
Aa31LG10G490 Aethionema arabicum HOM05D003810 ORTHO05D004416 4.0e-158 562.4 593 55.3
Atru.chr2.3847 Acer truncatum HOM05D003810 ORTHO05D004416 2.0e-157 560.1 594 55.7
Medtr1g090110 Medicago truncatula HOM05D003810 ORTHO05D004416 2.0e-157 560.1 602 54.3
Ca_10408_v3 Cicer arietinum L. HOM05D003810 ORTHO05D004416 1.7e-156 557.0 620 52.6
AL1G63840 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 2.8e-156 556.2 593 54.8
Migut.H01729 Erythranthe guttata HOM05D003810 ORTHO05D004416 3.7e-156 555.8 593 53.0
Prupe.1G583500 Prunus persica HOM05D003810 ORTHO05D004416 6.3e-156 555.1 606 53.8
arahy.Tifrunner.gnm1.ann1.KKS8QY Arachis hypogaea HOM05D003810 ORTHO05D004416 1.1e-155 554.3 581 54.9
Phvul.007G134900 Phaseolus vulgaris HOM05D003810 ORTHO05D004416 1.8e-155 553.5 602 53.5
CARHR045410 Cardamine hirsuta HOM05D003810 ORTHO05D004416 2.4e-155 553.1 588 54.8
VMungo0720G2836 Vigna mungo HOM05D003810 ORTHO05D004416 5.3e-155 552.0 593 53.8
Atru.chr12.1053 Acer truncatum HOM05D003810 ORTHO05D004416 7.0e-155 551.6 594 55.2
Carub.0001s4426 Capsella rubella HOM05D003810 ORTHO05D004416 7.0e-155 551.6 592 54.4
Lsat_1_v5_gn_1_66020 Lactuca sativa HOM05D003810 ORTHO05D004416 4.5e-154 548.9 605 54.0
TPR.G13386 Trifolium pratense HOM05D003810 ORTHO05D004416 1.3e-153 547.4 591 54.0
Sp5g24310 Schrenkiella parvula HOM05D003810 ORTHO05D004416 3.8e-153 545.8 586 54.3
Psat6g170400 Pisum sativum HOM05D003810 ORTHO05D004416 1.9e-152 543.5 600 54.2
Glyma.20G197500 Glycine max HOM05D003810 ORTHO05D004416 2.5e-152 543.1 586 53.1
BcaB05g24435 Brassica carinata HOM05D003810 ORTHO05D004416 4.2e-152 542.3 586 54.1
THA.LOC104815683 Tarenaya hassleriana HOM05D003810 ORTHO05D004416 7.2e-152 541.6 598 53.7
Os08g0338200 Oryza sativa ssp. japonica HOM05D003810 ORTHO05D004416 1.0e-150 537.7 597 53.4
AT3G61420 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 5.2e-150 535.4 586 53.8
TWI23G0485 Tripterygium wilfordii HOM05D003810 ORTHO05D004416 6.8e-150 535.0 604 53.0
BcaC03g15064 Brassica carinata HOM05D003810 ORTHO05D004416 2.6e-149 533.1 587 53.3
A02p15760 Brassica napus HOM05D003810 ORTHO05D004416 2.6e-149 533.1 588 53.4
C02p26210 Brassica napus HOM05D003810 ORTHO05D004416 4.4e-149 532.3 587 53.3
BolC2t08687H Brassica oleracea HOM05D003810 ORTHO05D004416 4.4e-149 532.3 587 53.3
BraA02t06637Z Brassica rapa HOM05D003810 ORTHO05D004416 1.7e-148 530.4 588 53.2
FAN08G2973 Fragaria x ananassa HOM05D003810 ORTHO05D004416 2.2e-148 530.0 601 51.9
HPP92_028601 Vanilla planifolia HOM05D003810 ORTHO05D004416 2.2e-148 530.0 593 53.0
FAN18G3759 Fragaria x ananassa HOM05D003810 ORTHO05D004416 3.7e-148 529.3 719 46.2
Lj3C711T10 Lonicera japonica HOM05D003810 ORTHO05D004416 4.8e-148 528.9 483 61.7
Manes.02G224100 Manihot esculenta HOM05D003810 ORTHO05D004416 4.5e-146 522.3 546 55.9
arahy.Tifrunner.gnm1.ann1.60T2A8 Arachis hypogaea HOM05D003810 ORTHO05D004416 1.0e-145 521.2 578 52.8
Medtr6g071555 Medicago truncatula HOM05D003810 ORTHO05D004416 1.5e-144 517.3 603 51.7
AL5G43720 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 2.5e-144 516.5 586 52.7
FvH4_5g28910 Fragaria vesca HOM05D003810 ORTHO05D004416 7.2e-144 515.0 510 56.7
unitig_61.g26129 Utricularia gibba HOM05D003810 ORTHO05D004416 9.5e-144 514.6 593 51.6
Sabra07G0088100 Salix brachista HOM05D003810 ORTHO05D004416 1.8e-142 510.4 666 48.0
SGA_v2.0_scaffold42G15939 Striga asiatica HOM05D003810 ORTHO05D004416 3.5e-138 496.1 643 47.0
Dinv10375 Davidia involucrata HOM05D003810 ORTHO05D004416 1.0e-137 494.6 574 52.3
SGA_v2.0_scaffold146G36126 Striga asiatica HOM05D003810 ORTHO05D004416 1.7e-137 493.8 562 51.6
AT1G55750 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 5.6e-136 488.8 507 55.8
TAR629G3163 Trochodendron aralioides HOM05D003810 ORTHO05D004416 1.0e-129 468.0 442 59.7
Potri.007G107400 Populus trichocarpa HOM05D003810 ORTHO05D004416 1.7e-129 467.2 516 54.1
Aqoxy7G03331 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 6.8e-126 455.3 476 54.0
Lsat_1_v5_gn_9_33460 Lactuca sativa HOM05D003810 ORTHO05D004416 6.8e-126 455.3 595 47.9
Zm00001eb172700 Zea mays HOM05D003810 ORTHO05D004416 3.4e-125 453.0 471 55.2
Mapoly0009s0093 Marchantia polymorpha HOM05D003810 ORTHO05D004416 9.8e-125 451.4 611 46.5
Duzib168G0397 Durio zibethinus HOM05D003810 ORTHO05D004416 2.0e-122 443.7 429 57.8
Lj1A897G41 Lonicera japonica HOM05D003810 ORTHO05D004416 6.0e-122 442.2 400 62.0
FAN14G4445 Fragaria x ananassa HOM05D003810 ORTHO05D004416 4.3e-120 436.0 590 46.8
TAR627G1185 Trochodendron aralioides HOM05D003810 ORTHO05D004416 9.9e-117 424.9 369 65.0
AagrBONN_evm.TU.Sc2ySwM_117.3105 Anthoceros agrestis HOM05D003810 ORTHO05D004416 4.7e-111 406.0 604 43.0
Gohir.A07G114448 Gossypium hirsutum HOM05D003810 ORTHO05D004416 4.7e-111 406.0 355 63.9
Lalb_Chr06g0169751 Lupinus albus HOM05D003810 ORTHO05D004416 9.9e-109 398.3 384 56.8
Pp3c26_14480 Physcomitrium patens HOM05D003810 ORTHO05D004416 9.9e-109 398.3 595 40.2
FvH4_6g25000 Fragaria vesca HOM05D003810 ORTHO05D004416 9.2e-107 391.7 419 54.7
Prupe.5G213500 Prunus persica HOM05D003810 ORTHO05D004416 4.4e-101 372.9 471 49.3
BcaB07g33855 Brassica carinata HOM05D003810 ORTHO05D004416 4.9e-92 342.8 563 42.3
Potri.005G061432 Populus trichocarpa HOM05D003810 ORTHO05D004416 2.4e-91 340.5 373 55.5
Prupe.5G046900 Prunus persica HOM05D003810 ORTHO05D004416 7.9e-90 335.5 469 45.6
CiPaw.14G066900 Carya illinoinensis HOM05D003810 ORTHO05D004416 3.9e-89 333.2 345 54.5
BcaC08g42928 Brassica carinata HOM05D003810 ORTHO05D004416 1.6e-87 327.8 451 47.7
CARHR219980 Cardamine hirsuta HOM05D003810 ORTHO05D004416 7.6e-85 318.9 371 52.3
SMO228G0023 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 3.2e-83 313.5 601 37.1
Thhalv10011448m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 1.6e-82 311.2 532 43.4
FAN02G0111 Fragaria x ananassa HOM05D003810 ORTHO05D004416 8.7e-81 305.4 443 45.8
FAN02G0356 Fragaria x ananassa HOM05D003810 ORTHO05D004416 9.0e-78 295.4 418 45.9
MD08G1246300 Malus domestica HOM05D003810 ORTHO05D004416 2.2e-68 264.2 229 63.3
QL04p000617 Quercus lobata HOM05D003810 ORTHO05D004416 3.2e-67 260.4 390 44.9
Hma1.2p1_2995F.1_g331440 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 2.3e-65 254.2 316 51.6
BolC6t35297H Brassica oleracea HOM05D003810 ORTHO05D004416 1.7e-63 248.1 306 50.0
FAN09G2262 Fragaria x ananassa HOM05D003810 ORTHO05D004416 8.2e-63 245.7 340 46.2
RcHm_v2.0_Chr2g0090241 Rosa chinensis HOM05D003810 ORTHO05D004416 1.4e-57 228.4 464 40.1
FAN05G0299 Fragaria x ananassa HOM05D003810 ORTHO05D010162 6.7e-57 226.1 258 50.8
Gohir.A07G114432 Gossypium hirsutum HOM05D003810 ORTHO05D004416 2.4e-54 217.6 209 56.0
FAN02G2818 Fragaria x ananassa HOM05D003810 ORTHO05D004416 7.0e-54 216.1 307 44.0
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 1.4e-51 208.4 327 42.8
Lj1A897G42 Lonicera japonica HOM05D003810 ORTHO05D004416 9.4e-51 205.7 189 59.3
SHI21694 Sapria himalayana HOM05D003810 ORTHO05D004416 1.4e-46 191.8 182 56.6
CiPaw.14G066700 Carya illinoinensis HOM05D003810 ORTHO05D004416 5.3e-46 189.9 193 56.5
CBR_g28523 Chara braunii HOM05D000019 ORTHO05D000002 7.0e-46 189.5 236 46.6
Lj3g0026478 Lotus japonicus HOM05D003810 ORTHO05D004416 1.0e-44 185.7 251 44.6
Lalb_Chr06g0169761 Lupinus albus HOM05D003810 ORTHO05D004416 1.7e-44 184.9 195 56.4
TAR627G1127 Trochodendron aralioides HOM05D003810 ORTHO05D004416 2.9e-44 184.1 179 55.3
Hund17709 Selenicereus undatus HOM05D003810 ORTHO05D004416 3.8e-44 183.7 327 41.0
Potri.005G061366 Populus trichocarpa HOM05D003810 ORTHO05D004416 1.5e-43 181.8 204 50.0
Hma1.2p1_2995F.1_g331430 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 5.2e-41 173.3 190 54.2
ECA233G1945 Erigeron canadensis HOM05D000449 ORTHO05D003939 1.7e-39 168.3 217 47.0
CAN.G306.2 Capsicum annuum HOM05D003810 ORTHO05D004416 2.5e-35 154.5 182 52.7
CAN.G306.3 Capsicum annuum HOM05D003810 ORTHO05D004416 3.2e-35 154.1 182 52.7
HPP92_016056 Vanilla planifolia HOM05D003810 ORTHO05D004416 1.2e-34 152.1 120 63.3
MD08G1246400 Malus domestica HOM05D003810 ORTHO05D004416 1.5e-32 145.2 165 48.5
Actinidia03659 Actinidia chinensis HOM05D003810 ORTHO05D004416 1.8e-30 138.3 139 57.6
CAN.G790.44 Capsicum annuum HOM05D000872 ORTHO05D000777 4.7e-26 123.6 180 43.3
QL12p013194 Quercus lobata HOM05D003810 ORTHO05D004416 2.3e-25 121.3 189 38.6
Oeu005536.2 Olea europaea HOM05D003810 ORTHO05D004416 3.0e-25 120.9 161 47.8
CAN.G312.5 Capsicum annuum HOM05D003810 ORTHO05D000001 1.2e-21 109.0 164 43.3
CAN.G1328.7 Capsicum annuum HOM05D003810 ORTHO05D004416 4.7e-18 97.1 72 65.3
CAN.G1057.19 Capsicum annuum HOM05D000222 ORTHO05D004416 1.0e-17 95.9 73 64.4
CAN.G289.45 Capsicum annuum HOM05D002177 ORTHO05D004416 3.1e-17 94.4 76 60.5
TPR.G30194 Trifolium pratense HOM05D003810 ORTHO05D004416 3.1e-17 94.4 147 40.1
Hund08475 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.7e-15 88.6 76 65.8
SMO031G0001 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 2.9e-15 87.8 127 40.2
Sabra05G0051600 Salix brachista HOM05D003810 ORTHO05D004416 9.2e-14 82.8 208 34.6
CAN.G11.19 Capsicum annuum HOM05D003810 ORTHO05D004416 6.0e-13 80.1 56 66.1
MCO14G434 Micromonas commoda HOM05D003810 ORTHO05D004416 6.0e-13 80.1 494 23.7
ClCG09G022970 Citrullus lanatus HOM05D003810 ORTHO05D004416 1.7e-12 78.6 60 65.0
SHI21692 Sapria himalayana HOM05D003810 ORTHO05D004416 5.0e-12 77.0 111 38.7
CAN.G479.68 Capsicum annuum HOM05D000222 ORTHO05D004387 6.6e-12 76.6 53 67.9
PRCOL_00004489 Prasinoderma coloniale HOM05D003810 ORTHO05D004416 8.6e-12 76.3 413 25.9
SGA_v2.0_scaffold126G33829 Striga asiatica HOM05D003810 ORTHO05D004416 2.1e-10 71.6 157 33.8
CAN.G1077.9 Capsicum annuum HOM05D000222 ORTHO05D012343 3.6e-10 70.9 145 37.2
AUR62042108 Chenopodium quinoa HOM05D000216 ORTHO05D000634 1.8e-09 68.6 42 85.7
TPR.G30768 Trifolium pratense HOM05D003810 ORTHO05D004416 4.0e-09 67.4 63 54.0
CDE07G1690 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 6.8e-09 66.6 126 41.3
Nitab4.5_0001303g0160 Nicotiana tabacum HOM05D003810 ORTHO05D004416 6.8e-09 66.6 45 68.9
Hund17711 Selenicereus undatus HOM05D003810 ORTHO05D004416 6.8e-09 66.6 44 70.5
TAR629G2180 Trochodendron aralioides HOM05D003810 ORTHO05D004416 2.6e-08 64.7 49 67.3
Cre10.g466550 Chlamydomonas reinhardtii HOM05D003810 ORTHO05D004416 3.4e-08 64.3 277 23.8
CAN.G1034.2 Capsicum annuum HOM05D000222 ORTHO05D011077 4.4e-08 63.9 208 30.8
CAN.G523.5 Capsicum annuum HOM05D000222 ORTHO05D012343 2.2e-07 61.6 63 50.8
Mapoly0063s0044 Marchantia polymorpha HOM05D003810 ORTHO05D004416 4.1e-06 57.4 59 54.2


User provided reference genes

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